AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG001137

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001137 MtrunA17_Chr1g0159661 93.452 168 11 0 1 168 1 168 1.42e-112 319
MsaG001137 MtrunA17_Chr3g0125241 75.862 174 40 1 1 174 26 197 8.94e-94 272
MsaG001137 MtrunA17_Chr3g0142191 46.479 142 76 0 1 142 1 142 6.80e-41 139
MsaG001137 MtrunA17_Chr5g0404951 45.890 146 75 2 1 142 1 146 7.76e-38 131
MsaG001137 MtrunA17_Chr1g0164791 38.506 174 93 3 1 161 1 173 1.03e-36 128
MsaG001137 MtrunA17_Chr4g0061691 43.976 166 83 5 1 157 1 165 2.18e-33 119
MsaG001137 MtrunA17_Chr7g0220121 41.317 167 90 3 1 160 1 166 3.84e-33 119
MsaG001137 MtrunA17_Chr8g0351051 40.782 179 95 5 1 174 1 173 5.24e-33 119
MsaG001137 MtrunA17_Chr3g0097101 41.497 147 79 2 1 142 16 160 8.51e-32 115
MsaG001137 MtrunA17_Chr6g0474371 38.728 173 91 4 1 161 1 170 6.20e-31 112
MsaG001137 MtrunA17_Chr5g0420081 37.363 182 104 5 1 173 1 181 8.24e-31 113
MsaG001137 MtrunA17_Chr8g0366231 39.759 166 90 5 1 157 1 165 1.56e-30 112
MsaG001137 MtrunA17_Chr3g0077501 41.497 147 79 2 1 142 1 145 2.20e-30 111
MsaG001137 MtrunA17_Chr7g0220111 40.805 174 94 4 1 166 1 173 2.23e-30 112
MsaG001137 MtrunA17_Chr6g0455511 36.681 229 117 8 1 213 1 217 2.23e-30 112
MsaG001137 MtrunA17_Chr3g0122251 40.698 172 89 5 1 160 1 171 2.80e-30 112
MsaG001137 MtrunA17_Chr8g0380021 40.816 147 80 2 1 142 17 161 2.04e-29 109
MsaG001137 MtrunA17_Chr2g0284911 41.497 147 79 3 1 142 16 160 2.20e-29 110
MsaG001137 MtrunA17_Chr4g0061671 41.667 144 80 2 1 141 1 143 1.05e-28 106
MsaG001137 MtrunA17_Chr7g0246431 37.059 170 96 3 1 161 1 168 2.11e-28 106
MsaG001137 MtrunA17_Chr8g0351031 36.905 168 92 4 1 157 1 165 7.45e-28 105
MsaG001137 MtrunA17_Chr5g0420091 36.757 185 92 5 1 165 1 180 1.37e-27 104
MsaG001137 MtrunA17_Chr2g0279821 36.628 172 79 4 1 161 1 153 5.34e-27 103
MsaG001137 MtrunA17_Chr1g0204111 39.752 161 87 4 1 155 17 173 5.87e-27 103
MsaG001137 MtrunA17_Chr8g0351041 37.748 151 84 3 1 144 1 148 7.27e-27 100
MsaG001137 MtrunA17_Chr5g0411691 31.330 233 126 7 1 213 1 219 8.15e-27 102
MsaG001137 MtrunA17_Chr4g0057151 39.053 169 92 5 1 160 1 167 1.34e-26 101
MsaG001137 MtrunA17_Chr5g0427401 38.462 182 91 6 1 172 1 171 2.37e-26 101
MsaG001137 MtrunA17_Chr5g0412271 39.645 169 88 6 1 158 1 166 2.03e-25 99.0
MsaG001137 MtrunA17_Chr5g0412461 38.462 169 90 5 1 158 1 166 3.56e-25 98.2
MsaG001137 MtrunA17_Chr4g0049901 32.569 218 122 6 1 200 27 237 4.64e-24 95.5
MsaG001137 MtrunA17_Chr4g0049541 36.184 152 81 4 1 143 1 145 5.94e-24 94.7
MsaG001137 MtrunA17_Chr1g0173161 58.571 70 28 1 1 70 1 69 3.11e-23 89.0
MsaG001137 MtrunA17_Chr4g0020221 42.953 149 76 3 1 142 1 147 5.18e-23 93.2
MsaG001137 MtrunA17_Chr2g0308251 58.462 65 27 0 1 65 1 65 1.23e-22 87.4
MsaG001137 MtrunA17_Chr4g0018421 32.386 176 98 5 1 161 1 170 1.40e-22 90.9
MsaG001137 MtrunA17_Chr7g0246381 58.065 62 26 0 1 62 1 62 7.35e-22 85.1
MsaG001137 MtrunA17_Chr8g0377561 61.404 57 22 0 1 57 1 57 3.71e-21 84.3
MsaG001137 MtrunA17_Chr4g0044071 56.140 57 25 0 1 57 1 57 7.64e-19 78.6
MsaG001137 MtrunA17_Chr5g0425191 54.386 57 26 0 1 57 1 57 8.43e-19 78.2
MsaG001137 MtrunA17_Chr5g0427921 55.932 59 26 0 1 59 1 59 1.01e-18 76.6
MsaG001137 MtrunA17_Chr8g0379021 48.438 64 33 0 2 65 12 75 5.11e-18 78.2
MsaG001137 MtrunA17_Chr3g0134451 52.113 71 33 1 1 71 1 70 1.42e-17 79.3
MsaG001137 MtrunA17_Chr2g0333981 46.154 65 35 0 1 65 11 75 3.76e-17 75.9
MsaG001137 MtrunA17_Chr5g0419601 34.839 155 71 5 1 130 8 157 4.23e-17 77.0
MsaG001137 MtrunA17_Chr1g0175611 39.241 79 46 1 1 79 1 77 1.74e-16 73.9
MsaG001137 MtrunA17_Chr4g0060841 38.462 104 64 0 1 104 1 104 2.05e-16 76.6
MsaG001137 MtrunA17_Chr4g0052061 38.261 115 63 3 1 111 1 111 2.44e-16 73.2
MsaG001137 MtrunA17_Chr1g0208561 47.143 70 35 1 2 71 9 76 2.65e-16 74.7
MsaG001137 MtrunA17_Chr3g0089141 47.143 70 35 1 2 71 9 76 2.77e-16 74.7
MsaG001137 MtrunA17_Chr4g0052081 55.000 60 27 0 1 60 1 60 3.53e-16 73.2
MsaG001137 MtrunA17_Chr3g0099421 28.302 212 126 8 2 206 34 226 3.83e-16 74.7
MsaG001137 MtrunA17_Chr8g0376821 41.538 65 38 0 1 65 1 65 4.71e-16 73.2
MsaG001137 MtrunA17_Chr1g0169761 41.538 65 38 0 1 65 1 65 1.04e-15 72.0
MsaG001137 MtrunA17_Chr5g0417661 54.717 53 24 0 1 53 56 108 1.25e-15 70.5
MsaG001137 MtrunA17_Chr8g0357771 45.161 62 34 0 1 62 1 62 1.49e-15 71.6
MsaG001137 MtrunA17_Chr1g0208581 50.000 66 32 1 2 66 9 74 1.53e-15 72.8
MsaG001137 MtrunA17_Chr1g0175601 41.538 65 38 0 1 65 1 65 2.17e-15 71.2
MsaG001137 MtrunA17_Chr2g0317481 51.515 66 31 1 2 66 9 74 2.25e-15 72.4
MsaG001137 MtrunA17_Chr2g0317451 51.515 66 31 1 2 66 9 74 2.30e-15 72.4
MsaG001137 MtrunA17_Chr1g0187361 50.000 66 32 1 2 66 9 74 2.81e-15 72.0
MsaG001137 MtrunA17_Chr1g0149391 51.515 66 31 1 2 66 9 74 2.84e-15 72.0
MsaG001137 MtrunA17_Chr1g0188671 31.515 165 89 5 2 146 47 207 3.55e-15 72.4
MsaG001137 MtrunA17_Chr1g0180591 38.462 65 40 0 1 65 1 65 3.79e-15 70.5
MsaG001137 MtrunA17_Chr2g0292791 50.000 66 32 1 2 66 9 74 5.39e-15 71.2
MsaG001137 MtrunA17_Chr1g0206701 48.485 66 33 1 2 66 9 74 5.61e-15 71.2
MsaG001137 MtrunA17_Chr3g0099411 48.485 66 33 1 2 66 9 74 8.74e-15 70.5
MsaG001137 MtrunA17_Chr1g0206721 48.485 66 33 1 2 66 9 74 9.51e-15 70.5
MsaG001137 MtrunA17_Chr8g0355091 48.485 66 33 1 2 66 9 74 9.70e-15 70.5
MsaG001137 MtrunA17_Chr5g0422421 51.515 66 31 1 2 66 9 74 1.13e-14 70.5
MsaG001137 MtrunA17_Chr4g0074101 38.462 65 40 0 1 65 1 65 1.14e-14 69.7
MsaG001137 MtrunA17_Chr5g0422941 40.625 96 41 2 2 81 9 104 1.38e-14 70.1
MsaG001137 MtrunA17_Chr1g0206991 46.970 66 34 1 2 66 9 74 1.75e-14 68.9
MsaG001137 MtrunA17_Chr2g0300421 49.153 59 30 0 2 60 9 67 2.52e-14 68.2
MsaG001137 MtrunA17_Chr8g0356071 35.345 116 58 3 1 101 1 114 2.86e-14 67.8
MsaG001137 MtrunA17_Chr2g0325971 44.286 70 37 1 2 71 9 76 4.38e-14 68.6
MsaG001137 MtrunA17_Chr2g0300441 28.837 215 123 9 2 206 7 201 1.30e-13 67.4
MsaG001137 MtrunA17_Chr1g0166611 32.710 107 61 3 13 117 17 114 1.32e-13 65.5
MsaG001137 MtrunA17_Chr3g0085241 34.167 120 58 4 1 102 40 156 1.33e-13 67.8
MsaG001137 MtrunA17_Chr3g0119901 32.500 120 60 4 1 102 8 124 3.53e-13 65.9
MsaG001137 MtrunA17_Chr4g0018951 50.000 52 26 0 14 65 24 75 4.46e-13 64.7
MsaG001137 MtrunA17_Chr3g0111841 51.852 54 26 0 8 61 2 55 5.78e-13 62.0
MsaG001137 MtrunA17_Chr6g0457851 34.524 84 49 1 1 78 11 94 8.93e-13 66.2
MsaG001137 MtrunA17_Chr3g0089151 43.939 66 36 1 2 66 9 74 1.46e-12 62.4
MsaG001137 MtrunA17_Chr6g0449851 43.548 62 35 0 1 62 1 62 1.34e-11 62.8
MsaG001137 MtrunA17_Chr1g0187351 39.437 71 39 2 11 80 1 68 5.19e-11 56.6
MsaG001137 MtrunA17_Chr1g0212151 33.333 84 50 1 1 78 1 84 7.04e-11 60.8
MsaG001137 MtrunA17_Chr1g0206691 34.513 113 57 4 11 109 1 110 7.32e-11 59.7
MsaG001137 MtrunA17_Chr4g0071601 48.387 62 32 0 1 62 11 72 8.94e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001137 AT5G20240.1 53.398 206 85 1 1 206 1 195 6.50e-73 220
MsaG001137 AT5G20240.2 60.839 143 56 0 1 143 1 143 1.12e-60 187
MsaG001137 AT3G54340.1 43.972 141 79 0 1 141 1 141 7.52e-37 129
MsaG001137 AT5G23260.2 37.989 179 104 3 1 173 1 178 9.81e-35 124
MsaG001137 AT5G23260.4 37.989 179 104 3 1 173 17 194 2.04e-34 123
MsaG001137 AT5G23260.1 37.714 175 105 3 1 173 17 189 3.59e-34 122
MsaG001137 AT5G60910.1 42.604 169 87 4 1 160 1 168 1.92e-33 120
MsaG001137 AT3G58780.1 42.177 147 78 2 1 142 16 160 2.75e-33 120
MsaG001137 AT3G58780.5 42.177 147 78 2 1 142 22 166 3.52e-33 120
MsaG001137 AT5G23260.3 37.714 175 96 3 1 173 1 164 5.30e-33 119
MsaG001137 AT2G42830.1 42.177 147 78 2 1 142 16 160 7.78e-33 119
MsaG001137 AT2G42830.2 42.177 147 78 2 1 142 16 160 7.82e-33 119
MsaG001137 AT3G58780.4 41.781 146 78 2 1 141 16 159 9.21e-33 119
MsaG001137 AT5G13790.2 46.207 145 65 4 1 139 1 138 9.86e-32 116
MsaG001137 AT5G13790.1 45.775 142 67 3 1 139 1 135 1.40e-31 116
MsaG001137 AT5G51870.4 32.589 224 119 6 1 199 1 217 2.24e-31 114
MsaG001137 AT5G51870.3 32.589 224 119 6 1 199 11 227 2.83e-31 114
MsaG001137 AT3G58780.2 40.816 147 73 2 1 142 16 153 3.08e-31 114
MsaG001137 AT3G02310.2 46.809 141 69 3 1 136 1 140 4.45e-31 113
MsaG001137 AT1G26310.1 41.317 167 88 3 1 157 1 167 1.13e-30 113
MsaG001137 AT4G24540.1 40.476 168 88 4 1 158 1 166 1.27e-30 112
MsaG001137 AT5G51870.1 35.354 198 112 6 1 185 1 195 2.14e-30 111
MsaG001137 AT1G24260.1 34.375 224 132 6 1 213 1 220 2.51e-30 112
MsaG001137 AT3G02310.1 46.099 141 70 3 1 136 1 140 2.74e-30 112
MsaG001137 AT3G58780.3 37.059 170 79 2 1 142 16 185 2.99e-30 112
MsaG001137 AT5G15800.1 45.775 142 71 3 1 137 1 141 3.11e-30 112
MsaG001137 AT2G45660.1 38.235 170 94 3 1 161 1 168 3.22e-30 111
MsaG001137 AT5G15800.2 45.775 142 71 3 1 137 1 141 3.76e-30 112
MsaG001137 AT4G11880.2 40.373 161 86 4 1 156 1 156 4.40e-30 110
MsaG001137 AT4G11880.3 40.373 161 86 4 1 156 1 156 4.40e-30 110
MsaG001137 AT1G24260.2 33.624 229 128 6 1 213 1 221 4.61e-30 112
MsaG001137 AT2G45660.2 39.597 149 83 2 1 144 1 147 1.24e-29 108
MsaG001137 AT4G11880.4 41.176 153 78 4 1 147 1 147 1.70e-29 109
MsaG001137 AT4G11880.1 41.176 153 78 4 1 147 1 147 1.70e-29 109
MsaG001137 AT4G09960.1 40.397 151 75 3 1 142 1 145 1.76e-29 109
MsaG001137 AT4G09960.6 40.397 151 75 3 1 142 2 146 1.78e-29 109
MsaG001137 AT4G09960.5 40.397 151 75 3 1 142 11 155 2.07e-29 110
MsaG001137 AT3G57390.3 34.000 200 118 3 1 188 1 198 2.67e-29 109
MsaG001137 AT1G24260.3 42.568 148 68 3 1 136 1 143 2.78e-29 109
MsaG001137 AT4G09960.4 38.286 175 85 4 1 166 96 256 2.83e-29 111
MsaG001137 AT4G09960.3 40.397 151 75 3 1 142 27 171 3.03e-29 110
MsaG001137 AT3G61120.1 34.545 220 132 4 1 213 1 215 3.22e-29 109
MsaG001137 AT2G45650.1 36.364 209 123 5 1 204 1 204 4.02e-29 109
MsaG001137 AT4G09960.2 40.541 148 73 3 1 139 1 142 4.47e-29 108
MsaG001137 AT3G57390.1 34.000 200 118 3 1 188 1 198 5.59e-29 109
MsaG001137 AT4G22950.2 39.759 166 87 4 1 160 1 159 5.69e-29 107
MsaG001137 AT1G69120.2 38.824 170 94 5 1 161 1 169 6.90e-29 108
MsaG001137 AT5G51870.2 38.514 148 81 3 1 141 1 145 1.00e-28 106
MsaG001137 AT1G69120.1 36.313 179 104 4 1 170 1 178 1.14e-28 108
MsaG001137 AT5G51870.5 38.514 148 81 3 1 141 24 168 2.20e-28 106
MsaG001137 AT4G22950.3 39.759 166 87 4 1 160 1 159 2.90e-28 106
MsaG001137 AT4G22950.1 39.759 166 87 4 1 160 1 159 2.90e-28 106
MsaG001137 AT3G30260.1 38.621 145 81 4 1 139 1 143 3.59e-28 107
MsaG001137 AT3G57230.1 34.759 187 96 5 1 170 1 178 3.67e-27 103
MsaG001137 AT3G57230.4 34.759 187 96 5 1 170 1 178 3.67e-27 103
MsaG001137 AT3G57230.2 38.095 147 79 3 1 140 1 142 6.00e-27 100
MsaG001137 AT4G18960.1 40.000 150 75 3 2 142 18 161 7.08e-27 103
MsaG001137 AT2G14210.1 37.079 178 91 5 1 164 1 171 1.40e-26 102
MsaG001137 AT2G03710.3 36.416 173 92 4 1 160 1 168 1.56e-26 100
MsaG001137 AT2G14210.2 37.079 178 91 5 1 164 1 171 1.81e-26 102
MsaG001137 AT2G03710.2 36.416 173 92 4 1 160 1 168 3.54e-26 102
MsaG001137 AT2G03710.1 36.416 173 92 4 1 160 1 168 3.84e-26 102
MsaG001137 AT5G51860.2 35.333 150 89 2 1 144 1 148 1.53e-25 99.0
MsaG001137 AT5G51860.1 35.333 150 89 2 1 144 1 148 2.09e-25 99.0
MsaG001137 AT5G62165.17 37.748 151 83 5 1 144 1 147 4.43e-25 96.3
MsaG001137 AT5G62165.12 37.748 151 83 5 1 144 1 147 4.43e-25 96.3
MsaG001137 AT5G62165.11 37.748 151 83 5 1 144 1 147 4.43e-25 96.3
MsaG001137 AT5G62165.3 37.209 172 93 6 1 161 1 168 7.14e-25 97.4
MsaG001137 AT5G62165.1 37.209 172 93 6 1 161 1 168 7.14e-25 97.4
MsaG001137 AT5G62165.2 37.209 172 93 6 1 161 1 168 7.14e-25 97.4
MsaG001137 AT5G62165.6 38.255 149 81 5 1 142 1 145 1.20e-24 95.1
MsaG001137 AT5G62165.9 38.255 149 81 5 1 142 1 145 1.20e-24 95.1
MsaG001137 AT5G62165.7 38.255 149 81 5 1 142 1 145 1.20e-24 95.1
MsaG001137 AT5G62165.8 38.255 149 81 5 1 142 1 145 1.20e-24 95.1
MsaG001137 AT5G62165.13 38.255 149 81 5 1 142 1 145 1.20e-24 95.1
MsaG001137 AT4G37940.3 34.416 154 81 3 1 143 1 145 5.36e-24 94.0
MsaG001137 AT4G37940.4 34.239 184 91 5 1 173 1 165 6.41e-24 95.1
MsaG001137 AT5G62165.10 38.095 168 83 6 1 161 1 154 1.71e-23 93.6
MsaG001137 AT5G62165.4 38.095 168 83 6 1 161 1 154 1.71e-23 93.6
MsaG001137 AT5G10140.1 32.338 201 126 4 1 200 1 192 2.09e-23 93.2
MsaG001137 AT4G37940.1 36.054 147 74 3 1 136 1 138 2.18e-23 94.0
MsaG001137 AT5G65060.1 32.967 182 114 3 1 178 1 178 4.15e-23 92.4
MsaG001137 AT2G22540.3 37.278 169 92 6 1 158 1 166 4.28e-23 93.6
MsaG001137 AT2G22540.1 37.278 169 92 6 1 158 1 166 4.28e-23 93.6
MsaG001137 AT5G10140.2 37.762 143 83 3 1 142 1 138 4.28e-23 91.7
MsaG001137 AT5G10140.3 37.762 143 83 3 1 142 1 138 5.36e-23 91.7
MsaG001137 AT5G65050.3 29.268 205 127 5 1 198 1 194 6.14e-23 92.0
MsaG001137 AT2G22630.1 34.043 188 100 5 1 173 1 179 7.40e-23 92.4
MsaG001137 AT2G22630.2 34.043 188 100 5 1 173 1 179 7.40e-23 92.4
MsaG001137 AT5G10140.4 37.762 143 83 3 1 142 1 138 9.12e-23 91.3
MsaG001137 AT1G71692.1 35.227 176 97 5 1 160 1 175 5.13e-22 89.7
MsaG001137 AT5G62165.14 54.795 73 31 1 1 73 1 71 7.12e-22 86.7
MsaG001137 AT5G65060.3 34.146 164 100 3 1 160 1 160 3.82e-21 87.0
MsaG001137 AT5G65050.5 28.571 203 120 7 1 198 1 183 1.43e-20 85.5
MsaG001137 AT5G65050.2 30.108 186 113 5 1 179 1 176 3.90e-20 84.0
MsaG001137 AT2G22540.2 35.503 169 90 6 1 158 1 161 6.12e-20 85.1
MsaG001137 AT1G31140.1 34.014 147 91 2 1 142 1 146 1.13e-19 83.6
MsaG001137 AT5G65050.1 28.358 201 120 5 1 198 1 180 1.40e-19 82.8
MsaG001137 AT5G65060.2 32.418 182 104 5 1 178 1 167 1.64e-19 82.8
MsaG001137 AT5G65070.1 32.544 169 98 5 1 161 1 161 2.17e-19 82.8
MsaG001137 AT1G31140.2 33.557 149 91 2 1 142 1 148 2.22e-19 83.2
MsaG001137 AT1G77080.4 32.353 204 122 5 1 198 1 194 2.69e-18 79.7
MsaG001137 AT1G77980.1 32.941 170 90 4 1 148 1 168 2.78e-18 82.0
MsaG001137 AT1G77080.5 34.463 177 104 4 1 171 1 171 2.83e-18 79.0
MsaG001137 AT1G77080.11 35.542 166 95 4 1 160 1 160 8.25e-18 77.8
MsaG001137 AT1G77080.2 32.673 202 120 4 1 198 1 190 9.94e-18 78.2
MsaG001137 AT5G65070.4 32.895 152 88 5 1 148 1 142 1.36e-17 76.6
MsaG001137 AT1G22130.1 49.296 71 35 1 1 71 1 70 2.86e-17 79.3
MsaG001137 AT5G65080.2 29.375 160 86 3 1 149 8 151 3.48e-17 77.0
MsaG001137 AT5G65080.3 30.769 156 98 4 1 152 8 157 4.95e-17 76.3
MsaG001137 AT1G18750.1 36.893 103 65 0 1 103 1 103 5.01e-17 79.0
MsaG001137 AT1G18750.4 36.893 103 65 0 1 103 1 103 5.61e-17 79.0
MsaG001137 AT1G18750.3 36.893 103 65 0 1 103 1 103 5.75e-17 79.0
MsaG001137 AT1G77080.8 30.088 226 125 7 1 198 1 221 6.26e-17 76.6
MsaG001137 AT1G01530.1 28.821 229 119 8 1 202 6 217 6.53e-17 77.0
MsaG001137 AT1G77950.3 39.831 118 56 3 1 105 1 116 8.52e-17 76.6
MsaG001137 AT1G77950.2 39.831 118 56 3 1 105 1 116 8.52e-17 76.6
MsaG001137 AT1G77950.1 39.831 118 56 3 1 105 1 116 8.52e-17 76.6
MsaG001137 AT1G77950.4 39.831 118 56 3 1 105 1 116 8.52e-17 76.6
MsaG001137 AT5G65070.2 43.056 72 40 1 1 72 1 71 1.42e-16 75.9
MsaG001137 AT5G65070.5 43.056 72 40 1 1 72 1 71 1.72e-16 75.1
MsaG001137 AT2G03060.2 34.951 103 67 0 1 103 1 103 2.31e-16 77.0
MsaG001137 AT2G03060.3 34.951 103 67 0 1 103 1 103 2.53e-16 77.0
MsaG001137 AT2G03060.7 34.951 103 67 0 1 103 1 103 2.53e-16 77.0
MsaG001137 AT2G03060.1 34.951 103 67 0 1 103 1 103 2.53e-16 77.0
MsaG001137 AT1G47760.1 34.028 144 81 5 1 144 1 130 5.49e-16 73.2
MsaG001137 AT5G65070.3 47.458 59 31 0 1 59 1 59 1.90e-15 72.8
MsaG001137 AT1G65360.1 45.588 68 34 1 1 68 6 70 3.44e-15 72.0
MsaG001137 AT1G77080.12 35.915 142 83 2 1 142 1 134 3.71e-15 70.1
MsaG001137 AT4G37435.1 43.836 73 38 1 1 70 1 73 1.58e-14 69.3
MsaG001137 AT2G34440.1 39.726 73 42 1 1 73 1 71 2.07e-14 68.9
MsaG001137 AT1G69540.1 35.922 103 65 1 1 103 1 102 7.42e-14 69.7
MsaG001137 AT1G69540.2 35.922 103 65 1 1 103 1 102 8.42e-14 69.7
MsaG001137 AT2G24840.1 33.058 121 63 3 1 106 62 179 1.23e-13 68.2
MsaG001137 AT4G36590.1 49.180 61 31 0 2 62 7 67 1.53e-13 67.8
MsaG001137 AT3G66656.1 37.500 72 43 1 1 72 1 70 3.30e-13 65.9
MsaG001137 AT5G60440.1 45.455 66 35 1 2 66 7 72 3.99e-13 67.4
MsaG001137 AT3G04100.1 45.000 60 33 0 2 61 14 73 4.35e-13 65.9
MsaG001137 AT2G26320.1 39.437 71 43 0 1 71 17 87 5.76e-12 60.8
MsaG001137 AT1G72350.1 50.000 56 28 0 2 57 43 98 1.60e-11 62.0

Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATCATCTTTGCTCCTTC+TGG 0.286754 1:-15704794 MsaT001137.1:CDS
AAGAATAATTACGTGGTAGA+AGG 0.329612 1:+15704749 None:intergenic
AAGCATCTGGAAAGAGGCTT+TGG 0.351747 1:-15704589 MsaT001137.1:CDS
CAAGAAGTTGATGAGCTTAG+AGG 0.355446 1:-15704215 MsaT001137.1:CDS
GGCTGAACACGAAAGGAAAA+TGG 0.369681 1:+15703424 None:intergenic
CACGAAAGGAAAATGGCATC+TGG 0.379047 1:+15703431 None:intergenic
TTAACCTTATACCTCATGTT+TGG 0.379567 1:+15704562 None:intergenic
GATCTTGGAGGAGGAGAATA+GGG 0.403567 1:-15703700 MsaT001137.1:CDS
ATTAAGGTTGATTGATATGC+TGG 0.409544 1:-15704624 MsaT001137.1:intron
TGCTTATTAGGACAAGATCT+TGG 0.409758 1:-15703715 MsaT001137.1:intron
AGATCTTGGAGGAGGAGAAT+AGG 0.410258 1:-15703701 MsaT001137.1:CDS
ATACATTTCTCTTGACCATC+TGG 0.411659 1:+15703866 None:intergenic
CATAAATTTCAGGCACTTGA+AGG 0.416312 1:-15704263 MsaT001137.1:intron
AGCATCTGGAAAGAGGCTTT+GGG 0.457669 1:-15704588 MsaT001137.1:CDS
AATTGCCTACCTGTTTGTTA+CGG 0.458958 1:+15704164 None:intergenic
GAGGTAAGATTGAGATCAAG+AGG 0.465455 1:-15704919 MsaT001137.1:CDS
CCTCACTATCCGTAACAAAC+AGG 0.469974 1:-15704173 MsaT001137.1:intron
AGTGGAAGGTGGGAGAGAAA+TGG 0.475072 1:-15703500 MsaT001137.1:CDS
AGAAGGAGCAAAGATGATAG+TGG 0.515974 1:+15704796 None:intergenic
CAACGTATGGCAGTGGAAGG+TGG 0.530390 1:-15703511 MsaT001137.1:CDS
TTATTAGGACAAGATCTTGG+AGG 0.534898 1:-15703712 MsaT001137.1:intron
AAAGATAGAGATATGGGGAG+AGG 0.535961 1:-15704938 None:intergenic
TTAGGACAAGATCTTGGAGG+AGG 0.546605 1:-15703709 MsaT001137.1:intron
AGAATAATTACGTGGTAGAA+GGG 0.550111 1:+15704750 None:intergenic
CAAGAAAGAGAATGAGGACA+TGG 0.551639 1:-15704370 MsaT001137.1:CDS
AACGTATGGCAGTGGAAGGT+GGG 0.551647 1:-15703510 MsaT001137.1:CDS
ATAAATTTCAGGCACTTGAA+GGG 0.553185 1:-15704262 MsaT001137.1:intron
GAAACTCAAGAAAGAGAATG+AGG 0.565377 1:-15704376 MsaT001137.1:CDS
AGGACATGGAAATTGAGCTC+AGG 0.575360 1:-15704356 MsaT001137.1:intron
AGTAGTGAGTGAAGCTGCAT+AGG 0.580197 1:+15703403 None:intergenic
ACGAAAGGAAAATGGCATCT+GGG 0.585200 1:+15703432 None:intergenic
GCAGCAACAACGTATGGCAG+TGG 0.588601 1:-15703518 MsaT001137.1:CDS
CTGCATAGGCTGAACACGAA+AGG 0.591967 1:+15703417 None:intergenic
CCTGTTTGTTACGGATAGTG+AGG 0.610217 1:+15704173 None:intergenic
CAACAACGTATGGCAGTGGA+AGG 0.619653 1:-15703514 MsaT001137.1:CDS
GATGAATTTGATGAGAGTAG+TGG 0.619893 1:-15703469 MsaT001137.1:CDS
GCAGATGGAAGTATACCAGA+TGG 0.657480 1:-15703881 MsaT001137.1:intron
GCTTTGGGATGCCAAACATG+AGG 0.693901 1:-15704573 MsaT001137.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 15703393 15704948 15703393 ID=MsaG001137
Chr1 mRNA 15703393 15704948 15703393 ID=MsaT001137.1;Parent=MsaG001137
Chr1 exon 15703393 15703539 15703393 ID=MsaT001137.1.exon7;Parent=MsaT001137.1
Chr1 CDS 15703393 15703539 15703393 ID=cds.MsaT001137.1;Parent=MsaT001137.1
Chr1 exon 15703680 15703727 15703680 ID=MsaT001137.1.exon6;Parent=MsaT001137.1
Chr1 CDS 15703680 15703727 15703680 ID=cds.MsaT001137.1;Parent=MsaT001137.1
Chr1 exon 15703870 15703899 15703870 ID=MsaT001137.1.exon5;Parent=MsaT001137.1
Chr1 CDS 15703870 15703899 15703870 ID=cds.MsaT001137.1;Parent=MsaT001137.1
Chr1 exon 15704174 15704273 15704174 ID=MsaT001137.1.exon4;Parent=MsaT001137.1
Chr1 CDS 15704174 15704273 15704174 ID=cds.MsaT001137.1;Parent=MsaT001137.1
Chr1 exon 15704357 15704418 15704357 ID=MsaT001137.1.exon3;Parent=MsaT001137.1
Chr1 CDS 15704357 15704418 15704357 ID=cds.MsaT001137.1;Parent=MsaT001137.1
Chr1 exon 15704574 15704640 15704574 ID=MsaT001137.1.exon2;Parent=MsaT001137.1
Chr1 CDS 15704574 15704640 15704574 ID=cds.MsaT001137.1;Parent=MsaT001137.1
Chr1 exon 15704761 15704948 15704761 ID=MsaT001137.1.exon1;Parent=MsaT001137.1
Chr1 CDS 15704761 15704948 15704761 ID=cds.MsaT001137.1;Parent=MsaT001137.1
Gene Sequence

>MsaT001137.1

ATGGGGAGAGGTAAGATTGAGATCAAGAGGATTGAAAACTCAAGCAACAGACAAGTTACATATTCAAAGAGAAAAAGTGGGATTTTAAAGAAAGCTAACGAAATCAATGTTCTATGTGATGCTCAAGTTTCCACTATCATCTTTGCTCCTTCTGGAAAAATGCATGAATACATTAGCCCTTCTACCACGTTGATTGATATGCTGGAGAGATACCAAAAAGCATCTGGAAAGAGGCTTTGGGATGCCAAACATGAGAACTTACTGAATGAAATTGAGAAACTCAAGAAAGAGAATGAGGACATGGAAATTGAGCTCAGGCACTTGAAGGGAAAAGATATCGACACACTAAACTACAAGAAGTTGATGAGCTTAGAGGATGTTTTAGAAAATGGTCTCCTCACTATCCGTAACAAACAGATGGAAGTATACCAGATGGTCAAGAGAAATGACAAGATCTTGGAGGAGGAGAATAGGGAACTTAATTTTATCCTCCAGCAGCAACAACGTATGGCAGTGGAAGGTGGGAGAGAAATGGATTATAATGATGAATTTGATGAGAGTAGTGGAAGTGATTTCAATTCCCAGATGCCATTTTCCTTTCGTGTTCAGCCTATGCAGCTTCACTCACTACTTCAGCTTTAA
Protein sequence

>MsaT001137.1

MGRGKIEIKRIENSSNRQVTYSKRKSGILKKANEINVLCDAQVSTIIFAPSGKMHEYISPSTTLIDMLERYQKASGKRLWDAKHENLLNEIEKLKKENEDMEIELRHLKGKDIDTLNYKKLMSLEDVLENGLLTIRNKQMEVYQMVKRNDKILEEENRELNFILQQQQRMAVEGGREMDYNDEFDESSGSDFNSQMPFSFRVQPMQLHSLLQL*