AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG001161


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001161 MtrunA17_Chr1g0159911 93.636 110 7 0 1 110 1 110 2.21e-65 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001161 AT1G44414.1 62.727 110 32 2 1 110 1 101 1.60e-43 137

Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCCCGTTTGGCGGTGGCC+AGG 0.363736 1:+16109052 MsaT001161.1:CDS
CAGCGGTGGTTCAACGTTGC+CGG 0.399370 1:+16109150 MsaT001161.1:CDS
TACCGACATCGCAAGGCTTC+CGG 0.400549 1:-16109169 None:intergenic
CCACCGCTGGACGGCGGAGG+AGG 0.404658 1:-16109136 None:intergenic
GTTCGCCAGGTGGTGAAATC+AGG 0.405267 1:+16108956 MsaT001161.1:CDS
TTCCCTGGCCACCGCCAAAC+GGG 0.406298 1:-16109055 None:intergenic
AAAATGTTCTTCTTCTTAGC+AGG 0.423246 1:+16108917 None:intergenic
CTTCCCTGGCCACCGCCAAA+CGG 0.426962 1:-16109056 None:intergenic
ATTTCACCACCTGGCGAACC+TGG 0.448778 1:-16108952 None:intergenic
TTCCCGTTTGGCGGTGGCCA+GGG 0.453465 1:+16109053 MsaT001161.1:CDS
TGCGATGTCGGTACTGTGAT+CGG 0.460955 1:+16109179 MsaT001161.1:CDS
CGCTGGACGGCGGAGGAGGA+AGG 0.466799 1:-16109132 None:intergenic
TACAGTTGTTCACCACAGTA+AGG 0.478529 1:-16109229 None:intergenic
TACAAGAGAGTTTCCTTCCC+TGG 0.491912 1:-16109070 None:intergenic
GTTAGAAAACCAGGTTCGCC+AGG 0.505813 1:+16108943 MsaT001161.1:CDS
TCTTCGTTCCCGTTTGGCGG+TGG 0.506122 1:+16109047 MsaT001161.1:CDS
GCTGGACGGCGGAGGAGGAA+GGG 0.512715 1:-16109131 None:intergenic
GGAGGAAGGGAATGCGATTG+AGG 0.522381 1:-16109118 None:intergenic
TGCCGGAAGCCTTGCGATGT+CGG 0.532323 1:+16109167 MsaT001161.1:CDS
CGGCAACGTTGAACCACCGC+TGG 0.535110 1:-16109149 None:intergenic
AGCAGGAGGGTTAGAAAACC+AGG 0.535530 1:+16108934 MsaT001161.1:CDS
CGTTTGGCGGTGGCCAGGGA+AGG 0.537051 1:+16109057 MsaT001161.1:CDS
CCTCCTCCGCCGTCCAGCGG+TGG 0.540963 1:+16109136 MsaT001161.1:CDS
GAACCACCGCTGGACGGCGG+AGG 0.546537 1:-16109139 None:intergenic
ATGTTCTTCTTCTTAGCAGG+AGG 0.556263 1:+16108920 MsaT001161.1:CDS
CTTCCTCCTCCGCCGTCCAG+CGG 0.567042 1:+16109133 MsaT001161.1:CDS
CCACACCTGATTTCACCACC+TGG 0.568190 1:-16108961 None:intergenic
AACGTTGAACCACCGCTGGA+CGG 0.580920 1:-16109145 None:intergenic
TGTTCTTCTTCTTAGCAGGA+GGG 0.584246 1:+16108921 MsaT001161.1:CDS
CCAGGTGGTGAAATCAGGTG+TGG 0.601448 1:+16108961 MsaT001161.1:CDS
ATCACAGTACCGACATCGCA+AGG 0.607291 1:-16109176 None:intergenic
CAGGTGGTGAAATCAGGTGT+GGG 0.626180 1:+16108962 MsaT001161.1:CDS
TTCACGTTCTGTCCTTACTG+TGG 0.627118 1:+16109217 MsaT001161.1:CDS
TGGTGAAATCAGGTGTGGGA+AGG 0.629446 1:+16108966 MsaT001161.1:CDS
GTTGAACCACCGCTGGACGG+CGG 0.661244 1:-16109142 None:intergenic
AGAAAACCAGGTTCGCCAGG+TGG 0.662890 1:+16108946 MsaT001161.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 16108920 16109252 16108920 ID=MsaG001161
Chr1 mRNA 16108920 16109252 16108920 ID=MsaT001161.1;Parent=MsaG001161
Chr1 exon 16108920 16109252 16108920 ID=MsaT001161.1.exon1;Parent=MsaT001161.1
Chr1 CDS 16108920 16109252 16108920 ID=cds.MsaT001161.1;Parent=MsaT001161.1
Gene Sequence

>MsaT001161.1

ATGTTCTTCTTCTTAGCAGGAGGGTTAGAAAACCAGGTTCGCCAGGTGGTGAAATCAGGTGTGGGAAGGTGCATCAACTGCAATTCACGCGCTGATCTTGTTGAATACGATAAAGTTCTGAAGCTTTTCTTCGTTCCCGTTTGGCGGTGGCCAGGGAAGGAAACTCTCTTGTATTGTCAAGACTGCAAGTTCATGTTTCCTCAATCGCATTCCCTTCCTCCTCCGCCGTCCAGCGGTGGTTCAACGTTGCCGGAAGCCTTGCGATGTCGGTACTGTGATCGGAATGTAGCAGTTGATTTCACGTTCTGTCCTTACTGTGGTGAACAACTGTAA

Protein sequence

>MsaT001161.1

MFFFLAGGLENQVRQVVKSGVGRCINCNSRADLVEYDKVLKLFFVPVWRWPGKETLLYCQDCKFMFPQSHSLPPPPSSGGSTLPEALRCRYCDRNVAVDFTFCPYCGEQL*