AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG001213

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001213 MtrunA17_Chr1g0160761 75.862 116 25 2 62 174 282 397 6.93e-53 177
MsaG001213 MtrunA17_Chr1g0160761 76.667 60 14 0 1 60 1 60 1.34e-25 102
MsaG001213 MtrunA17_Chr1g0160661 76.724 116 24 2 62 174 299 414 1.69e-52 174
MsaG001213 MtrunA17_Chr1g0160661 43.750 112 51 3 1 105 27 133 5.02e-21 89.0
MsaG001213 MtrunA17_Chr1g0160561 76.316 114 24 2 64 174 295 408 3.90e-52 176
MsaG001213 MtrunA17_Chr1g0160561 55.932 59 25 1 2 60 7 64 8.62e-16 74.3
MsaG001213 MtrunA17_Chr1g0160531 69.106 123 29 2 61 174 64 186 2.47e-51 170
MsaG001213 MtrunA17_Chr1g0160721 76.316 114 24 2 64 174 300 413 4.26e-51 173
MsaG001213 MtrunA17_Chr1g0160721 51.786 112 42 3 1 105 12 118 2.43e-26 104
MsaG001213 MtrunA17_Chr1g0160701 72.414 116 29 2 61 174 293 407 6.42e-50 170
MsaG001213 MtrunA17_Chr1g0160701 84.615 39 6 0 17 55 32 70 5.19e-18 80.5
MsaG001213 MtrunA17_Chr1g0160711 70.940 117 31 2 61 174 274 390 9.69e-47 161
MsaG001213 MtrunA17_Chr1g0160711 86.111 36 4 1 21 55 17 52 6.42e-15 71.6
MsaG001213 MtrunA17_Chr1g0157951 56.780 118 48 2 60 174 126 243 2.19e-40 142
MsaG001213 MtrunA17_Chr1g0158131 60.360 111 43 1 61 170 150 260 2.34e-39 138
MsaG001213 MtrunA17_Chr1g0158761 61.905 105 37 2 73 174 293 397 1.71e-38 139
MsaG001213 MtrunA17_Chr1g0157811 58.879 107 42 1 70 174 156 262 2.03e-38 137
MsaG001213 MtrunA17_Chr3g0088321 61.682 107 38 2 70 174 10 115 2.27e-38 134
MsaG001213 MtrunA17_Chr1g0157791 59.813 107 41 1 70 174 343 449 2.76e-38 138
MsaG001213 MtrunA17_Chr1g0158091 62.376 101 37 1 70 170 29 128 4.21e-38 134
MsaG001213 MtrunA17_Chr1g0158151 62.136 103 39 0 68 170 340 442 7.65e-38 137
MsaG001213 MtrunA17_Chr1g0157991 56.250 112 48 1 60 170 339 450 1.80e-37 136
MsaG001213 MtrunA17_Chr1g0158491 59.375 96 38 1 75 170 64 158 4.17e-36 123
MsaG001213 MtrunA17_Chr6g0467711 59.813 107 40 2 70 174 358 463 1.29e-35 130
MsaG001213 MtrunA17_Chr1g0158411 59.813 107 40 2 70 174 362 467 2.01e-35 130
MsaG001213 MtrunA17_Chr1g0158751 57.407 108 42 3 70 174 52 158 6.64e-35 126
MsaG001213 MtrunA17_Chr1g0158041 58.416 101 41 1 70 170 348 447 8.68e-35 128
MsaG001213 MtrunA17_Chr1g0157861 57.522 113 42 3 60 170 383 491 1.05e-34 128
MsaG001213 MtrunA17_Chr1g0157911 59.322 118 42 4 62 174 345 461 1.58e-34 127
MsaG001213 MtrunA17_Chr4g0036991 56.757 111 47 1 61 170 260 370 2.08e-34 127
MsaG001213 MtrunA17_Chr1g0158191 57.426 101 42 1 70 170 348 447 2.84e-34 127
MsaG001213 MtrunA17_Chr1g0157931 60.577 104 38 2 69 170 227 329 3.53e-34 126
MsaG001213 MtrunA17_Chr1g0157881 59.615 104 39 2 69 170 420 522 4.60e-34 126
MsaG001213 MtrunA17_Chr1g0158301 59.091 110 36 3 62 170 349 450 1.84e-33 124
MsaG001213 MtrunA17_Chr1g0158661 56.481 108 43 3 70 174 326 432 3.28e-33 124
MsaG001213 MtrunA17_Chr1g0158571 54.783 115 47 4 64 174 162 275 4.41e-33 122
MsaG001213 MtrunA17_Chr1g0158541 60.204 98 37 2 74 170 356 452 1.62e-32 122
MsaG001213 MtrunA17_Chr1g0158631 55.357 112 47 3 61 170 330 440 4.98e-32 120
MsaG001213 MtrunA17_Chr1g0158441 59.783 92 34 2 85 174 1 91 2.36e-31 115
MsaG001213 MtrunA17_Chr1g0158341 58.696 92 35 2 85 174 1 91 4.86e-31 115
MsaG001213 MtrunA17_Chr7g0232421 46.018 113 58 1 61 170 7 119 1.22e-26 103
MsaG001213 MtrunA17_Chr1g0209471 49.495 99 47 1 72 170 24 119 2.58e-26 102
MsaG001213 MtrunA17_Chr7g0232441 39.869 153 73 5 32 170 232 379 3.09e-26 104
MsaG001213 MtrunA17_Chr1g0209401 53.333 90 42 0 81 170 21 110 3.10e-26 102
MsaG001213 MtrunA17_Chr1g0158511 46.364 110 58 1 61 170 226 334 6.79e-26 103
MsaG001213 MtrunA17_Chr1g0158471 45.455 110 59 1 61 170 226 334 8.47e-26 102
MsaG001213 MtrunA17_Chr1g0158321 53.659 82 38 0 89 170 9 90 1.27e-25 100
MsaG001213 MtrunA17_Chr1g0209481 49.495 99 45 2 73 170 170 264 1.60e-25 100
MsaG001213 MtrunA17_Chr1g0157941 44.037 109 58 1 62 170 210 315 1.67e-25 102
MsaG001213 MtrunA17_Chr6g0467701 52.439 82 39 0 89 170 9 90 2.79e-25 99.8
MsaG001213 MtrunA17_Chr1g0158711 53.659 82 38 0 89 170 236 317 6.50e-25 100
MsaG001213 MtrunA17_Chr1g0158391 51.765 85 41 0 86 170 229 313 6.73e-25 100
MsaG001213 MtrunA17_Chr7g0251061 50.000 90 43 1 88 175 322 411 8.78e-25 100
MsaG001213 MtrunA17_Chr3g0088341 53.659 82 38 0 89 170 253 334 1.05e-24 99.8
MsaG001213 MtrunA17_Chr1g0212821 52.941 85 40 0 89 173 57 141 1.16e-24 98.6
MsaG001213 MtrunA17_Chr6g0467661 52.439 82 39 0 89 170 239 320 1.23e-24 99.8
MsaG001213 MtrunA17_Chr6g0467681 52.439 82 39 0 89 170 239 320 1.30e-24 99.4
MsaG001213 MtrunA17_Chr6g0467641 51.220 82 40 0 89 170 168 249 1.49e-24 99.0
MsaG001213 MtrunA17_Chr4g0022331 35.417 192 104 6 2 175 406 595 2.32e-24 99.0
MsaG001213 MtrunA17_Chr7g0251081 49.438 89 43 1 89 175 100 188 4.83e-24 97.1
MsaG001213 MtrunA17_Chr1g0160581 36.129 155 86 2 27 170 209 361 6.32e-24 97.4
MsaG001213 MtrunA17_Chr1g0157871 51.220 82 40 0 89 170 236 317 1.19e-23 96.7
MsaG001213 MtrunA17_Chr1g0158311 53.659 82 38 0 89 170 263 344 1.44e-23 96.7
MsaG001213 MtrunA17_Chr8g0391231 55.294 85 38 0 89 173 310 394 1.51e-23 96.7
MsaG001213 MtrunA17_Chr1g0158531 46.847 111 56 2 61 170 238 346 2.93e-23 95.5
MsaG001213 MtrunA17_Chr6g0483811 49.412 85 43 0 89 173 34 118 3.81e-23 94.0
MsaG001213 MtrunA17_Chr1g0158611 51.220 82 40 0 89 170 26 107 4.01e-23 94.0
MsaG001213 MtrunA17_Chr7g0250741 47.253 91 46 1 87 175 507 597 5.25e-23 95.1
MsaG001213 MtrunA17_Chr1g0160681 47.727 88 44 1 89 174 40 127 5.46e-23 94.0
MsaG001213 MtrunA17_Chr1g0158771 52.439 82 39 0 89 170 264 345 5.57e-23 94.7
MsaG001213 MtrunA17_Chr1g0158651 51.220 82 40 0 89 170 282 363 5.71e-23 94.7
MsaG001213 MtrunA17_Chr7g0251071 43.689 103 54 2 75 175 316 416 8.54e-23 94.4
MsaG001213 MtrunA17_Chr7g0251051 44.444 99 53 1 75 173 276 372 1.03e-22 94.0
MsaG001213 MtrunA17_Chr6g0483851 51.220 82 40 0 89 170 386 467 1.05e-22 94.0
MsaG001213 MtrunA17_Chr7g0251101 43.089 123 65 3 54 173 298 418 1.18e-22 94.0
MsaG001213 MtrunA17_Chr7g0251001 45.055 91 48 1 87 175 32 122 1.38e-22 92.8
MsaG001213 MtrunA17_Chr1g0160771 42.982 114 60 2 63 174 253 363 1.98e-22 93.2
MsaG001213 MtrunA17_Chr1g0209411 46.667 90 48 0 81 170 261 350 3.86e-22 91.7
MsaG001213 MtrunA17_Chr6g0483791 48.837 86 44 0 88 173 344 429 5.70e-22 92.0
MsaG001213 MtrunA17_Chr1g0209511 49.412 85 43 0 86 170 289 373 9.25e-22 91.3
MsaG001213 MtrunA17_Chr1g0157801 50.000 82 41 0 89 170 273 354 9.62e-22 91.3
MsaG001213 MtrunA17_Chr7g0250931 43.158 95 51 2 84 175 518 612 1.23e-21 91.3
MsaG001213 MtrunA17_Chr1g0158051 51.220 82 40 0 89 170 279 360 1.25e-21 90.9
MsaG001213 MtrunA17_Chr6g0484051 39.316 117 61 2 67 173 292 408 1.87e-21 90.5
MsaG001213 MtrunA17_Chr6g0484071 48.235 85 44 0 89 173 34 118 2.90e-21 89.0
MsaG001213 MtrunA17_Chr1g0209501 42.373 118 57 3 63 173 255 368 3.64e-21 89.7
MsaG001213 MtrunA17_Chr6g0483821 47.674 86 45 0 88 173 334 419 4.52e-21 89.4
MsaG001213 MtrunA17_Chr6g0483981 47.059 85 45 0 89 173 243 327 4.70e-21 89.4
MsaG001213 MtrunA17_Chr4g0037001 48.235 85 44 0 86 170 280 364 4.94e-21 89.4
MsaG001213 MtrunA17_Chr6g0484041 47.059 85 45 0 89 173 298 382 5.05e-21 89.4
MsaG001213 MtrunA17_Chr6g0484021 44.828 87 48 0 87 173 280 366 5.73e-21 89.0
MsaG001213 MtrunA17_Chr1g0157971 47.561 82 43 0 89 170 277 358 9.17e-21 88.6
MsaG001213 MtrunA17_Chr1g0157781 48.780 82 42 0 89 170 278 359 1.11e-20 88.2
MsaG001213 MtrunA17_Chr1g0158101 50.000 82 41 0 89 170 283 364 1.64e-20 87.8
MsaG001213 MtrunA17_Chr1g0160731 47.561 82 43 0 89 170 272 353 2.24e-20 87.4
MsaG001213 MtrunA17_Chr7g0238401 38.168 131 62 5 52 170 280 403 4.12e-20 86.7
MsaG001213 MtrunA17_Chr1g0158181 48.780 82 42 0 89 170 301 382 4.47e-20 86.7
MsaG001213 MtrunA17_Chr7g0253461 45.333 75 40 1 90 163 179 253 1.43e-17 77.4
MsaG001213 MtrunA17_Chr1g0208841 47.475 99 49 1 72 170 24 119 1.12e-16 75.9
MsaG001213 MtrunA17_Chr3g0137741 41.121 107 53 2 70 170 446 548 3.11e-16 75.5
MsaG001213 MtrunA17_Chr6g0484031 44.444 72 40 0 89 160 198 269 4.02e-16 75.1
MsaG001213 MtrunA17_Chr2g0318171 40.594 101 59 1 70 170 438 537 4.63e-16 75.1
MsaG001213 MtrunA17_Chr1g0149381 42.857 84 47 1 87 170 476 558 1.64e-15 73.6
MsaG001213 MtrunA17_Chr2g0318191 46.479 71 38 0 100 170 1 71 3.14e-15 70.1
MsaG001213 MtrunA17_Chr2g0314611 38.144 97 60 0 74 170 445 541 7.13e-15 71.6
MsaG001213 MtrunA17_Chr6g0467281 43.421 76 41 1 101 174 474 549 9.60e-15 71.2
MsaG001213 MtrunA17_Chr1g0202331 46.479 71 37 1 101 170 519 589 1.07e-14 71.2
MsaG001213 MtrunA17_Chr2g0333091 35.088 114 66 3 62 170 438 548 2.57e-14 70.1
MsaG001213 MtrunA17_Chr2g0323301 44.928 69 38 0 102 170 483 551 3.57e-14 69.7
MsaG001213 MtrunA17_Chr4g0048951 43.373 83 41 3 93 170 94 175 3.74e-14 69.3
MsaG001213 MtrunA17_Chr2g0297921 40.698 86 50 1 86 170 116 201 4.58e-14 68.9
MsaG001213 MtrunA17_Chr2g0306811 38.211 123 65 5 57 170 39 159 5.92e-14 68.9
MsaG001213 MtrunA17_Chr2g0297961 40.000 85 47 2 89 170 49 132 6.66e-14 68.6
MsaG001213 MtrunA17_Chr6g0467301 42.105 76 42 1 101 174 479 554 8.96e-14 68.6
MsaG001213 MtrunA17_Chr8g0358821 35.556 135 73 5 44 170 619 747 9.95e-14 68.2
MsaG001213 MtrunA17_Chr6g0455651 41.429 70 40 1 102 170 104 173 1.20e-13 67.8
MsaG001213 MtrunA17_Chr1g0161631 42.857 70 40 0 101 170 460 529 1.21e-13 68.2
MsaG001213 MtrunA17_Chr7g0250901 42.424 66 36 1 112 175 1 66 1.56e-13 64.7
MsaG001213 MtrunA17_Chr4g0023071 40.580 69 41 0 102 170 484 552 1.94e-13 67.4
MsaG001213 MtrunA17_Chr8g0348661 37.234 94 50 2 81 170 454 542 2.08e-13 67.4
MsaG001213 MtrunA17_Chr3g0109431 45.946 74 36 2 101 170 313 386 2.65e-13 67.0
MsaG001213 MtrunA17_Chr3g0109461 47.297 74 35 2 101 170 325 398 2.77e-13 67.0
MsaG001213 MtrunA17_Chr0c04g0492001 33.663 101 64 2 70 170 480 577 3.61e-13 66.6
MsaG001213 MtrunA17_Chr0c04g0492031 33.663 101 64 2 70 170 480 577 3.79e-13 66.6
MsaG001213 MtrunA17_Chr3g0134291 33.663 101 64 2 70 170 480 577 3.82e-13 66.6
MsaG001213 MtrunA17_Chr3g0109411 48.000 75 33 3 101 170 310 383 7.52e-13 65.9
MsaG001213 MtrunA17_Chr2g0297911 38.095 84 50 1 89 170 50 133 8.40e-13 65.5
MsaG001213 MtrunA17_Chr2g0319101 42.857 70 39 1 102 170 100 169 9.19e-13 65.5
MsaG001213 MtrunA17_Chr1g0175451 42.857 84 43 3 97 175 309 392 9.70e-13 65.5
MsaG001213 MtrunA17_Chr7g0237351 42.647 68 39 0 103 170 502 569 1.33e-12 65.1
MsaG001213 MtrunA17_Chr2g0297951 36.735 98 59 2 74 170 95 190 1.86e-12 64.3
MsaG001213 MtrunA17_Chr1g0175411 36.283 113 61 6 73 175 284 395 2.10e-12 64.3
MsaG001213 MtrunA17_Chr4g0044691 28.906 128 74 3 60 170 255 382 2.17e-12 64.3
MsaG001213 MtrunA17_Chr8g0358781 47.297 74 36 2 100 170 329 402 2.29e-12 64.3
MsaG001213 MtrunA17_Chr2g0323341 34.694 98 56 1 73 170 376 465 4.11e-12 63.5
MsaG001213 MtrunA17_Chr3g0134321 39.706 68 41 0 103 170 393 460 4.69e-12 63.5
MsaG001213 MtrunA17_Chr7g0234561 41.176 68 40 0 103 170 442 509 4.88e-12 63.5
MsaG001213 MtrunA17_Chr7g0261331 31.405 121 68 4 63 170 872 990 4.97e-12 63.5
MsaG001213 MtrunA17_Chr3g0114851 43.056 72 40 1 100 170 508 579 6.19e-12 63.2
MsaG001213 MtrunA17_Chr3g0106181 38.235 68 42 0 103 170 48 115 6.51e-12 62.8
MsaG001213 MtrunA17_Chr3g0106141 36.765 68 43 0 103 170 504 571 8.14e-12 62.8
MsaG001213 MtrunA17_Chr7g0237331 42.647 68 39 0 103 170 502 569 1.24e-11 62.4
MsaG001213 MtrunA17_Chr4g0053161 39.706 68 41 0 103 170 521 588 1.27e-11 62.0
MsaG001213 MtrunA17_Chr3g0106191 38.235 68 42 0 103 170 415 482 1.47e-11 62.0
MsaG001213 MtrunA17_Chr7g0236551 31.858 113 72 3 61 170 436 546 1.89e-11 61.6
MsaG001213 MtrunA17_Chr7g0236511 29.204 113 75 3 61 170 449 559 1.90e-11 61.6
MsaG001213 MtrunA17_Chr3g0106151 38.235 68 42 0 103 170 494 561 1.95e-11 61.6
MsaG001213 MtrunA17_Chr7g0236881 35.593 118 66 4 67 175 563 679 2.15e-11 61.6
MsaG001213 MtrunA17_Chr7g0237341 44.118 68 38 0 103 170 501 568 2.15e-11 61.6
MsaG001213 MtrunA17_Chr6g0484091 41.935 62 36 0 112 173 1 62 2.25e-11 57.8
MsaG001213 MtrunA17_Chr3g0123141 35.354 99 54 3 77 170 572 665 2.90e-11 61.2
MsaG001213 MtrunA17_Chr8g0360591 44.286 70 36 2 104 170 32 101 3.51e-11 60.8
MsaG001213 MtrunA17_Chr3g0106201 38.235 68 42 0 103 170 499 566 3.60e-11 60.8
MsaG001213 MtrunA17_Chr5g0443531 45.714 70 35 2 104 170 665 734 4.51e-11 60.5
MsaG001213 MtrunA17_Chr4g0063251 38.750 80 48 1 91 170 81 159 4.54e-11 60.5
MsaG001213 MtrunA17_Chr1g0153851 38.356 73 44 1 102 173 37 109 6.19e-11 59.7
MsaG001213 MtrunA17_Chr6g0475091 36.667 90 52 3 90 174 556 645 6.27e-11 60.1
MsaG001213 MtrunA17_Chr8g0341361 34.426 122 66 6 62 175 137 252 6.38e-11 60.1
MsaG001213 MtrunA17_Chr8g0376131 44.286 70 36 2 104 170 40 109 7.04e-11 59.7
MsaG001213 MtrunA17_Chr3g0106131 35.294 68 44 0 103 170 501 568 8.84e-11 59.7
MsaG001213 MtrunA17_Chr7g0263591 39.706 68 40 1 104 170 594 661 9.21e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001213 AT1G70250.1 40.351 114 63 3 65 175 412 523 3.38e-19 84.3
MsaG001213 AT5G38240.3 37.838 111 63 1 63 173 226 330 7.37e-19 83.6
MsaG001213 AT5G38240.1 53.521 71 33 0 103 173 324 394 8.25e-19 83.2
MsaG001213 AT5G38240.2 37.838 111 63 1 63 173 272 376 8.60e-19 83.2
MsaG001213 AT1G66980.4 47.619 84 41 2 90 170 761 844 9.15e-19 83.2
MsaG001213 AT1G66980.3 47.619 84 41 2 90 170 805 888 9.19e-19 83.2
MsaG001213 AT1G66980.1 47.619 84 41 2 90 170 778 861 9.53e-19 83.2
MsaG001213 AT1G66980.2 47.619 84 41 2 90 170 807 890 9.83e-19 83.2
MsaG001213 AT5G38260.1 39.873 158 65 9 33 173 236 380 1.02e-18 83.2
MsaG001213 AT5G38250.1 51.429 70 34 0 104 173 304 373 3.43e-18 81.6
MsaG001213 AT1G66910.2 32.867 143 84 4 40 173 265 404 2.08e-17 79.3
MsaG001213 AT5G24080.2 39.823 113 63 4 63 174 482 590 4.94e-17 78.2
MsaG001213 AT1G66910.1 42.857 77 43 1 98 173 331 407 6.55e-17 77.8
MsaG001213 AT5G38280.1 46.835 79 39 2 100 175 317 395 7.63e-17 77.8
MsaG001213 AT5G38280.2 46.835 79 39 2 100 175 317 395 7.65e-17 77.8
MsaG001213 AT5G24080.3 40.367 109 61 3 63 170 355 460 1.21e-16 77.0
MsaG001213 AT5G24080.1 40.367 109 61 3 63 170 355 460 1.21e-16 77.0
MsaG001213 AT5G39020.1 39.326 89 47 2 94 175 471 559 1.77e-16 76.6
MsaG001213 AT5G39030.2 47.143 70 37 0 104 173 482 551 9.31e-16 74.7
MsaG001213 AT5G39030.1 47.761 67 35 0 104 170 488 554 9.32e-16 74.7
MsaG001213 AT1G66920.1 45.833 72 38 1 103 173 288 359 1.30e-15 73.9
MsaG001213 AT1G66920.2 45.833 72 38 1 103 173 296 367 1.33e-15 73.9
MsaG001213 AT1G67000.1 40.964 83 47 2 93 173 534 616 1.98e-15 73.6
MsaG001213 AT4G18250.1 43.243 74 40 1 99 170 340 413 2.44e-15 73.2
MsaG001213 AT4G32300.1 39.252 107 55 3 70 170 447 549 2.99e-15 73.2
MsaG001213 AT1G34300.1 43.421 76 41 1 101 174 471 546 5.86e-15 72.4
MsaG001213 AT5G54590.1 39.535 86 48 2 89 170 85 170 2.18e-14 69.3
MsaG001213 AT1G66930.2 39.744 78 45 2 98 173 538 615 2.31e-14 70.5
MsaG001213 AT1G66930.1 39.744 78 45 2 98 173 329 406 2.57e-14 70.5
MsaG001213 AT1G36005.1 42.254 71 40 1 103 173 8 77 5.41e-14 66.6
MsaG001213 AT5G54590.3 39.535 86 48 2 89 170 85 170 9.87e-14 68.6
MsaG001213 AT5G54590.4 39.535 86 48 2 89 170 85 170 9.87e-14 68.6
MsaG001213 AT5G54590.2 39.535 86 48 2 89 170 85 170 9.87e-14 68.6
MsaG001213 AT1G56130.2 34.815 135 74 5 44 170 623 751 5.05e-13 66.6
MsaG001213 AT1G56130.3 34.815 135 74 5 44 170 424 552 5.72e-13 66.6
MsaG001213 AT1G56130.1 34.815 135 74 5 44 170 475 603 6.23e-13 66.2
MsaG001213 AT5G06740.1 36.842 114 64 6 62 170 276 386 1.28e-12 65.5
MsaG001213 AT5G06740.2 36.842 114 64 6 62 170 288 398 1.29e-12 65.5
MsaG001213 AT1G56145.2 45.333 75 38 2 99 170 670 744 1.59e-12 65.1
MsaG001213 AT1G56145.1 45.333 75 38 2 99 170 670 744 1.65e-12 65.1
MsaG001213 AT1G56145.3 45.333 75 38 2 99 170 567 641 1.69e-12 65.1
MsaG001213 AT2G19130.1 44.776 67 37 0 104 170 483 549 1.78e-12 65.1
MsaG001213 AT1G61460.1 33.628 113 70 3 61 170 401 511 2.05e-12 64.7
MsaG001213 AT5G15730.3 43.478 69 38 1 103 170 103 171 2.55e-12 64.3
MsaG001213 AT5G15730.2 43.478 69 38 1 103 170 103 171 2.55e-12 64.3
MsaG001213 AT5G15730.1 43.478 69 38 1 103 170 103 171 2.67e-12 64.3
MsaG001213 AT1G56120.2 34.848 132 78 5 44 170 621 749 3.66e-12 64.3
MsaG001213 AT1G56120.1 34.848 132 78 5 44 170 639 767 3.66e-12 64.3
MsaG001213 AT1G61490.3 31.034 116 77 2 61 173 285 400 3.82e-12 63.9
MsaG001213 AT1G56140.1 35.385 130 76 5 46 170 624 750 3.87e-12 64.3
MsaG001213 AT1G61490.6 31.034 116 77 2 61 173 409 524 4.30e-12 63.9
MsaG001213 AT1G61490.7 31.034 116 77 2 61 173 409 524 4.30e-12 63.9
MsaG001213 AT1G61490.4 31.034 116 77 2 61 173 435 550 4.32e-12 63.9
MsaG001213 AT1G61490.1 31.034 116 77 2 61 173 435 550 4.32e-12 63.9
MsaG001213 AT1G61490.2 31.034 116 77 2 61 173 435 550 4.32e-12 63.9
MsaG001213 AT1G61490.5 31.034 116 77 2 61 173 435 550 4.32e-12 63.9
MsaG001213 AT1G56120.3 34.848 132 78 5 44 170 473 601 4.59e-12 63.9
MsaG001213 AT1G79620.3 42.857 70 37 2 104 170 626 695 7.70e-12 63.2
MsaG001213 AT1G79620.2 42.857 70 37 2 104 170 626 695 7.82e-12 63.2
MsaG001213 AT4G23190.3 34.513 113 68 3 61 170 220 329 9.27e-12 62.8
MsaG001213 AT4G23190.4 34.513 113 68 3 61 170 220 329 9.27e-12 62.8
MsaG001213 AT5G35370.1 40.278 72 42 1 100 170 501 572 1.01e-11 62.8
MsaG001213 AT3G19300.1 35.802 81 51 1 91 170 303 383 1.10e-11 62.8
MsaG001213 AT4G23190.1 34.513 113 68 3 61 170 298 407 1.11e-11 62.8
MsaG001213 AT3G46370.2 40.580 69 40 1 103 170 476 544 1.18e-11 62.8
MsaG001213 AT3G46370.1 40.580 69 40 1 103 170 476 544 1.18e-11 62.8
MsaG001213 AT1G61440.1 34.483 116 68 4 61 173 428 538 1.26e-11 62.8
MsaG001213 AT4G23190.2 34.513 113 68 3 61 170 298 407 1.34e-11 62.4
MsaG001213 AT2G37050.2 39.706 68 40 1 104 170 593 660 1.58e-11 62.4
MsaG001213 AT2G37050.4 39.706 68 40 1 104 170 594 661 1.58e-11 62.4
MsaG001213 AT1G29720.1 40.506 79 44 2 95 170 652 730 1.89e-11 62.0
MsaG001213 AT1G49730.5 37.681 69 42 1 103 170 346 414 1.93e-11 62.0
MsaG001213 AT1G49730.2 37.681 69 42 1 103 170 316 384 1.96e-11 62.0
MsaG001213 AT1G61430.11 34.862 109 66 3 70 173 418 526 2.06e-11 62.0
MsaG001213 AT1G61430.12 34.862 109 66 3 70 173 418 526 2.06e-11 62.0
MsaG001213 AT1G61430.13 34.862 109 66 3 70 173 418 526 2.06e-11 62.0
MsaG001213 AT1G61400.2 32.759 116 75 2 61 173 445 560 2.42e-11 61.6
MsaG001213 AT1G49730.3 37.681 69 42 1 103 170 260 328 2.42e-11 61.6
MsaG001213 AT1G61430.9 34.862 109 66 3 70 173 441 549 2.44e-11 61.6
MsaG001213 AT1G49730.4 37.681 69 42 1 103 170 316 384 2.46e-11 61.6
MsaG001213 AT1G61430.4 34.862 109 66 3 70 173 418 526 2.57e-11 61.6
MsaG001213 AT2G43700.3 47.222 72 36 2 101 170 297 368 2.59e-11 61.6
MsaG001213 AT2G43700.5 47.222 72 36 2 101 170 297 368 2.59e-11 61.6
MsaG001213 AT2G43700.2 47.222 72 36 2 101 170 297 368 2.59e-11 61.6
MsaG001213 AT2G43700.4 47.222 72 36 2 101 170 297 368 2.59e-11 61.6
MsaG001213 AT1G61430.10 34.862 109 66 3 70 173 418 526 2.59e-11 61.6
MsaG001213 AT1G61430.2 34.862 109 66 3 70 173 441 549 2.60e-11 61.6
MsaG001213 AT1G61430.6 34.862 109 66 3 70 173 441 549 2.60e-11 61.6
MsaG001213 AT1G61430.3 34.862 109 66 3 70 173 450 558 2.61e-11 61.6
MsaG001213 AT2G43700.1 47.222 72 36 2 101 170 321 392 2.66e-11 61.6
MsaG001213 AT1G49730.1 37.681 69 42 1 103 170 346 414 2.79e-11 61.6
MsaG001213 AT1G61400.1 32.759 116 75 2 61 173 445 560 2.82e-11 61.6
MsaG001213 AT1G61430.8 34.862 109 66 3 70 173 441 549 3.31e-11 61.2
MsaG001213 AT1G61430.7 34.862 109 66 3 70 173 441 549 3.31e-11 61.2
MsaG001213 AT4G00340.2 44.118 68 37 1 104 170 451 518 4.44e-11 60.8
MsaG001213 AT4G00340.1 44.118 68 37 1 104 170 472 539 4.46e-11 60.8
MsaG001213 AT2G37050.1 39.706 68 40 1 104 170 593 660 4.54e-11 60.8
MsaG001213 AT2G37050.3 39.706 68 40 1 104 170 594 661 4.58e-11 60.8
MsaG001213 AT1G79620.5 42.857 70 37 2 104 170 652 721 5.23e-11 60.8
MsaG001213 AT1G79620.1 40.789 76 40 3 104 174 626 701 5.42e-11 60.8
MsaG001213 AT1G61440.3 35.000 120 67 5 61 173 428 543 5.74e-11 60.8
MsaG001213 AT3G46330.1 39.130 69 41 1 103 170 555 623 6.92e-11 60.5
MsaG001213 AT3G59740.1 38.596 114 60 5 61 170 284 391 7.19e-11 60.5
MsaG001213 AT3G46330.2 39.130 69 41 1 103 170 531 599 7.23e-11 60.5
MsaG001213 AT5G20050.1 37.500 80 49 1 91 170 81 159 7.34e-11 60.1
MsaG001213 AT1G61420.3 31.818 132 77 4 52 170 270 401 7.76e-11 60.1
MsaG001213 AT1G61420.1 31.818 132 77 4 52 170 420 551 9.01e-11 60.1
MsaG001213 AT1G16670.1 41.429 70 38 2 104 170 29 98 9.22e-11 59.7

Find 34 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTTGGAGCATCATTTAT+TGG 0.228922 1:-16962097 MsaT001213.1:CDS
GACGCAGTTATACTTGTTCT+TGG 0.278072 1:-16962112 MsaT001213.1:intron
TCTTGTAGCAGTAAAATTAT+TGG 0.278750 1:-16961879 MsaT001213.1:CDS
CTCTTGTCACCACATTCTTC+TGG 0.284196 1:+16975810 None:intergenic
ATAACATCAGCCACCCTTTC+AGG 0.289456 1:-16975845 MsaT001213.1:CDS
TCTTTGTAAGAGTACCTTAC+TGG 0.347980 1:+16961989 None:intergenic
TCATACATTGATAAATGTTT+CGG 0.415755 1:+16962052 None:intergenic
AAACTAGGAAGTGGAGGTTA+TGG 0.417571 1:-16961935 MsaT001213.1:CDS
AACTAGGAAGTGGAGGTTAT+GGG 0.439959 1:-16961934 MsaT001213.1:CDS
AAAATCTTGACCGTCGGACT+TGG 0.443548 1:+16961850 None:intergenic
ATCAATGAAATTGCTACCAT+TGG 0.452414 1:-16961827 MsaT001213.1:CDS
TAACAGCACGACAAGGGTTA+AGG 0.463192 1:+16975944 None:intergenic
TAATAGCATTGTGTCATTAA+CGG 0.489327 1:-16961489 None:intergenic
AAACAATTCCAGACAAAACT+AGG 0.497473 1:-16961950 MsaT001213.1:CDS
ACAATAGCATCATGCCAGTA+AGG 0.519215 1:-16962003 MsaT001213.1:CDS
TTCCAGACAAAACTAGGAAG+TGG 0.545868 1:-16961944 MsaT001213.1:CDS
ATGAAATTGCTACCATTGGT+AGG 0.546476 1:-16961823 MsaT001213.1:CDS
TTCTCGTACAACAAAATGCA+TGG 0.578389 1:-16975909 MsaT001213.1:CDS
AACAAGAGTCATGTTCAAGA+AGG 0.596613 1:-16975878 MsaT001213.1:CDS
TGAGTTGTACCACATTAAGA+TGG 0.602790 1:+16961795 None:intergenic
ATTGATAAAATCTTGACCGT+CGG 0.603445 1:+16961844 None:intergenic
CAGAAGAATGTGGTGACAAG+AGG 0.621774 1:-16975809 MsaT001213.1:intron
TTCAAAGGACAGCTTCGAAG+TGG 0.624288 1:-16961905 MsaT001213.1:CDS
GTATTAGTAACAGCACGACA+AGG 0.628217 1:+16975937 None:intergenic
AAACATTTATCAATGTATGA+CGG 0.629833 1:-16962049 MsaT001213.1:CDS
GAGTCATGTTCAAGAAGGTG+TGG 0.631192 1:-16975873 MsaT001213.1:CDS
AGAGGTGGAAGAGACTGTGC+TGG 0.635733 1:-16971966 MsaT001213.1:intron
CAGACAAAACTAGGAAGTGG+AGG 0.642931 1:-16961941 MsaT001213.1:CDS
AAGATGGTGAATCCTACCAA+TGG 0.650697 1:+16961811 None:intergenic
TATTAGTAACAGCACGACAA+GGG 0.651789 1:+16975938 None:intergenic
TAGGATTCACCATCTTAATG+TGG 0.652397 1:-16961804 MsaT001213.1:intron
TTGGACAAAGCCAAGTCCGA+CGG 0.652784 1:-16961860 MsaT001213.1:CDS
AAAGACAGTCCAGAAGAATG+TGG 0.689791 1:-16975819 MsaT001213.1:CDS
CTGGCATGATGCTATTGTCG+CGG 0.695354 1:+16962008 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 16961492 16975973 16961492 ID=MsaG001213
Chr1 mRNA 16961492 16975973 16961492 ID=MsaT001213.1;Parent=MsaG001213
Chr1 exon 16961492 16961512 16961492 ID=MsaT001213.1.exon4;Parent=MsaT001213.1
Chr1 CDS 16961492 16961512 16961492 ID=cds.MsaT001213.1;Parent=MsaT001213.1
Chr1 exon 16961805 16962127 16961805 ID=MsaT001213.1.exon3;Parent=MsaT001213.1
Chr1 CDS 16961805 16962127 16961805 ID=cds.MsaT001213.1;Parent=MsaT001213.1
Chr1 exon 16971967 16971986 16971967 ID=MsaT001213.1.exon2;Parent=MsaT001213.1
Chr1 CDS 16971967 16971986 16971967 ID=cds.MsaT001213.1;Parent=MsaT001213.1
Chr1 exon 16975810 16975973 16975810 ID=MsaT001213.1.exon1;Parent=MsaT001213.1
Chr1 CDS 16975810 16975973 16975810 ID=cds.MsaT001213.1;Parent=MsaT001213.1
Gene Sequence

>MsaT001213.1

ATGTCTTCCTTAACCCTTGTCGTGCTGTTACTAATACTGATATTCTCGTACAACAAAATGCATGGTGATGAACAACAAGAGTCATGTTCAAGAAGGTGTGGTGTTCATAACATCAGCCACCCTTTCAGGCTAAAAGACAGTCCAGAAGAATGTGGTGACAAGAGAGGTGGAAGAGACTGTGCTGTTATACTTGTTCTTGGAGCATCATTTATTGGATTTTTAATTTACAAAACTCGACCGAAACATTTATCAATGTATGACGGCATTGAAAGTTTTCTACGCCGCGACAATAGCATCATGCCAGTAAGGTACTCTTACAAAGACATAAAAAAGATAACAAAACAATTCCAGACAAAACTAGGAAGTGGAGGTTATGGGTCAGTTTTCAAAGGACAGCTTCGAAGTGGTCGTCTTGTAGCAGTAAAATTATTGGACAAAGCCAAGTCCGACGGTCAAGATTTTATCAATGAAATTGCTACCATTGGTAGGATTCACCATCTTAATGTGGTAATAGCATTGTGTCATTAA
Protein sequence

>MsaT001213.1

MSSLTLVVLLLILIFSYNKMHGDEQQESCSRRCGVHNISHPFRLKDSPEECGDKRGGRDCAVILVLGASFIGFLIYKTRPKHLSMYDGIESFLRRDNSIMPVRYSYKDIKKITKQFQTKLGSGGYGSVFKGQLRSGRLVAVKLLDKAKSDGQDFINEIATIGRIHHLNVVIALCH*