AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG001053

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001053 MtrunA17_Chr1g0158321 91.034 145 13 0 1 145 193 337 4.25e-96 281
MsaG001053 MtrunA17_Chr6g0467681 86.897 145 18 1 1 145 423 566 2.35e-92 278
MsaG001053 MtrunA17_Chr6g0467661 86.897 145 18 1 1 145 423 566 4.38e-92 278
MsaG001053 MtrunA17_Chr1g0158471 88.966 145 15 1 1 145 437 580 8.83e-91 275
MsaG001053 MtrunA17_Chr6g0467641 86.897 145 18 1 1 145 352 495 3.74e-90 271
MsaG001053 MtrunA17_Chr6g0467701 86.207 145 19 1 1 145 193 336 7.29e-90 265
MsaG001053 MtrunA17_Chr1g0158511 91.724 145 12 0 1 145 437 581 1.18e-88 270
MsaG001053 MtrunA17_Chr1g0158391 76.923 156 35 1 1 155 416 571 1.64e-87 266
MsaG001053 MtrunA17_Chr1g0157901 75.484 155 38 0 1 155 131 285 3.89e-86 253
MsaG001053 MtrunA17_Chr1g0157871 75.000 156 38 1 1 155 420 575 2.71e-84 258
MsaG001053 MtrunA17_Chr1g0158711 78.710 155 33 0 1 155 420 574 4.76e-82 252
MsaG001053 MtrunA17_Chr1g0157941 72.903 155 42 0 1 155 418 572 4.22e-81 249
MsaG001053 MtrunA17_Chr3g0088341 75.000 156 38 1 1 155 439 594 5.84e-73 229
MsaG001053 MtrunA17_Chr4g0037001 62.821 156 54 3 1 155 467 619 2.97e-62 201
MsaG001053 MtrunA17_Chr1g0158311 61.039 154 59 1 1 154 447 599 5.87e-62 200
MsaG001053 MtrunA17_Chr1g0158531 60.000 155 61 1 1 155 449 602 5.53e-61 197
MsaG001053 MtrunA17_Chr1g0157801 60.390 154 57 3 1 153 457 607 4.31e-58 190
MsaG001053 MtrunA17_Chr1g0158181 59.091 154 59 4 1 153 485 635 8.50e-58 190
MsaG001053 MtrunA17_Chr1g0157781 61.039 154 56 3 1 153 462 612 8.33e-57 187
MsaG001053 MtrunA17_Chr1g0158611 59.091 154 59 3 1 153 210 360 4.08e-55 177
MsaG001053 MtrunA17_Chr1g0158651 60.390 154 57 3 1 153 466 616 2.18e-54 180
MsaG001053 MtrunA17_Chr1g0158101 56.774 155 63 4 1 153 440 592 2.56e-53 177
MsaG001053 MtrunA17_Chr1g0158051 57.419 155 61 5 1 153 463 614 3.23e-53 177
MsaG001053 MtrunA17_Chr1g0157971 58.442 154 52 4 1 153 461 603 1.17e-51 173
MsaG001053 MtrunA17_Chr1g0158771 52.027 148 69 2 1 147 448 594 1.15e-49 167
MsaG001053 MtrunA17_Chr1g0160581 51.553 161 68 5 1 155 464 620 2.93e-49 167
MsaG001053 MtrunA17_Chr1g0160681 50.000 160 72 5 1 155 224 380 8.07e-49 161
MsaG001053 MtrunA17_Chr1g0160731 50.000 160 72 4 1 155 456 612 2.50e-47 161
MsaG001053 MtrunA17_Chr1g0160771 49.375 160 73 4 1 155 460 616 3.97e-47 161
MsaG001053 MtrunA17_Chr7g0251051 53.846 130 53 5 5 129 478 605 3.20e-38 137
MsaG001053 MtrunA17_Chr7g0251081 53.175 126 54 3 5 127 274 397 2.01e-37 132
MsaG001053 MtrunA17_Chr7g0253471 47.581 124 63 2 5 127 47 169 1.18e-36 124
MsaG001053 MtrunA17_Chr7g0251001 47.445 137 66 3 1 132 220 355 3.57e-36 128
MsaG001053 MtrunA17_Chr1g0160631 42.188 128 72 2 1 127 41 167 3.82e-36 124
MsaG001053 MtrunA17_Chr4g0022301 48.507 134 62 4 1 129 1 132 6.87e-36 121
MsaG001053 MtrunA17_Chr7g0251071 50.382 131 57 4 5 129 518 646 9.12e-36 130
MsaG001053 MtrunA17_Chr7g0251101 50.394 127 58 3 3 126 522 646 9.26e-36 130
MsaG001053 MtrunA17_Chr6g0484031 46.667 135 67 3 1 132 364 496 1.92e-35 128
MsaG001053 MtrunA17_Chr1g0209511 46.923 130 63 2 1 126 479 606 3.32e-35 128
MsaG001053 MtrunA17_Chr1g0158351 64.583 96 22 1 1 96 131 214 6.71e-35 121
MsaG001053 MtrunA17_Chr4g0022331 48.507 134 62 4 1 129 693 824 8.19e-35 127
MsaG001053 MtrunA17_Chr1g0160721 42.188 128 72 2 1 127 510 636 2.26e-34 126
MsaG001053 MtrunA17_Chr1g0158151 47.244 127 65 2 1 126 544 669 2.29e-34 126
MsaG001053 MtrunA17_Chr6g0484041 45.185 135 69 3 1 132 483 615 2.56e-34 126
MsaG001053 MtrunA17_Chr7g0251031 47.692 130 62 3 1 126 87 214 2.82e-34 120
MsaG001053 MtrunA17_Chr8g0391231 46.667 135 66 3 1 129 503 637 2.91e-34 126
MsaG001053 MtrunA17_Chr1g0160701 43.750 128 70 2 1 127 504 630 3.10e-34 126
MsaG001053 MtrunA17_Chr1g0212821 51.200 125 56 3 5 126 247 369 3.64e-34 123
MsaG001053 MtrunA17_Chr1g0209471 45.865 133 69 3 4 134 228 359 4.26e-34 122
MsaG001053 MtrunA17_Chr7g0250991 49.194 124 58 3 5 126 72 192 4.88e-34 119
MsaG001053 MtrunA17_Chr1g0157951 45.669 127 67 2 1 126 339 464 9.99e-34 123
MsaG001053 MtrunA17_Chr6g0483791 47.826 138 60 4 1 132 530 661 1.81e-33 124
MsaG001053 MtrunA17_Chr6g0483851 43.885 139 71 4 1 134 571 707 2.41e-33 123
MsaG001053 MtrunA17_Chr1g0160561 40.625 128 74 2 1 127 505 631 3.81e-33 123
MsaG001053 MtrunA17_Chr1g0157991 45.669 127 67 2 1 126 552 677 4.20e-33 123
MsaG001053 MtrunA17_Chr1g0158541 42.466 146 80 4 1 143 554 698 4.60e-33 122
MsaG001053 MtrunA17_Chr1g0157811 46.457 127 66 2 1 126 358 483 5.65e-33 121
MsaG001053 MtrunA17_Chr6g0484051 45.185 135 68 4 1 132 509 640 6.87e-33 122
MsaG001053 MtrunA17_Chr6g0483981 46.923 130 64 3 1 127 428 555 7.66e-33 121
MsaG001053 MtrunA17_Chr7g0250741 48.462 130 60 4 5 129 699 826 9.86e-33 122
MsaG001053 MtrunA17_Chr1g0158041 45.669 127 67 2 1 126 549 674 1.11e-32 121
MsaG001053 MtrunA17_Chr6g0484021 45.926 135 68 3 1 132 467 599 1.22e-32 121
MsaG001053 MtrunA17_Chr1g0158191 45.669 127 67 2 1 126 549 674 1.30e-32 121
MsaG001053 MtrunA17_Chr1g0158761 42.969 128 71 2 1 127 493 619 1.70e-32 121
MsaG001053 MtrunA17_Chr7g0250931 46.400 125 64 2 5 127 713 836 1.82e-32 121
MsaG001053 MtrunA17_Chr7g0232441 44.118 136 71 4 3 134 487 621 1.91e-32 120
MsaG001053 MtrunA17_Chr1g0160531 42.969 128 70 3 1 127 283 408 3.25e-32 119
MsaG001053 MtrunA17_Chr7g0251061 47.244 127 62 3 3 126 511 635 3.49e-32 120
MsaG001053 MtrunA17_Chr6g0483811 47.101 138 61 4 1 132 219 350 4.51e-32 117
MsaG001053 MtrunA17_Chr1g0158091 48.031 127 64 2 1 126 230 355 8.27e-32 116
MsaG001053 MtrunA17_Chr6g0484071 42.254 142 75 4 1 137 219 358 1.27e-31 115
MsaG001053 MtrunA17_Chr1g0157791 45.669 127 67 2 1 126 545 670 1.40e-31 118
MsaG001053 MtrunA17_Chr6g0483821 43.284 134 73 2 1 132 520 652 2.52e-31 117
MsaG001053 MtrunA17_Chr1g0158481 41.860 129 69 4 1 126 84 209 3.83e-31 112
MsaG001053 MtrunA17_Chr3g0088321 42.748 131 72 3 1 129 211 340 5.26e-31 114
MsaG001053 MtrunA17_Chr7g0232421 44.030 134 72 3 4 135 228 360 5.58e-31 114
MsaG001053 MtrunA17_Chr1g0209401 46.032 126 65 3 4 127 218 342 7.51e-31 114
MsaG001053 MtrunA17_Chr1g0158441 42.636 129 68 4 1 126 187 312 1.61e-30 112
MsaG001053 MtrunA17_Chr1g0157881 42.308 130 68 4 1 126 624 750 2.20e-30 115
MsaG001053 MtrunA17_Chr1g0157931 42.308 130 68 4 1 126 431 557 3.79e-30 114
MsaG001053 MtrunA17_Chr1g0158301 43.750 128 69 3 1 126 552 678 5.42e-30 114
MsaG001053 MtrunA17_Chr1g0209501 43.077 130 63 3 4 127 473 597 5.98e-30 114
MsaG001053 MtrunA17_Chr6g0467711 40.945 127 73 2 1 126 559 684 1.21e-29 113
MsaG001053 MtrunA17_Chr1g0158411 42.969 128 69 4 1 126 563 688 1.54e-29 112
MsaG001053 MtrunA17_Chr1g0160711 43.307 127 70 2 1 126 487 612 2.28e-29 112
MsaG001053 MtrunA17_Chr1g0158751 40.769 130 72 3 1 127 254 381 2.73e-29 110
MsaG001053 MtrunA17_Chr1g0157911 43.411 129 68 4 1 126 557 683 3.00e-29 112
MsaG001053 MtrunA17_Chr1g0158341 41.085 129 72 4 1 127 187 313 4.97e-29 108
MsaG001053 MtrunA17_Chr1g0157861 39.062 128 75 2 1 126 593 719 2.59e-28 109
MsaG001053 MtrunA17_Chr1g0158631 34.591 159 98 3 1 154 542 699 2.80e-28 109
MsaG001053 MtrunA17_Chr1g0160761 41.732 127 72 2 1 126 494 619 3.62e-28 108
MsaG001053 MtrunA17_Chr1g0158571 33.750 160 96 4 1 153 371 527 8.62e-28 107
MsaG001053 MtrunA17_Chr1g0208841 42.748 131 53 2 4 134 187 295 1.71e-27 103
MsaG001053 MtrunA17_Chr1g0158661 38.346 133 71 3 1 127 528 655 3.70e-27 105
MsaG001053 MtrunA17_Chr7g0238401 43.411 129 65 5 1 126 505 628 5.75e-26 102
MsaG001053 MtrunA17_Chr4g0036991 38.095 126 75 2 1 126 474 596 2.86e-23 94.7
MsaG001053 MtrunA17_Chr1g0160551 77.273 44 10 0 1 44 29 72 1.92e-20 80.5
MsaG001053 MtrunA17_Chr6g0467281 36.424 151 82 6 1 141 648 794 4.09e-20 85.9
MsaG001053 MtrunA17_Chr1g0160621 48.571 70 35 1 1 70 41 109 9.42e-20 79.7
MsaG001053 MtrunA17_Chr2g0297951 35.385 130 75 4 2 127 293 417 1.49e-19 84.0
MsaG001053 MtrunA17_Chr7g0250891 41.237 97 53 2 34 127 1 96 2.39e-19 78.2
MsaG001053 MtrunA17_Chr2g0318171 35.616 146 83 5 2 141 640 780 3.74e-19 83.2
MsaG001053 MtrunA17_Chr2g0314611 40.000 120 61 5 2 115 644 758 5.25e-19 82.8
MsaG001053 MtrunA17_Chr3g0137741 37.143 140 76 5 2 135 651 784 5.48e-19 82.8
MsaG001053 MtrunA17_Chr1g0149381 36.424 151 76 7 2 137 660 805 7.63e-19 82.4
MsaG001053 MtrunA17_Chr2g0297961 35.338 133 73 5 1 127 232 357 1.39e-18 81.3
MsaG001053 MtrunA17_Chr2g0297911 35.338 133 73 5 1 127 233 358 1.93e-18 80.9
MsaG001053 MtrunA17_Chr1g0202331 35.556 135 70 6 1 126 692 818 3.74e-18 80.5
MsaG001053 MtrunA17_Chr2g0297921 33.077 130 76 4 2 127 303 425 4.29e-18 80.1
MsaG001053 MtrunA17_Chr6g0467301 33.099 142 83 4 1 134 653 790 4.43e-18 80.1
MsaG001053 MtrunA17_Chr2g0297901 33.588 131 78 4 1 127 134 259 1.66e-17 77.4
MsaG001053 MtrunA17_Chr4g0063691 34.677 124 76 3 6 126 701 822 4.75e-17 77.0
MsaG001053 MtrunA17_Chr2g0333091 38.983 118 64 5 2 115 651 764 1.04e-16 76.3
MsaG001053 MtrunA17_Chr6g0484101 39.216 102 57 3 34 132 1 100 1.08e-16 71.2
MsaG001053 MtrunA17_Chr4g0063701 34.646 127 78 5 1 126 685 807 1.71e-16 75.5
MsaG001053 MtrunA17_Chr2g0314821 38.462 117 64 4 6 118 828 940 1.79e-16 75.5
MsaG001053 MtrunA17_Chr2g0314841 38.462 117 64 4 6 118 825 937 2.01e-16 75.5
MsaG001053 MtrunA17_Chr2g0278831 33.058 121 73 3 2 117 454 571 2.19e-16 75.1
MsaG001053 MtrunA17_Chr2g0306811 36.885 122 65 3 5 116 272 391 4.79e-16 73.9
MsaG001053 MtrunA17_Chr2g0278891 32.540 126 73 3 2 117 456 579 5.25e-16 73.9
MsaG001053 MtrunA17_Chr2g0314881 37.391 115 64 4 6 116 393 503 6.87e-16 73.6
MsaG001053 MtrunA17_Chr0c03g0490031 29.452 146 96 3 2 143 458 600 6.90e-16 73.6
MsaG001053 MtrunA17_Chr1g0160521 60.000 45 18 0 1 45 6 50 8.11e-16 67.8
MsaG001053 MtrunA17_Chr4g0063251 35.433 127 68 5 1 116 266 389 1.20e-15 72.8
MsaG001053 MtrunA17_Chr2g0314861 37.190 121 68 4 2 118 80 196 1.43e-15 71.6
MsaG001053 MtrunA17_Chr2g0280681 38.060 134 58 6 6 126 666 787 1.71e-15 72.8
MsaG001053 MtrunA17_Chr1g0158131 65.957 47 16 0 1 47 362 408 2.20e-15 72.0
MsaG001053 MtrunA17_Chr8g0360591 40.336 119 59 5 6 118 208 320 4.66e-15 71.2
MsaG001053 MtrunA17_Chr7g0220741 31.667 120 75 3 2 117 463 579 4.85e-15 71.2
MsaG001053 MtrunA17_Chr5g0413291 37.500 120 68 5 2 117 463 579 5.04e-15 71.2
MsaG001053 MtrunA17_Chr5g0413171 33.333 132 79 3 2 126 247 376 5.30e-15 70.9
MsaG001053 MtrunA17_Chr8g0348661 33.333 123 68 4 5 115 645 765 5.63e-15 71.2
MsaG001053 MtrunA17_Chr1g0160691 37.179 78 48 1 51 127 11 88 6.14e-15 67.0
MsaG001053 MtrunA17_Chr1g0200911 30.833 120 77 2 2 117 465 582 7.20e-15 70.9
MsaG001053 MtrunA17_Chr2g0278871 32.500 120 75 2 2 117 455 572 9.68e-15 70.5
MsaG001053 MtrunA17_Chr1g0209421 36.364 99 60 3 39 135 1 98 1.10e-14 65.9
MsaG001053 MtrunA17_Chr1g0209491 34.906 106 65 4 39 142 1 104 1.18e-14 65.9
MsaG001053 MtrunA17_Chr5g0399591 34.884 129 75 4 2 126 668 791 1.34e-14 70.1
MsaG001053 MtrunA17_Chr1g0161631 32.800 125 72 4 1 115 656 778 1.92e-14 69.7
MsaG001053 MtrunA17_Chr6g0456231 31.667 120 75 3 2 117 461 577 2.24e-14 69.3
MsaG001053 MtrunA17_Chr4g0049611 31.618 136 85 3 6 137 505 636 2.53e-14 69.3
MsaG001053 MtrunA17_Chr3g0092301 36.364 132 61 6 6 126 95 214 2.68e-14 67.8
MsaG001053 MtrunA17_Chr1g0160741 57.778 45 19 0 1 45 41 85 3.03e-14 64.3
MsaG001053 MtrunA17_Chr4g0023071 31.507 146 88 6 1 140 651 790 3.18e-14 68.9
MsaG001053 MtrunA17_Chr3g0084631 33.333 135 83 4 6 137 28 158 3.23e-14 66.2
MsaG001053 MtrunA17_Chr2g0280751 32.520 123 80 2 6 127 691 811 3.35e-14 68.9
MsaG001053 MtrunA17_Chr8g0385051 33.613 119 74 2 2 117 434 550 3.78e-14 68.6
MsaG001053 MtrunA17_Chr5g0399561 34.127 126 74 4 5 126 674 794 4.03e-14 68.6
MsaG001053 MtrunA17_Chr3g0081031 37.008 127 68 5 6 126 517 637 5.15e-14 68.6
MsaG001053 MtrunA17_Chr4g0049601 33.742 163 83 7 2 147 517 671 5.33e-14 68.2
MsaG001053 MtrunA17_Chr3g0084431 35.484 124 73 4 6 126 659 778 7.06e-14 68.2
MsaG001053 MtrunA17_Chr7g0236651 34.400 125 74 3 6 126 650 770 7.11e-14 68.2
MsaG001053 MtrunA17_Chr8g0380681 30.882 136 80 5 6 134 1154 1282 1.23e-13 67.4
MsaG001053 MtrunA17_Chr8g0380681 27.333 150 96 5 6 146 484 629 5.59e-11 59.7
MsaG001053 MtrunA17_Chr6g0484231 35.000 140 79 4 6 137 213 348 1.91e-13 66.6
MsaG001053 MtrunA17_Chr2g0297941 28.467 137 90 4 5 137 254 386 2.01e-13 66.6
MsaG001053 MtrunA17_Chr5g0433941 31.469 143 88 5 2 136 527 667 3.32e-13 65.9
MsaG001053 MtrunA17_Chr2g0278861 32.231 121 74 3 2 117 450 567 3.41e-13 65.9
MsaG001053 MtrunA17_Chr3g0078531 38.261 115 65 3 6 117 692 803 3.54e-13 65.9
MsaG001053 MtrunA17_Chr4g0042341 36.842 114 66 3 6 116 688 798 4.50e-13 65.9
MsaG001053 MtrunA17_Chr3g0078521 37.121 132 60 5 6 126 684 803 5.05e-13 65.5
MsaG001053 MtrunA17_Chr8g0338471 34.109 129 78 5 2 126 681 806 5.24e-13 65.5
MsaG001053 MtrunA17_Chr2g0318201 33.333 114 67 3 34 141 1 111 6.13e-13 61.6
MsaG001053 MtrunA17_Chr4g0048581 33.600 125 76 3 6 127 696 816 6.13e-13 65.5
MsaG001053 MtrunA17_Chr3g0078551 38.525 122 53 4 6 116 689 799 6.19e-13 65.5
MsaG001053 MtrunA17_Chr8g0359691 33.913 115 68 3 6 116 828 938 6.25e-13 65.5
MsaG001053 MtrunA17_Chr4g0042391 33.824 136 84 3 6 138 618 750 6.74e-13 65.1
MsaG001053 MtrunA17_Chr7g0226891 32.450 151 87 6 2 145 209 351 7.41e-13 64.7
MsaG001053 MtrunA17_Chr2g0323231 33.835 133 74 5 6 131 343 468 7.68e-13 65.1
MsaG001053 MtrunA17_Chr4g0073471 30.000 120 77 3 2 117 452 568 8.49e-13 64.7
MsaG001053 MtrunA17_Chr2g0278851 31.405 121 74 4 2 117 432 548 8.53e-13 64.7
MsaG001053 MtrunA17_Chr4g0042351 34.677 124 75 3 6 126 618 738 8.74e-13 64.7
MsaG001053 MtrunA17_Chr5g0428101 37.600 125 69 5 6 126 666 785 9.05e-13 64.7
MsaG001053 MtrunA17_Chr3g0093161 35.294 136 57 6 6 126 662 781 9.41e-13 64.7
MsaG001053 MtrunA17_Chr2g0312561 37.168 113 67 3 6 116 207 317 9.78e-13 64.3
MsaG001053 MtrunA17_Chr4g0049581 32.609 138 80 4 2 129 509 643 1.13e-12 64.7
MsaG001053 MtrunA17_Chr1g0206401 35.200 125 73 4 6 126 515 635 1.30e-12 64.3
MsaG001053 MtrunA17_Chr1g0154321 36.364 121 70 5 6 123 533 649 1.60e-12 63.9
MsaG001053 MtrunA17_Chr2g0280781 34.400 125 74 4 6 126 675 795 1.87e-12 63.9
MsaG001053 MtrunA17_Chr8g0358781 33.065 124 76 3 6 126 506 625 1.96e-12 63.9
MsaG001053 MtrunA17_Chr4g0042381 36.434 129 75 4 6 131 618 742 2.14e-12 63.5
MsaG001053 MtrunA17_Chr8g0360201 33.871 124 75 4 6 126 571 690 2.52e-12 63.5
MsaG001053 MtrunA17_Chr1g0175421 33.065 124 73 4 6 123 300 419 2.58e-12 63.5
MsaG001053 MtrunA17_Chr8g0358101 34.400 125 74 4 6 126 629 749 2.70e-12 63.5
MsaG001053 MtrunA17_Chr8g0338501 31.783 129 81 4 2 126 712 837 2.78e-12 63.5
MsaG001053 MtrunA17_Chr1g0206391 36.220 127 69 6 6 126 205 325 2.84e-12 63.2
MsaG001053 MtrunA17_Chr8g0367071 32.520 123 75 3 6 124 518 636 3.03e-12 63.2
MsaG001053 MtrunA17_Chr4g0072901 35.833 120 67 4 2 116 202 316 3.18e-12 63.2
MsaG001053 MtrunA17_Chr4g0071371 33.588 131 76 5 2 126 295 420 3.64e-12 62.8
MsaG001053 MtrunA17_Chr3g0125281 31.496 127 65 4 6 121 572 687 4.26e-12 62.8
MsaG001053 MtrunA17_Chr1g0205561 28.462 130 76 5 5 123 361 484 4.71e-12 62.8
MsaG001053 MtrunA17_Chr8g0361161 34.400 125 73 3 6 126 209 328 5.73e-12 62.4
MsaG001053 MtrunA17_Chr7g0274661 30.070 143 84 5 6 140 537 671 8.37e-12 62.0
MsaG001053 MtrunA17_Chr2g0280731 31.707 123 81 2 6 127 715 835 9.81e-12 62.0
MsaG001053 MtrunA17_Chr2g0312571 34.513 113 70 2 6 116 212 322 1.06e-11 61.6
MsaG001053 MtrunA17_Chr4g0048631 33.858 127 72 5 6 126 697 817 1.12e-11 61.6
MsaG001053 MtrunA17_Chr2g0280711 34.646 127 71 5 6 126 695 815 1.15e-11 61.6
MsaG001053 MtrunA17_Chr5g0422921 36.134 119 60 4 6 116 663 773 1.59e-11 61.2
MsaG001053 MtrunA17_Chr7g0236571 33.600 125 71 4 6 126 504 620 1.76e-11 61.2
MsaG001053 MtrunA17_Chr3g0098781 33.871 124 75 4 6 126 76 195 1.77e-11 60.1
MsaG001053 MtrunA17_Chr5g0428111 33.613 119 65 3 6 117 668 779 1.79e-11 61.2
MsaG001053 MtrunA17_Chr8g0357691 33.600 125 75 4 6 126 643 763 1.85e-11 60.8
MsaG001053 MtrunA17_Chr3g0081071 31.343 134 85 4 6 135 94 224 1.95e-11 60.1
MsaG001053 MtrunA17_Chr8g0359651 33.913 115 68 4 6 116 831 941 1.96e-11 60.8
MsaG001053 MtrunA17_Chr3g0084451 30.667 150 95 4 6 152 671 814 1.99e-11 60.8
MsaG001053 MtrunA17_Chr1g0175411 29.268 123 79 3 6 123 502 621 2.00e-11 60.8
MsaG001053 MtrunA17_Chr2g0314901 35.965 114 65 3 6 115 833 942 2.09e-11 60.8
MsaG001053 MtrunA17_Chr1g0154371 30.894 123 80 3 6 126 521 640 2.30e-11 60.8
MsaG001053 MtrunA17_Chr7g0242201 35.652 115 59 6 6 113 208 314 2.33e-11 60.5
MsaG001053 MtrunA17_Chr8g0361141 33.600 125 74 3 6 126 681 800 2.36e-11 60.8
MsaG001053 MtrunA17_Chr4g0071481 33.333 114 67 4 6 114 295 404 2.74e-11 60.5
MsaG001053 MtrunA17_Chr7g0236471 33.600 125 75 3 6 126 505 625 2.88e-11 60.5
MsaG001053 MtrunA17_Chr1g0150011 33.913 115 66 3 6 116 344 452 3.00e-11 60.5
MsaG001053 MtrunA17_Chr7g0264461 30.579 121 71 4 2 115 263 377 3.07e-11 60.1
MsaG001053 MtrunA17_Chr5g0428581 28.906 128 76 4 6 126 209 328 3.77e-11 60.1
MsaG001053 MtrunA17_Chr3g0084421 34.677 124 74 4 6 126 627 746 3.98e-11 60.1
MsaG001053 MtrunA17_Chr8g0366991 32.773 119 73 4 2 116 629 744 4.02e-11 60.1
MsaG001053 MtrunA17_Chr3g0078761 29.577 142 83 5 2 136 506 637 4.28e-11 60.1
MsaG001053 MtrunA17_Chr2g0314991 35.652 115 66 3 6 116 1341 1451 4.32e-11 60.1
MsaG001053 MtrunA17_Chr2g0284101 33.058 121 68 5 2 115 459 573 4.44e-11 60.1
MsaG001053 MtrunA17_Chr4g0042441 34.677 124 76 3 6 126 665 786 5.49e-11 59.7
MsaG001053 MtrunA17_Chr5g0446651 28.873 142 84 5 2 136 519 650 7.35e-11 59.3
MsaG001053 MtrunA17_Chr4g0072891 32.203 118 68 4 5 118 430 539 8.17e-11 58.9
MsaG001053 MtrunA17_Chr4g0048781 33.051 118 65 4 6 116 153 263 8.71e-11 58.5
MsaG001053 MtrunA17_Chr7g0236561 32.000 125 76 4 6 126 670 789 8.97e-11 58.9
MsaG001053 MtrunA17_Chr8g0366971 31.111 135 84 5 2 132 234 363 9.70e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001053 AT1G70250.1 48.485 132 63 2 1 127 617 748 2.94e-37 135
MsaG001053 AT5G38240.3 47.482 139 65 4 5 137 426 562 7.47e-36 130
MsaG001053 AT5G38240.2 47.482 139 65 4 5 137 472 608 9.69e-36 130
MsaG001053 AT5G38240.1 47.482 139 65 4 5 137 490 626 1.05e-35 130
MsaG001053 AT5G38260.1 46.875 128 62 3 4 126 481 607 1.15e-33 124
MsaG001053 AT5G38280.2 46.324 136 63 4 5 132 493 626 1.98e-33 124
MsaG001053 AT5G38280.1 46.324 136 63 4 5 132 493 626 2.28e-33 124
MsaG001053 AT5G38250.1 39.610 154 87 3 5 154 469 620 2.43e-33 124
MsaG001053 AT1G66910.2 48.031 127 60 3 5 126 506 631 7.90e-33 122
MsaG001053 AT1G66910.1 48.031 127 60 3 5 126 509 634 8.94e-33 122
MsaG001053 AT1G66920.3 46.774 124 64 2 5 126 443 566 1.15e-32 121
MsaG001053 AT1G66920.2 46.774 124 64 2 5 126 469 592 1.60e-31 118
MsaG001053 AT1G66920.1 46.774 124 64 2 5 126 461 584 2.04e-31 118
MsaG001053 AT1G66980.3 43.939 132 67 3 1 126 989 1119 2.52e-31 118
MsaG001053 AT1G66980.2 43.939 132 67 3 1 126 991 1121 2.86e-31 118
MsaG001053 AT1G66980.4 43.939 132 67 3 1 126 945 1075 2.96e-31 118
MsaG001053 AT1G66980.1 43.939 132 67 3 1 126 962 1092 2.96e-31 118
MsaG001053 AT1G67000.1 42.647 136 63 3 5 126 718 852 6.21e-31 117
MsaG001053 AT5G39020.1 48.000 125 61 3 5 126 657 780 1.96e-30 115
MsaG001053 AT4G18250.1 40.299 134 73 3 1 127 514 647 8.74e-30 114
MsaG001053 AT5G39030.1 43.651 126 67 2 5 126 659 784 2.08e-29 112
MsaG001053 AT5G39030.2 43.651 126 67 2 5 126 653 778 2.37e-29 112
MsaG001053 AT1G66930.1 43.750 128 66 3 5 126 508 635 1.99e-28 110
MsaG001053 AT1G66930.3 43.750 128 66 3 5 126 477 604 2.01e-28 110
MsaG001053 AT1G66930.2 43.750 128 66 3 5 126 717 844 2.25e-28 110
MsaG001053 AT1G34300.1 31.690 142 83 4 1 136 642 775 8.35e-19 82.4
MsaG001053 AT5G24080.2 35.878 131 74 4 1 126 689 814 1.70e-18 81.6
MsaG001053 AT5G24080.3 35.878 131 74 4 1 126 562 687 9.75e-18 79.3
MsaG001053 AT5G24080.1 35.878 131 74 4 1 126 562 687 9.75e-18 79.3
MsaG001053 AT2G19130.1 37.313 134 69 6 1 127 652 777 1.53e-17 79.0
MsaG001053 AT4G32300.1 37.500 120 64 5 2 115 652 766 3.71e-17 77.8
MsaG001053 AT5G51770.1 34.328 134 82 3 5 133 510 642 4.28e-16 74.7
MsaG001053 AT5G03140.1 35.115 131 72 4 2 123 531 657 5.01e-16 74.7
MsaG001053 AT4G04540.4 35.484 155 79 7 6 154 488 627 2.11e-15 72.8
MsaG001053 AT4G00340.2 35.537 121 66 4 5 115 622 740 2.16e-15 72.8
MsaG001053 AT1G60800.2 33.333 120 73 3 2 117 395 511 2.25e-15 72.8
MsaG001053 AT4G04540.1 35.484 155 79 7 6 154 517 656 2.27e-15 72.8
MsaG001053 AT4G00340.1 35.537 121 66 4 5 115 643 761 2.30e-15 72.8
MsaG001053 AT1G60800.1 33.333 120 73 3 2 117 462 578 2.63e-15 72.4
MsaG001053 AT4G23320.2 36.111 144 82 5 6 144 347 485 4.98e-15 71.6
MsaG001053 AT4G23320.1 36.111 144 82 5 6 144 347 485 4.98e-15 71.6
MsaG001053 AT4G23320.3 36.111 144 82 5 6 144 368 506 5.33e-15 71.6
MsaG001053 AT1G71830.1 30.833 120 77 2 2 117 463 580 7.73e-15 71.2
MsaG001053 AT3G25560.2 31.667 120 75 3 2 117 470 586 8.70e-15 70.9
MsaG001053 AT3G25560.1 31.667 120 75 3 2 117 469 585 8.87e-15 70.9
MsaG001053 AT4G33430.1 30.833 120 77 3 2 117 450 567 9.43e-15 70.9
MsaG001053 AT3G25560.3 31.667 120 75 3 2 117 469 585 9.70e-15 70.9
MsaG001053 AT4G33430.2 30.833 120 77 3 2 117 497 614 1.09e-14 70.9
MsaG001053 AT4G23290.1 34.722 144 84 5 6 144 484 622 1.59e-14 70.1
MsaG001053 AT1G34210.1 30.833 120 77 2 2 117 466 583 1.62e-14 70.1
MsaG001053 AT1G34210.2 30.833 120 77 2 2 117 466 583 1.62e-14 70.1
MsaG001053 AT4G23290.2 34.722 144 84 5 6 144 527 665 1.70e-14 70.1
MsaG001053 AT4G25390.1 34.559 136 80 5 5 133 513 646 2.18e-14 69.7
MsaG001053 AT1G70520.1 31.852 135 78 4 2 126 484 614 3.60e-14 69.3
MsaG001053 AT5G16000.1 32.800 125 69 4 2 117 469 587 3.88e-14 68.9
MsaG001053 AT3G53380.1 31.469 143 86 5 2 136 534 672 4.03e-14 68.9
MsaG001053 AT1G53440.1 37.190 121 65 4 6 122 831 944 6.75e-14 68.6
MsaG001053 AT5G20050.1 36.567 134 69 4 1 125 269 395 9.37e-14 67.8
MsaG001053 AT4G11460.2 37.008 127 69 5 6 126 435 556 1.21e-13 67.8
MsaG001053 AT4G11460.3 37.008 127 69 5 6 126 510 631 1.24e-13 67.8
MsaG001053 AT4G11460.1 37.008 127 69 5 6 126 513 634 1.24e-13 67.8
MsaG001053 AT4G28670.1 35.484 124 74 3 6 126 498 618 1.38e-13 67.4
MsaG001053 AT2G13800.3 29.167 120 79 2 2 117 436 553 1.77e-13 67.0
MsaG001053 AT2G13800.1 29.167 120 79 2 2 117 436 553 1.77e-13 67.0
MsaG001053 AT2G13800.4 29.167 120 79 2 2 117 319 436 1.81e-13 67.0
MsaG001053 AT2G13800.2 29.167 120 79 2 2 117 319 436 1.81e-13 67.0
MsaG001053 AT2G13790.1 29.167 120 79 2 2 117 455 572 2.04e-13 67.0
MsaG001053 AT1G29730.2 32.800 125 77 3 6 126 835 956 2.47e-13 67.0
MsaG001053 AT1G29730.1 32.800 125 77 3 6 126 803 924 2.58e-13 66.6
MsaG001053 AT1G61610.1 36.000 125 71 4 6 126 689 808 3.96e-13 66.2
MsaG001053 AT1G56130.3 33.071 127 72 5 6 126 657 776 4.11e-13 66.2
MsaG001053 AT1G56130.2 33.071 127 72 5 6 126 856 975 4.33e-13 66.2
MsaG001053 AT2G23950.1 31.667 120 75 3 2 117 456 572 4.43e-13 66.2
MsaG001053 AT1G56130.1 33.071 127 72 5 6 126 708 827 4.64e-13 66.2
MsaG001053 AT1G67520.8 35.385 130 69 6 6 126 452 575 5.23e-13 65.9
MsaG001053 AT1G67520.7 35.385 130 69 6 6 126 452 575 5.23e-13 65.9
MsaG001053 AT1G67520.3 35.385 130 69 6 6 126 660 783 5.36e-13 65.9
MsaG001053 AT1G67520.6 35.385 130 69 6 6 126 667 790 5.53e-13 65.9
MsaG001053 AT1G16670.1 35.000 120 64 4 6 118 207 319 5.79e-13 65.5
MsaG001053 AT1G67520.4 35.385 130 69 6 6 126 617 740 5.98e-13 65.9
MsaG001053 AT1G67520.5 35.385 130 69 6 6 126 423 546 6.10e-13 65.5
MsaG001053 AT1G11350.1 35.772 123 75 3 6 126 676 796 8.86e-13 65.1
MsaG001053 AT4G04570.1 37.008 127 63 6 6 126 512 627 1.21e-12 64.7
MsaG001053 AT1G53430.1 35.537 121 67 4 6 122 833 946 1.76e-12 64.3
MsaG001053 AT4G21390.1 30.370 135 83 3 6 135 693 821 1.78e-12 64.3
MsaG001053 AT1G53430.2 35.537 121 67 4 6 122 792 905 2.09e-12 64.3
MsaG001053 AT4G23260.1 33.858 127 73 5 6 126 503 624 2.29e-12 63.9
MsaG001053 AT4G23260.2 33.858 127 73 5 6 126 492 613 2.30e-12 63.9
MsaG001053 AT5G35370.1 32.593 135 68 4 2 115 673 805 2.45e-12 63.9
MsaG001053 AT4G23250.2 33.858 127 73 5 6 126 518 639 2.49e-12 63.9
MsaG001053 AT5G06740.2 27.742 155 92 5 6 145 507 656 3.37e-12 63.5
MsaG001053 AT5G06740.1 27.742 155 92 5 6 145 495 644 3.52e-12 63.5
MsaG001053 AT4G23140.1 32.540 126 75 5 6 126 515 635 4.29e-12 63.2
MsaG001053 AT4G23250.1 33.858 127 73 5 6 126 523 644 1.01e-11 62.0
MsaG001053 AT4G23250.3 33.858 127 73 5 6 126 518 639 1.07e-11 62.0
MsaG001053 AT2G39660.1 32.090 134 76 7 6 130 241 368 1.25e-11 61.6
MsaG001053 AT4G23150.1 32.000 125 77 4 6 126 500 620 1.28e-11 62.0
MsaG001053 AT1G70530.1 30.233 129 79 5 2 126 482 603 1.43e-11 61.6
MsaG001053 AT3G45860.1 29.600 125 82 3 6 126 515 637 1.76e-11 61.6
MsaG001053 AT1G56140.1 30.709 127 75 5 6 126 855 974 1.77e-11 61.6
MsaG001053 AT4G23240.1 33.775 151 86 7 2 144 493 637 2.93e-11 60.8
MsaG001053 AT5G59260.1 27.673 159 90 6 6 146 518 669 2.99e-11 60.8
MsaG001053 AT2G32800.1 32.479 117 69 4 6 116 307 419 3.15e-11 60.8
MsaG001053 AT5G10530.1 33.594 128 78 2 2 124 493 618 4.50e-11 60.5
MsaG001053 AT4G21380.1 33.071 127 76 6 6 126 690 813 4.71e-11 60.5
MsaG001053 AT1G53420.1 32.174 115 70 4 6 116 788 898 5.62e-11 60.1
MsaG001053 AT1G62950.1 36.134 119 65 4 1 114 770 882 5.74e-11 60.1
MsaG001053 AT4G23240.2 33.793 145 84 6 6 144 192 330 6.21e-11 59.7
MsaG001053 AT1G11340.1 34.921 126 71 3 6 126 679 798 7.04e-11 59.7
MsaG001053 AT4G23180.1 30.400 125 79 4 6 126 512 632 7.88e-11 59.7
MsaG001053 AT4G23160.1 32.000 125 77 4 6 126 523 643 9.22e-11 59.3

Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGCAGAACGCATGAATT+TGG 0.249824 1:+14406082 MsaT001053.1:CDS
AAATCTTCCTCTTCATCAAT+AGG 0.304364 1:-14405888 None:intergenic
TTTGTATTGGTTGTTGTTGT+TGG 0.355623 1:-14406050 None:intergenic
TGTATCACAGATTTCATTGC+CGG 0.377730 1:-14405975 None:intergenic
AATTGGCAACAGTGGGACTA+TGG 0.380700 1:+14405925 MsaT001053.1:CDS
AACAATATTAGCATTTGTAT+TGG 0.384383 1:-14406063 None:intergenic
AATCTTCCTCTTCATCAATA+GGG 0.387715 1:-14405887 None:intergenic
CAGTTACGGTATGTTATTGT+TGG 0.408903 1:+14405755 MsaT001053.1:CDS
AGCAAATTGTGGATCCAGTC+TGG 0.412538 1:-14405843 None:intergenic
TGTATCCATGACTGCGGGTA+AGG 0.413358 1:+14405659 None:intergenic
TGGATCCACAATTTGCTTGA+AGG 0.451895 1:+14405849 MsaT001053.1:CDS
ATGGCACCCTTTGCATCGTC+CGG 0.457855 1:+14405956 MsaT001053.1:CDS
CGGTATGTTATTGTTGGAGA+TGG 0.459831 1:+14405761 MsaT001053.1:CDS
GACGATGCAAAGGGTGCCAT+TGG 0.468064 1:-14405953 None:intergenic
GTTGGTCCGAACGGATTAGT+AGG 0.471761 1:-14406032 None:intergenic
TCTGTGATACAAATGATTCA+AGG 0.489918 1:+14405987 MsaT001053.1:CDS
ATGTTATTGTTGGAGATGGT+TGG 0.500053 1:+14405765 MsaT001053.1:CDS
TTCATTGCCGGACGATGCAA+AGG 0.504323 1:-14405963 None:intergenic
ACAAATCCCTATTGATGAAG+AGG 0.518286 1:+14405881 MsaT001053.1:CDS
CTCCTCCTTCAAGCAAATTG+TGG 0.532741 1:-14405854 None:intergenic
GTATCCATGACTGCGGGTAA+GGG 0.534564 1:+14405660 None:intergenic
AAGTCGCATATATACAGTTA+CGG 0.549994 1:+14405741 MsaT001053.1:CDS
TGTTCCCTTACCCGCAGTCA+TGG 0.551766 1:-14405664 None:intergenic
AAAGTGCCTACTAATCCGTT+CGG 0.554527 1:+14406026 MsaT001053.1:CDS
GTTGTTGTTGTTGGTCCGAA+CGG 0.559888 1:-14406041 None:intergenic
TACAAATGATTCAAGGAGAG+GGG 0.568459 1:+14405994 MsaT001053.1:CDS
ATACAAATGATTCAAGGAGA+GGG 0.574795 1:+14405993 MsaT001053.1:CDS
AGAACGCATGAATTTGGAGC+TGG 0.587216 1:+14406088 MsaT001053.1:CDS
AGTATTGTATCCATGACTGC+GGG 0.591782 1:+14405654 None:intergenic
TTATTGTTGGAGATGGTTGG+AGG 0.596349 1:+14405768 MsaT001053.1:CDS
TACAAGTTGAGTATCCAGAC+TGG 0.599590 1:+14405829 MsaT001053.1:CDS
ATCCACAATTTGCTTGAAGG+AGG 0.604858 1:+14405852 MsaT001053.1:CDS
ACTGCGGGTAAGGGAACAGT+AGG 0.605174 1:+14405669 MsaT001053.1:CDS
TAAGGGAACAGTAGGCTACA+TGG 0.614376 1:+14405677 MsaT001053.1:CDS
TGGGACTATGGTGTATCCAA+TGG 0.628240 1:+14405937 MsaT001053.1:CDS
ACGCATGAATTTGGAGCTGG+AGG 0.631613 1:+14406091 MsaT001053.1:CDS
TCATTGCCGGACGATGCAAA+GGG 0.631699 1:-14405962 None:intergenic
GATACAAATGATTCAAGGAG+AGG 0.634731 1:+14405992 MsaT001053.1:CDS
ACAAATGATTCAAGGAGAGG+GGG 0.654010 1:+14405995 MsaT001053.1:CDS
AAGTATTGTATCCATGACTG+CGG 0.657076 1:+14405653 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 14405666 14406133 14405666 ID=MsaG001053
Chr1 mRNA 14405666 14406133 14405666 ID=MsaT001053.1;Parent=MsaG001053
Chr1 exon 14405666 14406133 14405666 ID=MsaT001053.1.exon1;Parent=MsaT001053.1
Chr1 CDS 14405666 14406133 14405666 ID=cds.MsaT001053.1;Parent=MsaT001053.1
Gene Sequence

>MsaT001053.1

ATGACTGCGGGTAAGGGAACAGTAGGCTACATGGCACCTGAAGTTTTTTCAAGAAACTTTGGGAATGTCTCTTATAAGTCGCATATATACAGTTACGGTATGTTATTGTTGGAGATGGTTGGAGGAAGAAAGAATAGAAAAATAACCGGTGGCGAAGAAAATATACAAGTTGAGTATCCAGACTGGATCCACAATTTGCTTGAAGGAGGAGATATACAAATCCCTATTGATGAAGAGGAAGATTTTAGAATTCCAAAAAAATTGGCAACAGTGGGACTATGGTGTATCCAATGGCACCCTTTGCATCGTCCGGCAATGAAATCTGTGATACAAATGATTCAAGGAGAGGGGGACAAGTTAAAAGTGCCTACTAATCCGTTCGGACCAACAACAACAACCAATACAAATGCTAATATTGTTGCAGAACGCATGAATTTGGAGCTGGAGGTGATTGAAGAATTAGAATAA
Protein sequence

>MsaT001053.1

MTAGKGTVGYMAPEVFSRNFGNVSYKSHIYSYGMLLLEMVGGRKNRKITGGEENIQVEYPDWIHNLLEGGDIQIPIDEEEDFRIPKKLATVGLWCIQWHPLHRPAMKSVIQMIQGEGDKLKVPTNPFGPTTTTNTNANIVAERMNLELEVIEELE*