AlfalfaGEDB | MsaG001135

M. sativa ssp. caerulea / MsaG001135

KEGG: K09264
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001135	AAK77938.1	96.244	213	7	1	6	218	1	212	2.23e-146	416

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001135	sp\|Q0HA25\|MADS9_VITVI	63.592	206	74	1	6	211	1	205	8.19e-95	278

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001135	tr\|Q94FT9\|Q94FT9_MEDSA	96.244	213	7	1	6	218	1	212	1.07e-146	416

TFs/TRs:

Gene ID	Type	Classification
MsaG001135	TF	MADS-MIKC

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001135	MsaG001137	0.927108	4.972471e-91	1.610542e-86
MsaG001135	MsaG001179	0.821450	7.051196e-53	1.611472e-50
MsaG001135	MsaG003276	0.812273	7.916521e-51	1.429271e-48
MsaG001135	MsaG005839	0.800876	1.963526e-48	2.707840e-46
MsaG001135	MsaG010053	0.813600	4.065398e-51	7.587115e-49
MsaG001135	MsaG011545	0.814495	2.585100e-51	4.933992e-49
MsaG001135	MsaG012380	0.806805	1.167486e-49	1.846577e-47
MsaG001135	MsaG013909	0.812800	6.079175e-51	1.112049e-48
MsaG001135	MsaG014956	0.815322	1.698104e-51	3.309450e-49
MsaG001135	MsaG016724	0.813396	4.504933e-51	8.364549e-49
MsaG001135	MsaG020314	0.809487	3.152316e-50	5.317293e-48
MsaG001135	MsaG021405	0.829843	7.369013e-55	2.123090e-52
MsaG001135	MsaG021575	0.805069	2.694718e-49	4.091948e-47
MsaG001135	MsaG023744	0.825642	7.449285e-54	1.907286e-51
MsaG001135	MsaG024015	0.809360	3.356203e-50	5.643362e-48
MsaG001135	MsaG024240	0.805938	1.774780e-49	2.750221e-47
MsaG001135	MsaG029862	0.824200	1.624855e-53	3.999048e-51
MsaG001135	MsaG036217	0.815996	1.203835e-51	2.386575e-49
MsaG001135	MsaG041368	0.800173	2.727153e-48	3.701598e-46
MsaG001135	MsaG043665	0.811588	1.114116e-50	1.977919e-48
MsaG001135	MsaG044284	0.811228	1.332839e-50	2.345409e-48
MsaG001135	MsaG044352	0.833077	1.188871e-55	3.761463e-53
MsaG001135	MsaG044354	0.835018	3.902608e-56	1.307959e-53
MsaG001135	MsaG045125	0.823654	2.179858e-53	5.286240e-51
MsaG001135	MsaG045528	0.800800	2.034904e-48	2.801539e-46
MsaG001135	MsaG046307	0.825241	9.263361e-54	2.345639e-51
MsaG001135	MsaG046338	0.802556	8.910886e-49	1.276761e-46
MsaG001135	MsaG046339	0.803934	4.635592e-49	6.856273e-47
MsaG001135	MsaG019920	0.801525	1.448350e-48	2.026925e-46
MsaG001135	MsaG045256	0.807730	7.449119e-50	1.204432e-47
MsaG001135	MsaG043831	0.805708	1.982594e-49	3.055700e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001135	MtrunA17_Chr1g0159661	91.667	168	14	0	6	173	1	168	3.14e-109	311
MsaG001135	MtrunA17_Chr3g0125241	74.713	174	42	1	6	179	26	197	1.15e-91	267
MsaG001135	MtrunA17_Chr3g0142191	46.479	142	76	0	6	147	1	142	3.13e-41	140
MsaG001135	MtrunA17_Chr5g0404951	43.836	146	78	2	6	147	1	146	3.25e-35	124
MsaG001135	MtrunA17_Chr1g0164791	38.728	173	94	3	6	166	1	173	3.48e-35	124
MsaG001135	MtrunA17_Chr8g0351051	42.690	171	87	4	6	167	1	169	1.06e-34	124
MsaG001135	MtrunA17_Chr6g0474371	40.462	173	88	4	6	166	1	170	1.29e-33	119
MsaG001135	MtrunA17_Chr4g0061691	40.462	173	79	5	6	162	1	165	2.20e-31	114
MsaG001135	MtrunA17_Chr3g0097101	37.097	186	100	4	4	174	14	197	2.68e-31	114
MsaG001135	MtrunA17_Chr3g0077501	41.497	147	79	2	6	147	1	145	4.20e-31	113
MsaG001135	MtrunA17_Chr7g0220111	38.798	183	93	5	6	184	1	168	4.33e-31	114
MsaG001135	MtrunA17_Chr7g0220121	39.521	167	93	3	6	165	1	166	6.47e-31	114
MsaG001135	MtrunA17_Chr6g0455511	36.681	229	117	8	6	218	1	217	6.63e-31	114
MsaG001135	MtrunA17_Chr8g0366231	38.182	165	94	4	6	162	1	165	1.45e-30	112
MsaG001135	MtrunA17_Chr5g0420081	37.912	182	103	5	6	178	1	181	1.52e-30	112
MsaG001135	MtrunA17_Chr3g0122251	39.535	172	91	4	6	165	1	171	3.11e-30	112
MsaG001135	MtrunA17_Chr4g0061671	42.361	144	79	2	6	146	1	143	3.21e-30	110
MsaG001135	MtrunA17_Chr7g0246431	37.647	170	95	3	6	166	1	168	5.14e-30	110
MsaG001135	MtrunA17_Chr2g0284911	40.940	149	81	3	4	147	14	160	5.83e-30	111
MsaG001135	MtrunA17_Chr8g0380021	41.497	147	79	3	6	147	17	161	3.44e-29	109
MsaG001135	MtrunA17_Chr8g0351031	36.905	168	92	4	6	162	1	165	7.70e-29	107
MsaG001135	MtrunA17_Chr1g0204111	39.394	165	90	4	2	160	13	173	2.98e-28	107
MsaG001135	MtrunA17_Chr8g0351041	37.748	151	84	3	6	149	1	148	7.84e-28	103
MsaG001135	MtrunA17_Chr5g0411691	33.047	233	122	8	6	218	1	219	1.12e-27	105
MsaG001135	MtrunA17_Chr5g0420091	35.359	181	100	4	6	170	1	180	1.56e-27	104
MsaG001135	MtrunA17_Chr2g0279821	36.628	172	79	4	6	166	1	153	2.58e-27	104
MsaG001135	MtrunA17_Chr5g0427401	38.922	167	93	4	6	165	1	165	3.17e-27	103
MsaG001135	MtrunA17_Chr4g0057151	38.824	170	91	5	6	165	1	167	6.53e-27	102
MsaG001135	MtrunA17_Chr4g0049541	36.184	152	81	3	6	148	1	145	3.32e-26	100
MsaG001135	MtrunA17_Chr5g0412461	37.278	169	92	4	6	163	1	166	1.17e-25	99.8
MsaG001135	MtrunA17_Chr4g0049901	32.569	218	122	6	6	205	27	237	4.30e-25	98.6
MsaG001135	MtrunA17_Chr5g0412271	37.427	171	89	5	6	163	1	166	3.05e-24	95.9
MsaG001135	MtrunA17_Chr4g0020221	42.953	149	76	3	6	147	1	147	7.87e-24	95.5
MsaG001135	MtrunA17_Chr1g0173161	58.571	70	28	1	6	75	1	69	2.91e-23	89.4
MsaG001135	MtrunA17_Chr4g0018421	31.579	171	106	3	6	166	1	170	9.72e-23	91.3
MsaG001135	MtrunA17_Chr2g0308251	58.462	65	27	0	6	70	1	65	1.44e-22	87.4
MsaG001135	MtrunA17_Chr8g0377561	61.404	57	22	0	6	62	1	57	3.56e-21	84.3
MsaG001135	MtrunA17_Chr7g0246381	58.065	62	26	0	6	67	1	62	1.98e-20	81.6
MsaG001135	MtrunA17_Chr4g0044071	56.140	57	25	0	6	62	1	57	9.51e-19	78.6
MsaG001135	MtrunA17_Chr5g0425191	54.386	57	26	0	6	62	1	57	1.07e-18	78.2
MsaG001135	MtrunA17_Chr8g0379021	44.776	67	37	0	1	67	6	72	1.19e-18	80.1
MsaG001135	MtrunA17_Chr5g0427921	55.932	59	26	0	6	64	1	59	1.48e-18	76.3
MsaG001135	MtrunA17_Chr3g0134451	41.346	104	55	3	6	106	1	101	9.00e-18	80.1
MsaG001135	MtrunA17_Chr5g0419601	38.095	126	53	3	4	104	6	131	1.17e-17	78.6
MsaG001135	MtrunA17_Chr2g0333981	44.776	67	37	0	4	70	9	75	1.90e-17	76.6
MsaG001135	MtrunA17_Chr1g0188671	40.860	93	52	2	4	93	44	136	1.22e-16	76.6
MsaG001135	MtrunA17_Chr1g0169761	29.730	148	99	2	6	152	1	144	1.43e-16	74.3
MsaG001135	MtrunA17_Chr4g0060841	38.462	104	64	0	6	109	1	104	1.62e-16	77.0
MsaG001135	MtrunA17_Chr1g0208561	50.000	66	32	1	7	71	9	74	2.49e-16	74.7
MsaG001135	MtrunA17_Chr4g0052081	55.000	60	27	0	6	65	1	60	2.67e-16	73.6
MsaG001135	MtrunA17_Chr3g0089141	47.143	70	35	1	7	76	9	76	2.81e-16	74.7
MsaG001135	MtrunA17_Chr8g0376821	41.538	65	38	0	6	70	1	65	4.53e-16	73.2
MsaG001135	MtrunA17_Chr1g0175611	41.538	65	38	0	6	70	1	65	7.72e-16	72.4
MsaG001135	MtrunA17_Chr3g0099421	28.302	212	126	8	7	211	34	226	1.32e-15	73.6
MsaG001135	MtrunA17_Chr8g0357771	45.161	62	34	0	6	67	1	62	1.33e-15	72.0
MsaG001135	MtrunA17_Chr1g0208581	50.000	66	32	1	7	71	9	74	1.46e-15	72.8
MsaG001135	MtrunA17_Chr2g0317451	51.515	66	31	1	7	71	9	74	1.52e-15	72.8
MsaG001135	MtrunA17_Chr5g0417661	54.717	53	24	0	6	58	56	108	1.62e-15	70.5
MsaG001135	MtrunA17_Chr2g0317481	51.515	66	31	1	7	71	9	74	1.66e-15	72.8
MsaG001135	MtrunA17_Chr1g0175601	41.538	65	38	0	6	70	1	65	2.21e-15	71.2
MsaG001135	MtrunA17_Chr4g0052061	47.541	61	32	0	6	66	1	61	2.36e-15	70.9
MsaG001135	MtrunA17_Chr1g0149391	51.515	66	31	1	7	71	9	74	2.47e-15	72.4
MsaG001135	MtrunA17_Chr1g0187361	47.826	69	35	1	4	71	6	74	2.71e-15	72.4
MsaG001135	MtrunA17_Chr1g0180591	38.462	65	40	0	6	70	1	65	3.82e-15	70.5
MsaG001135	MtrunA17_Chr2g0292791	47.826	69	35	1	4	71	6	74	4.28e-15	71.6
MsaG001135	MtrunA17_Chr1g0206701	48.485	66	33	1	7	71	9	74	5.03e-15	71.6
MsaG001135	MtrunA17_Chr3g0099411	48.485	66	33	1	7	71	9	74	7.73e-15	70.5
MsaG001135	MtrunA17_Chr5g0422421	51.515	66	31	1	7	71	9	74	8.87e-15	70.9
MsaG001135	MtrunA17_Chr1g0206721	48.485	66	33	1	7	71	9	74	8.96e-15	70.9
MsaG001135	MtrunA17_Chr8g0355091	48.485	66	33	1	7	71	9	74	9.33e-15	70.9
MsaG001135	MtrunA17_Chr4g0074101	38.462	65	40	0	6	70	1	65	1.04e-14	69.7
MsaG001135	MtrunA17_Chr5g0422941	50.000	66	32	1	7	71	9	74	1.47e-14	70.1
MsaG001135	MtrunA17_Chr1g0206991	46.970	66	34	1	7	71	9	74	1.69e-14	68.9
MsaG001135	MtrunA17_Chr2g0300421	49.153	59	30	0	7	65	9	67	2.11e-14	68.6
MsaG001135	MtrunA17_Chr8g0356071	43.077	65	37	0	6	70	1	65	3.42e-14	67.8
MsaG001135	MtrunA17_Chr2g0325971	46.970	66	34	1	7	71	9	74	4.64e-14	68.6
MsaG001135	MtrunA17_Chr6g0457851	31.250	112	62	2	6	102	11	122	6.24e-14	69.7
MsaG001135	MtrunA17_Chr4g0018951	50.000	52	26	0	19	70	24	75	4.06e-13	65.1
MsaG001135	MtrunA17_Chr3g0111841	51.852	54	26	0	13	66	2	55	4.89e-13	62.4
MsaG001135	MtrunA17_Chr1g0166611	51.064	47	23	0	18	64	17	63	4.91e-13	63.9
MsaG001135	MtrunA17_Chr3g0085241	32.520	123	64	3	2	107	36	156	5.07e-13	66.2
MsaG001135	MtrunA17_Chr3g0119901	37.333	75	45	1	2	76	4	76	8.03e-13	65.1
MsaG001135	MtrunA17_Chr2g0300441	47.059	68	33	2	7	71	7	74	1.35e-12	64.7
MsaG001135	MtrunA17_Chr3g0089151	43.939	66	36	1	7	71	9	74	1.43e-12	62.8
MsaG001135	MtrunA17_Chr6g0449851	36.905	84	47	1	6	83	1	84	1.10e-11	63.2
MsaG001135	MtrunA17_Chr1g0212151	27.891	147	88	3	6	137	1	144	1.14e-11	63.2
MsaG001135	MtrunA17_Chr4g0071601	46.875	64	34	0	4	67	9	72	4.33e-11	59.7
MsaG001135	MtrunA17_Chr1g0187351	38.889	72	40	2	16	86	1	69	7.08e-11	56.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001135	AT5G20240.1	50.971	206	90	1	6	211	1	195	8.72e-69	210
MsaG001135	AT5G20240.2	59.441	143	58	0	6	148	1	143	1.72e-58	181
MsaG001135	AT3G54340.1	44.286	140	78	0	6	145	1	140	2.27e-37	130
MsaG001135	AT5G23260.4	40.120	167	94	2	2	162	13	179	4.43e-37	130
MsaG001135	AT5G23260.1	39.877	163	95	2	2	162	13	174	1.02e-36	129
MsaG001135	AT5G23260.2	39.877	163	92	2	6	162	1	163	5.93e-36	127
MsaG001135	AT5G23260.3	39.623	159	84	2	6	162	1	149	5.51e-34	122
MsaG001135	AT3G58780.5	40.667	150	82	2	3	147	19	166	6.62e-33	119
MsaG001135	AT3G58780.1	40.667	150	82	2	3	147	13	160	6.67e-33	119
MsaG001135	AT5G13790.1	46.528	144	63	4	6	144	1	135	7.87e-33	119
MsaG001135	AT5G13790.2	46.897	145	64	4	6	144	1	138	9.46e-33	119
MsaG001135	AT2G42830.1	40.667	150	82	2	3	147	13	160	1.34e-32	118
MsaG001135	AT2G42830.2	40.667	150	82	2	3	147	13	160	1.42e-32	118
MsaG001135	AT4G24540.1	41.071	168	87	4	6	163	1	166	1.47e-32	117
MsaG001135	AT3G58780.4	40.541	148	81	2	3	145	13	158	1.94e-32	119
MsaG001135	AT4G11880.2	40.881	159	86	3	6	160	1	155	4.88e-32	115
MsaG001135	AT4G11880.3	40.881	159	86	3	6	160	1	155	4.88e-32	115
MsaG001135	AT2G45660.1	38.235	170	94	3	6	166	1	168	8.85e-32	115
MsaG001135	AT1G26310.1	40.000	180	98	3	6	175	1	180	1.11e-31	116
MsaG001135	AT4G11880.4	41.722	151	80	3	6	152	1	147	1.72e-31	115
MsaG001135	AT4G11880.1	41.722	151	80	3	6	152	1	147	1.72e-31	115
MsaG001135	AT3G61120.1	35.455	220	130	4	6	218	1	215	1.98e-31	115
MsaG001135	AT4G22950.2	39.634	164	90	3	6	165	1	159	2.82e-31	113
MsaG001135	AT5G60910.1	40.462	173	85	4	6	165	1	168	3.11e-31	115
MsaG001135	AT2G45660.2	39.597	149	83	2	6	149	1	147	3.61e-31	112
MsaG001135	AT5G51870.4	36.723	177	92	4	6	164	1	175	3.98e-31	114
MsaG001135	AT3G02310.2	46.809	141	69	3	6	141	1	140	4.43e-31	113
MsaG001135	AT3G58780.2	39.333	150	77	2	3	147	13	153	6.54e-31	114
MsaG001135	AT5G51870.3	36.723	177	92	4	6	164	11	185	6.78e-31	113
MsaG001135	AT3G02310.1	40.741	189	99	6	6	182	1	188	7.88e-31	114
MsaG001135	AT4G22950.3	39.634	164	90	3	6	165	1	159	1.63e-30	112
MsaG001135	AT4G22950.1	39.634	164	90	3	6	165	1	159	1.63e-30	112
MsaG001135	AT5G15800.1	45.775	142	71	3	6	142	1	141	2.26e-30	112
MsaG001135	AT5G51870.1	33.333	207	128	4	6	204	1	205	2.84e-30	111
MsaG001135	AT5G15800.2	45.775	142	71	3	6	142	1	141	3.11e-30	112
MsaG001135	AT3G58780.3	35.838	173	83	2	3	147	13	185	5.57e-30	112
MsaG001135	AT2G45650.1	37.853	177	100	3	6	174	1	175	8.70e-30	111
MsaG001135	AT5G51870.5	37.500	152	87	2	1	146	19	168	1.74e-29	108
MsaG001135	AT4G09960.1	40.136	147	81	2	6	147	1	145	2.09e-29	109
MsaG001135	AT4G09960.6	40.136	147	81	2	6	147	2	146	2.46e-29	109
MsaG001135	AT4G09960.5	40.136	147	81	2	6	147	11	155	3.30e-29	109
MsaG001135	AT1G24260.1	32.456	228	131	6	6	218	1	220	3.87e-29	109
MsaG001135	AT1G24260.2	33.333	225	134	6	6	218	1	221	4.04e-29	109
MsaG001135	AT1G69120.2	37.853	177	100	5	6	173	1	176	4.68e-29	108
MsaG001135	AT4G09960.3	40.136	147	81	2	6	147	27	171	4.91e-29	109
MsaG001135	AT1G69120.1	37.853	177	100	5	6	173	1	176	5.94e-29	109
MsaG001135	AT4G09960.2	40.278	144	79	2	6	144	1	142	6.18e-29	108
MsaG001135	AT5G51870.2	38.095	147	83	2	6	146	1	145	6.56e-29	107
MsaG001135	AT4G09960.4	37.714	175	86	4	6	171	96	256	2.07e-28	109
MsaG001135	AT2G14210.1	36.585	205	98	7	6	184	1	199	2.88e-28	107
MsaG001135	AT1G24260.3	43.056	144	73	3	6	141	1	143	3.89e-28	106
MsaG001135	AT2G14210.2	36.585	205	98	7	6	184	1	199	4.26e-28	106
MsaG001135	AT3G57390.3	32.836	201	119	4	6	193	1	198	1.02e-27	105
MsaG001135	AT3G57230.1	34.225	187	97	5	6	175	1	178	1.33e-27	105
MsaG001135	AT3G57230.4	34.225	187	97	5	6	175	1	178	1.33e-27	105
MsaG001135	AT3G57390.1	32.836	201	119	4	6	193	1	198	1.94e-27	105
MsaG001135	AT4G18960.1	39.597	149	83	2	4	147	15	161	1.94e-27	105
MsaG001135	AT3G30260.1	37.500	144	84	3	6	144	1	143	2.04e-27	105
MsaG001135	AT5G51860.1	32.979	188	114	3	6	183	1	186	3.99e-27	103
MsaG001135	AT3G57230.2	36.424	151	76	3	6	145	1	142	6.11e-27	100
MsaG001135	AT5G51860.2	32.086	187	115	3	6	182	1	185	1.67e-26	101
MsaG001135	AT2G03710.3	35.503	169	99	3	6	165	1	168	3.82e-26	100
MsaG001135	AT2G03710.2	35.294	170	98	3	6	165	1	168	6.52e-26	101
MsaG001135	AT2G03710.1	35.294	170	98	3	6	165	1	168	7.24e-26	101
MsaG001135	AT5G62165.17	35.570	149	89	2	6	149	1	147	4.55e-25	96.7
MsaG001135	AT5G62165.12	35.570	149	89	2	6	149	1	147	4.55e-25	96.7
MsaG001135	AT5G62165.11	35.570	149	89	2	6	149	1	147	4.55e-25	96.7
MsaG001135	AT5G62165.3	34.884	172	97	4	6	166	1	168	4.97e-25	97.8
MsaG001135	AT5G62165.1	34.884	172	97	4	6	166	1	168	4.97e-25	97.8
MsaG001135	AT5G62165.2	34.884	172	97	4	6	166	1	168	4.97e-25	97.8
MsaG001135	AT5G62165.6	36.054	147	87	2	6	147	1	145	1.30e-24	95.1
MsaG001135	AT5G62165.9	36.054	147	87	2	6	147	1	145	1.30e-24	95.1
MsaG001135	AT5G62165.7	36.054	147	87	2	6	147	1	145	1.30e-24	95.1
MsaG001135	AT5G62165.8	36.054	147	87	2	6	147	1	145	1.30e-24	95.1
MsaG001135	AT5G62165.13	36.054	147	87	2	6	147	1	145	1.30e-24	95.1
MsaG001135	AT2G22540.3	36.905	168	94	5	6	163	1	166	1.56e-24	97.4
MsaG001135	AT2G22540.1	36.905	168	94	5	6	163	1	166	1.56e-24	97.4
MsaG001135	AT4G37940.4	34.463	177	86	5	6	171	1	158	1.91e-24	96.7
MsaG001135	AT4G37940.3	34.416	154	81	3	6	148	1	145	2.50e-24	95.1
MsaG001135	AT2G22630.1	34.807	181	94	5	6	171	1	172	6.83e-24	95.5
MsaG001135	AT2G22630.2	34.807	181	94	5	6	171	1	172	6.83e-24	95.5
MsaG001135	AT4G37940.1	36.054	147	74	3	6	141	1	138	7.20e-24	95.5
MsaG001135	AT5G10140.1	31.188	202	131	3	6	207	1	194	1.15e-23	94.0
MsaG001135	AT5G62165.10	35.714	168	87	4	6	166	1	154	1.57e-23	93.6
MsaG001135	AT5G62165.4	35.714	168	87	4	6	166	1	154	1.57e-23	93.6
MsaG001135	AT5G10140.2	36.620	142	86	2	6	147	1	138	2.24e-23	92.4
MsaG001135	AT5G10140.3	36.620	142	86	2	6	147	1	138	3.63e-23	92.4
MsaG001135	AT5G10140.4	36.620	142	86	2	6	147	1	138	5.38e-23	92.0
MsaG001135	AT1G71692.1	35.227	176	97	4	6	165	1	175	6.33e-23	92.4
MsaG001135	AT5G65050.3	29.557	203	129	6	6	203	1	194	8.28e-23	91.7
MsaG001135	AT5G65060.1	31.868	182	116	3	6	183	1	178	1.32e-22	91.3
MsaG001135	AT5G62165.14	54.795	73	31	1	6	78	1	71	7.32e-22	86.7
MsaG001135	AT2G22540.2	35.119	168	92	5	6	163	1	161	2.95e-21	88.6
MsaG001135	AT5G65050.5	29.327	208	112	8	6	203	1	183	1.11e-20	85.9
MsaG001135	AT5G65060.3	32.927	164	102	3	6	165	1	160	5.28e-20	84.3
MsaG001135	AT1G31140.2	33.108	148	93	1	6	147	1	148	5.59e-20	84.7
MsaG001135	AT1G31140.1	33.562	146	93	2	6	147	1	146	2.02e-19	83.2
MsaG001135	AT5G65050.1	28.643	199	122	6	6	203	1	180	2.40e-19	82.4
MsaG001135	AT5G65060.2	31.319	182	106	4	6	183	1	167	2.43e-19	82.4
MsaG001135	AT5G65050.2	32.121	165	102	5	6	165	1	160	2.57e-19	82.0
MsaG001135	AT5G65070.1	31.361	169	100	5	6	166	1	161	1.72e-18	80.5
MsaG001135	AT1G77980.1	49.296	71	35	1	6	76	1	70	1.71e-17	80.1
MsaG001135	AT5G65070.4	43.056	72	40	1	6	77	1	71	2.21e-17	76.3
MsaG001135	AT1G77080.4	30.198	202	129	4	6	203	1	194	2.47e-17	77.4
MsaG001135	AT1G22130.1	49.296	71	35	1	6	76	1	70	3.38e-17	79.3
MsaG001135	AT1G18750.1	36.893	103	65	0	6	108	1	103	3.46e-17	79.7
MsaG001135	AT1G18750.3	36.893	103	65	0	6	108	1	103	3.55e-17	79.7
MsaG001135	AT1G18750.4	36.893	103	65	0	6	108	1	103	3.72e-17	79.3
MsaG001135	AT1G77080.5	31.429	175	112	3	6	176	1	171	5.05e-17	75.9
MsaG001135	AT1G77080.11	32.927	164	102	3	6	165	1	160	7.13e-17	75.5
MsaG001135	AT1G77080.2	31.683	202	122	4	6	203	1	190	7.22e-17	75.9
MsaG001135	AT1G01530.1	47.692	65	34	0	1	65	1	65	7.52e-17	77.0
MsaG001135	AT1G77950.3	49.296	71	35	1	6	76	1	70	1.01e-16	76.6
MsaG001135	AT1G77950.2	49.296	71	35	1	6	76	1	70	1.01e-16	76.6
MsaG001135	AT1G77950.1	49.296	71	35	1	6	76	1	70	1.01e-16	76.6
MsaG001135	AT1G77950.4	49.296	71	35	1	6	76	1	70	1.01e-16	76.6
MsaG001135	AT2G03060.3	34.615	104	68	0	6	109	1	104	1.05e-16	78.2
MsaG001135	AT2G03060.7	34.615	104	68	0	6	109	1	104	1.05e-16	78.2
MsaG001135	AT2G03060.1	34.615	104	68	0	6	109	1	104	1.05e-16	78.2
MsaG001135	AT2G03060.2	34.615	104	68	0	6	109	1	104	1.06e-16	78.2
MsaG001135	AT5G65070.2	43.056	72	40	1	6	77	1	71	1.25e-16	76.3
MsaG001135	AT5G65080.3	28.481	158	107	3	2	157	4	157	1.62e-16	75.1
MsaG001135	AT5G65070.5	43.056	72	40	1	6	77	1	71	1.86e-16	75.1
MsaG001135	AT5G65080.2	28.049	164	91	3	2	154	4	151	5.41e-16	73.9
MsaG001135	AT1G65360.1	43.836	73	38	1	1	73	1	70	7.93e-16	73.9
MsaG001135	AT5G65070.3	47.458	59	31	0	6	64	1	59	1.85e-15	72.8
MsaG001135	AT1G47760.1	37.624	101	57	2	6	106	1	95	3.92e-15	71.2
MsaG001135	AT4G37435.1	43.836	73	38	1	6	75	1	73	1.05e-14	70.1
MsaG001135	AT2G34440.1	35.514	107	58	3	6	108	1	100	1.51e-14	69.3
MsaG001135	AT1G77080.12	34.507	142	85	2	6	147	1	134	2.83e-14	67.8
MsaG001135	AT4G36590.1	42.105	76	42	1	7	82	7	80	4.55e-14	69.3
MsaG001135	AT1G69540.1	35.922	103	65	1	6	108	1	102	4.83e-14	70.5
MsaG001135	AT1G69540.2	35.922	103	65	1	6	108	1	102	5.78e-14	70.1
MsaG001135	AT1G77080.8	27.434	226	131	5	6	203	1	221	5.79e-14	68.6
MsaG001135	AT5G60440.1	37.234	94	53	2	1	93	1	89	1.06e-13	68.9
MsaG001135	AT3G66656.1	30.833	120	64	2	6	106	1	120	1.94e-13	66.2
MsaG001135	AT2G24840.1	41.667	72	40	1	5	76	61	130	2.34e-13	67.8
MsaG001135	AT3G04100.1	45.000	60	33	0	7	66	14	73	3.87e-13	66.2
MsaG001135	AT2G26320.1	38.889	72	44	0	5	76	16	87	3.69e-12	61.2
MsaG001135	AT1G72350.1	50.000	56	28	0	7	62	43	98	1.36e-11	62.4

Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTATCATCTTTGCTCCTTC+TGG	0.286754	1:-15695537	MsaT001135.1:CDS
AAGAATAATTACGTGGTAGA+AGG	0.329612	1:+15695492	None:intergenic
AGATATTGGAGGAGGAGAAT+AGG	0.333765	1:-15694113	MsaT001135.1:CDS
AATCATGAAGGATAGAGATA+TGG	0.342085	1:-15695688	None:intergenic
TGCTTATTAGGACAAGATAT+TGG	0.352510	1:-15694127	MsaT001135.1:intron
AAGCATCTGGAAATAGGCTT+TGG	0.362433	1:-15695332	MsaT001135.1:CDS
GGCTGAAGACGAAAGGAAAA+TGG	0.368219	1:+15693860	None:intergenic
TTAGAGGATGTCTTAGAAAA+TGG	0.369795	1:-15694945	MsaT001135.1:CDS
CAAGAAGTTGATGAGATTAG+AGG	0.380421	1:-15694961	MsaT001135.1:CDS
CATAAATTTCAGGCATTTGA+AGG	0.388813	1:-15695009	MsaT001135.1:intron
GACGAAAGGAAAATGGCATC+TGG	0.389148	1:+15693867	None:intergenic
GATATTGGAGGAGGAGAATA+GGG	0.395715	1:-15694112	MsaT001135.1:CDS
ATTAAGGTTGATTGATATGC+TGG	0.409544	1:-15695367	MsaT001135.1:intron
ATACGTTTCTCTTGACCATC+TGG	0.418651	1:+15694249	None:intergenic
AGCATCTGGAAATAGGCTTT+GGG	0.423971	1:-15695331	MsaT001135.1:CDS
CCTCACTATCCGTGACAAAC+AGG	0.441523	1:-15694919	MsaT001135.1:intron
ATCATGAAGGATAGAGATAT+GGG	0.447296	1:-15695687	MsaT001135.1:CDS
GAGGTAAGATTGAGATCAAG+AGG	0.465455	1:-15695662	MsaT001135.1:CDS
AGTGGAAGGTGGGAGAGAAA+TGG	0.475072	1:-15693936	MsaT001135.1:CDS
TTTCAGGCATTTGAAGGGAA+AGG	0.501691	1:-15695003	MsaT001135.1:intron
AAGGATAGAGATATGGGGAG+AGG	0.508916	1:-15695681	MsaT001135.1:CDS
AGAAGGAGCAAAGATGATAG+TGG	0.515974	1:+15695539	None:intergenic
CAACATATGGCAGTGGAAGG+TGG	0.520579	1:-15693947	MsaT001135.1:CDS
AACATATGGCAGTGGAAGGT+GGG	0.528584	1:-15693946	MsaT001135.1:CDS
ATAAATTTCAGGCATTTGAA+GGG	0.538213	1:-15695008	MsaT001135.1:intron
GGAACTTAATATTATCATCC+AGG	0.547919	1:-15694091	MsaT001135.1:intron
AGAATAATTACGTGGTAGAA+GGG	0.550111	1:+15695493	None:intergenic
CAAGAAAGAGAATGAGGACA+TGG	0.551639	1:-15695122	MsaT001135.1:CDS
TTAGGACAAGATATTGGAGG+AGG	0.557575	1:-15694121	MsaT001135.1:intron
GAAACTCAAGAAAGAGAATG+AGG	0.565377	1:-15695128	MsaT001135.1:CDS
TTATTAGGACAAGATATTGG+AGG	0.570867	1:-15694124	MsaT001135.1:intron
AGTAGTGAGTGAAGCTGCAT+AGG	0.580197	1:+15693839	None:intergenic
ACGAAAGGAAAATGGCATCT+GGG	0.581819	1:+15693868	None:intergenic
AGGACATGGAAATTAAGCTC+AGG	0.587094	1:-15695108	MsaT001135.1:intron
CTGCATAGGCTGAAGACGAA+AGG	0.590505	1:+15693853	None:intergenic
CAACAACATATGGCAGTGGA+AGG	0.597953	1:-15693950	MsaT001135.1:CDS
CCTGTTTGTCACGGATAGTG+AGG	0.614557	1:+15694919	None:intergenic
GATGAATTTGATGAGAGTAG+TGG	0.619893	1:-15693905	MsaT001135.1:CDS
GCAGCAACAACATATGGCAG+TGG	0.620712	1:-15693954	MsaT001135.1:CDS
AAATGACTACCTGTTTGTCA+CGG	0.628800	1:+15694910	None:intergenic
GCAGATGGAAGTATACCAGA+TGG	0.657480	1:-15694264	MsaT001135.1:intron
TCATGAAGGATAGAGATATG+GGG	0.680266	1:-15695686	MsaT001135.1:CDS
GCTTTGGGATGACAAACATG+AGG	0.701004	1:-15695316	MsaT001135.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	15693829	15695706	15693829	ID=MsaG001135
Chr1	mRNA	15693829	15695706	15693829	ID=MsaT001135.1;Parent=MsaG001135
Chr1	exon	15693829	15693975	15693829	ID=MsaT001135.1.exon7;Parent=MsaT001135.1
Chr1	CDS	15693829	15693975	15693829	ID=cds.MsaT001135.1;Parent=MsaT001135.1
Chr1	exon	15694092	15694139	15694092	ID=MsaT001135.1.exon6;Parent=MsaT001135.1
Chr1	CDS	15694092	15694139	15694092	ID=cds.MsaT001135.1;Parent=MsaT001135.1
Chr1	exon	15694253	15694282	15694253	ID=MsaT001135.1.exon5;Parent=MsaT001135.1
Chr1	CDS	15694253	15694282	15694253	ID=cds.MsaT001135.1;Parent=MsaT001135.1
Chr1	exon	15694920	15695019	15694920	ID=MsaT001135.1.exon4;Parent=MsaT001135.1
Chr1	CDS	15694920	15695019	15694920	ID=cds.MsaT001135.1;Parent=MsaT001135.1
Chr1	exon	15695109	15695170	15695109	ID=MsaT001135.1.exon3;Parent=MsaT001135.1
Chr1	CDS	15695109	15695170	15695109	ID=cds.MsaT001135.1;Parent=MsaT001135.1
Chr1	exon	15695317	15695383	15695317	ID=MsaT001135.1.exon2;Parent=MsaT001135.1
Chr1	CDS	15695317	15695383	15695317	ID=cds.MsaT001135.1;Parent=MsaT001135.1
Chr1	exon	15695504	15695706	15695504	ID=MsaT001135.1.exon1;Parent=MsaT001135.1
Chr1	CDS	15695504	15695706	15695504	ID=cds.MsaT001135.1;Parent=MsaT001135.1

Gene Sequence

>MsaT001135.1

ATGAAGGATAGAGATATGGGGAGAGGTAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAACAGACAAGTTACATATTCAAAGAGAAAAAGTGGGATTTTAAAGAAAGCTAACGAAATCAATGTTCTATGTGATGCTCAAGTTTCCACTATCATCTTTGCTCCTTCTGGAAAAATGCATGAATACATTAGCCCTTCTACCACGTTGATTGATATGCTGGAGAGATATCAAAAAGCATCTGGAAATAGGCTTTGGGATGACAAACATGAGAACTTAAAGAATGAAATTGAGAAACTCAAGAAAGAGAATGAGGACATGGAAATTAAGCTCAGGCATTTGAAGGGAAAGGATATCAACACACTAAACTACAAGAAGTTGATGAGATTAGAGGATGTCTTAGAAAATGGTCTCCTCACTATCCGTGACAAACAGATGGAAGTATACCAGATGGTCAAGAGAAACGACAAGATATTGGAGGAGGAGAATAGGGAACTTAATATTATCATCCAGCAGCAACAACATATGGCAGTGGAAGGTGGGAGAGAAATGGATTATAATGATGAATTTGATGAGAGTAGTGGAAGTGATTTCAATTCCCAGATGCCATTTTCCTTTCGTCTTCAGCCTATGCAGCTTCACTCACTACTTCAGCTTTAA

Protein sequence

>MsaT001135.1

MKDRDMGRGKIEIKRIENSSNRQVTYSKRKSGILKKANEINVLCDAQVSTIIFAPSGKMHEYISPSTTLIDMLERYQKASGNRLWDDKHENLKNEIEKLKKENEDMEIKLRHLKGKDINTLNYKKLMRLEDVLENGLLTIRDKQMEVYQMVKRNDKILEEENRELNIIIQQQQHMAVEGGREMDYNDEFDESSGSDFNSQMPFSFRLQPMQLHSLLQL*