AlfalfaGEDB | MsaG001296

M. sativa ssp. caerulea / MsaG001296

KEGG: -
GO: -
PFAM: PF04640.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001296	KEH40658.1	87.273	110	12	1	3	112	58	165	1.19e-60	194

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001296	tr\|A0A072VGU3\|A0A072VGU3_MEDTR	87.273	110	12	1	3	112	58	165	5.71e-61	194

TFs/TRs:

Gene ID	Type	Classification
MsaG001296	TF	PLATZ

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000118	MsaG001296	0.806944	1.091365e-49	1.731823e-47
MsaG000153	MsaG001296	0.804974	2.819958e-49	4.272677e-47
MsaG000523	MsaG001296	0.813305	4.716940e-51	8.737834e-49
MsaG001027	MsaG001296	0.825474	8.162832e-54	2.080287e-51
MsaG001296	MsaG002350	0.833302	1.045351e-55	3.329353e-53
MsaG001296	MsaG002528	0.800760	2.073312e-48	2.851806e-46
MsaG001296	MsaG003289	0.816638	8.664295e-52	1.746015e-49
MsaG001296	MsaG003557	0.808627	4.808399e-50	7.943944e-48
MsaG001296	MsaG003834	0.809184	3.659967e-50	6.128120e-48
MsaG001296	MsaG004297	0.813139	5.126136e-51	9.456976e-49
MsaG001296	MsaG004428	0.817222	6.416275e-52	1.312682e-49
MsaG001296	MsaG004432	0.811385	1.232960e-50	2.177986e-48
MsaG001296	MsaG004656	0.817845	4.650158e-52	9.667121e-50
MsaG001296	MsaG004757	0.818081	4.114564e-52	8.606025e-50
MsaG001296	MsaG004849	0.812649	6.555839e-51	1.194743e-48
MsaG001296	MsaG004913	0.857989	2.186286e-62	1.575845e-59
MsaG001296	MsaG005379	0.823203	2.775523e-53	6.648681e-51
MsaG001296	MsaG005641	0.811903	9.521396e-51	1.703495e-48
MsaG001296	MsaG006072	0.835897	2.345265e-56	8.069554e-54
MsaG001296	MsaG006127	0.840004	2.085546e-57	8.142505e-55
MsaG001296	MsaG006240	0.801074	1.789686e-48	2.479084e-46
MsaG001296	MsaG006318	0.815057	1.943173e-51	3.761696e-49
MsaG001296	MsaG006517	0.807720	7.488184e-50	1.210430e-47
MsaG001296	MsaG006798	0.838952	3.899994e-57	1.473411e-54
MsaG001296	MsaG006979	0.806371	1.440471e-49	2.255176e-47
MsaG001296	MsaG007080	0.802828	7.838290e-49	1.130017e-46
MsaG001296	MsaG007175	0.832886	1.325576e-55	4.170484e-53
MsaG001296	MsaG007291	0.801842	1.247988e-48	1.759146e-46
MsaG001296	MsaG007601	0.819117	2.401251e-52	5.159931e-50
MsaG001296	MsaG007990	0.803700	5.182849e-49	7.624173e-47
MsaG001296	MsaG008412	0.827008	3.535459e-54	9.402651e-52
MsaG001296	MsaG008682	0.803255	6.401502e-49	9.320434e-47
MsaG001296	MsaG008863	0.802110	1.099870e-48	1.559795e-46
MsaG001296	MsaG009261	0.826483	4.712019e-54	1.235071e-51
MsaG001296	MsaG009764	0.809203	3.625684e-50	6.073414e-48
MsaG001296	MsaG010328	0.808493	5.135461e-50	8.456875e-48
MsaG001296	MsaG010372	0.801458	1.495236e-48	2.089315e-46
MsaG001296	MsaG011134	0.815475	1.571217e-51	3.073950e-49
MsaG001296	MsaG011439	0.831828	2.416018e-55	7.371397e-53
MsaG001296	MsaG011508	0.813297	4.735172e-51	8.769931e-49
MsaG001296	MsaG012081	0.824401	1.458476e-53	3.609265e-51
MsaG001296	MsaG012497	0.825427	8.372412e-54	2.130939e-51
MsaG001296	MsaG012498	0.801001	1.852660e-48	2.562084e-46
MsaG001296	MsaG012528	0.812012	9.018957e-51	1.617876e-48
MsaG001296	MsaG013230	0.805925	1.786140e-49	2.766931e-47
MsaG001296	MsaG013266	0.805466	2.227155e-49	3.413203e-47
MsaG001296	MsaG013884	0.806429	1.400149e-49	2.195143e-47
MsaG001296	MsaG014808	0.800499	2.341845e-48	3.202189e-46
MsaG001296	MsaG015446	0.801318	1.596283e-48	2.223475e-46
MsaG001296	MsaG015853	0.830835	4.227580e-55	1.253085e-52
MsaG001296	MsaG016250	0.811878	9.643579e-51	1.724262e-48
MsaG001296	MsaG016406	0.831246	3.356582e-55	1.006702e-52
MsaG001296	MsaG016946	0.827391	2.864924e-54	7.701992e-52
MsaG001296	MsaG017023	0.831244	3.358999e-55	1.007391e-52
MsaG001296	MsaG017083	0.817954	4.396022e-52	9.164533e-50
MsaG001296	MsaG017378	0.832269	1.882341e-55	5.816639e-53
MsaG001296	MsaG017504	0.808640	4.777663e-50	7.895690e-48
MsaG001296	MsaG017839	0.813072	5.303617e-51	9.768137e-49
MsaG001296	MsaG017907	0.804155	4.172218e-49	6.202712e-47
MsaG001296	MsaG017888	0.810321	2.090104e-50	3.597344e-48
MsaG001296	MsaG018006	0.810314	2.097354e-50	3.609210e-48
MsaG001296	MsaG018069	0.800451	2.395533e-48	3.272077e-46
MsaG001296	MsaG018259	0.808301	5.639748e-50	9.244557e-48
MsaG001296	MsaG018484	0.804251	3.984649e-49	5.937076e-47
MsaG001296	MsaG018876	0.825037	1.034361e-53	2.604584e-51
MsaG001296	MsaG018897	0.808752	4.523268e-50	7.495704e-48
MsaG001296	MsaG019122	0.803697	5.189152e-49	7.632961e-47
MsaG001296	MsaG019589	0.812478	7.142992e-51	1.296266e-48
MsaG001296	MsaG019676	0.810359	2.050868e-50	3.533177e-48
MsaG001296	MsaG020712	0.833576	8.941285e-56	2.870750e-53
MsaG001296	MsaG020885	0.841257	9.831185e-58	3.992802e-55
MsaG001296	MsaG021557	0.803537	5.598425e-49	8.204632e-47
MsaG001296	MsaG022112	0.850376	3.367992e-60	1.848918e-57
MsaG001296	MsaG022782	0.817526	5.484805e-52	1.130888e-49
MsaG001296	MsaG023415	0.803298	6.270927e-49	9.139409e-47
MsaG001296	MsaG023475	0.801525	1.448439e-48	2.027027e-46
MsaG001296	MsaG023663	0.829521	8.820031e-55	2.517780e-52
MsaG001296	MsaG023689	0.813355	4.600112e-51	8.532238e-49
MsaG001296	MsaG023692	0.810342	2.067780e-50	3.560885e-48
MsaG001296	MsaG023929	0.810562	1.854758e-50	3.211079e-48
MsaG001296	MsaG026867	0.847584	1.991167e-59	9.943528e-57
MsaG001296	MsaG027260	0.813674	3.915436e-51	7.320893e-49
MsaG001296	MsaG027469	0.825408	8.462418e-54	2.152660e-51
MsaG001296	MsaG027743	0.807330	9.050457e-50	1.449353e-47
MsaG001296	MsaG027863	0.843958	1.901203e-58	8.417746e-56
MsaG001296	MsaG028254	0.821897	5.564444e-53	1.286874e-50
MsaG001296	MsaG028292	0.808982	4.041109e-50	6.733677e-48
MsaG001296	MsaG028516	0.829429	9.283568e-55	2.643133e-52
MsaG001296	MsaG028664	0.815064	1.936870e-51	3.750143e-49
MsaG001296	MsaG028754	0.842784	3.898432e-58	1.662403e-55
MsaG001296	MsaG028883	0.805126	2.621769e-49	3.986491e-47
MsaG001296	MsaG029075	0.803610	5.407986e-49	7.938668e-47
MsaG001296	MsaG030605	0.803343	6.139259e-49	8.956769e-47
MsaG001296	MsaG030781	0.832270	1.880977e-55	5.812661e-53
MsaG001296	MsaG030996	0.807414	8.687175e-50	1.393978e-47
MsaG001296	MsaG033221	0.806642	1.263568e-49	1.990929e-47
MsaG001296	MsaG033975	0.841221	1.004540e-57	4.075234e-55
MsaG001296	MsaG034016	0.829217	1.044602e-54	2.955804e-52
MsaG001296	MsaG034151	0.815936	1.241169e-51	2.456897e-49
MsaG001296	MsaG034778	0.824288	1.549552e-53	3.822934e-51
MsaG001296	MsaG034839	0.804143	4.196474e-49	6.236940e-47
MsaG001296	MsaG035267	0.806877	1.127766e-49	1.786746e-47
MsaG001296	MsaG039682	0.836883	1.319763e-56	4.677895e-54
MsaG001296	MsaG040014	0.800479	2.364138e-48	3.231261e-46
MsaG001296	MsaG040052	0.814563	2.497836e-51	4.775499e-49
MsaG001296	MsaG040474	0.803265	6.370538e-49	9.277510e-47
MsaG001296	MsaG040566	0.802616	8.662512e-49	1.242858e-46
MsaG001296	MsaG041141	0.820460	1.188772e-52	2.646622e-50
MsaG001296	MsaG041224	0.803951	4.597759e-49	6.803051e-47
MsaG001296	MsaG042071	0.804416	3.683193e-49	5.508814e-47
MsaG001296	MsaG042087	0.811018	1.479406e-50	2.589914e-48
MsaG001296	MsaG042684	0.800944	1.902308e-48	2.627386e-46
MsaG001296	MsaG042674	0.814911	2.093878e-51	4.038507e-49
MsaG001296	MsaG043815	0.838356	5.552009e-57	2.058669e-54
MsaG001296	MsaG044048	0.805148	2.594604e-49	3.947179e-47
MsaG001296	MsaG044049	0.807395	8.768452e-50	1.406364e-47
MsaG001296	MsaG044617	0.803936	4.631452e-49	6.850384e-47
MsaG001296	MsaG044623	0.808021	6.465031e-50	1.052653e-47
MsaG001296	MsaG044938	0.801303	1.607746e-48	2.238640e-46
MsaG001296	MsaG045060	0.811359	1.248732e-50	2.204453e-48
MsaG001296	MsaG045061	0.832837	1.362727e-55	4.281095e-53
MsaG001296	MsaG045062	0.806032	1.696113e-49	2.634100e-47
MsaG001296	MsaG045145	0.825069	1.016635e-53	2.562253e-51
MsaG001296	MsaG045290	0.811355	1.251115e-50	2.208448e-48
MsaG001296	MsaG045535	0.829070	1.133455e-54	3.194098e-52
MsaG001296	MsaG045672	0.800637	2.195662e-48	3.011783e-46
MsaG001296	MsaG045952	0.800321	2.545729e-48	3.466909e-46
MsaG001296	MsaG046113	0.807929	6.761589e-50	1.098520e-47
MsaG001296	MsaG046510	0.820056	1.469506e-52	3.236853e-50
MsaG001296	MsaG046701	0.801960	1.180818e-48	1.668901e-46
MsaG001296	MsaG046932	0.810302	2.109079e-50	3.628346e-48
MsaG001296	MsaG046944	0.823692	2.135495e-53	5.184046e-51
MsaG001296	MsaG047030	0.808793	4.433581e-50	7.354019e-48
MsaG001296	MsaG047139	0.815387	1.642964e-51	3.207249e-49
MsaG001296	MsaG001530	0.814607	2.443409e-51	4.676511e-49
MsaG001296	MsaG002774	0.807453	8.526845e-50	1.369498e-47
MsaG001296	MsaG001894	0.804833	3.018131e-49	4.557983e-47
MsaG001296	MsaG002369	0.800904	1.937903e-48	2.674133e-46
MsaG001296	MsaG003779	0.803693	5.198619e-49	7.646167e-47
MsaG001296	MsaG000843	0.824499	1.383138e-53	3.432056e-51
MsaG001296	MsaG008672	0.807235	9.478421e-50	1.514419e-47
MsaG001296	MsaG008139	0.811873	9.668201e-51	1.728444e-48
MsaG001296	MsaG013545	0.801799	1.273756e-48	1.793701e-46
MsaG001296	MsaG011821	0.802405	9.569465e-49	1.366392e-46
MsaG001296	MsaG018000	0.831107	3.628087e-55	1.083835e-52
MsaG001296	MsaG026455	0.828056	1.987322e-54	5.443032e-52
MsaG001296	MsaG026065	0.800217	2.671597e-48	3.629803e-46
MsaG001296	MsaG026813	0.820680	1.058976e-52	2.371192e-50
MsaG001296	MsaG033056	0.819996	1.516512e-52	3.335079e-50
MsaG001296	MsaG033077	0.804765	3.117547e-49	4.700655e-47
MsaG001296	MsaG030575	0.801707	1.330070e-48	1.869048e-46
MsaG001296	MsaG031607	0.802450	9.369557e-49	1.339201e-46
MsaG001296	MsaG036797	0.828484	1.568823e-54	4.348965e-52
MsaG001296	MsaG036198	0.804221	4.043364e-49	6.020322e-47
MsaG001296	MsaG035293	0.805918	1.791645e-49	2.775029e-47
MsaG001296	MsaG034924	0.800129	2.783653e-48	3.774539e-46
MsaG001296	MsaG037381	0.807863	6.984090e-50	1.132850e-47
MsaG001296	MsaG036432	0.803312	6.229201e-49	9.081633e-47
MsaG001296	MsaG036880	0.819672	1.796770e-52	3.917412e-50
MsaG001296	MsaG036535	0.836293	1.862623e-56	6.486055e-54
MsaG001296	MsaG038171	0.800690	2.142559e-48	2.942456e-46
MsaG001296	MsaG045038	0.832197	1.960268e-55	6.044910e-53
MsaG001296	MsaG040992	0.803988	4.517328e-49	6.689693e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001296	MtrunA17_Chr8g0392151	37.255	153	50	2	3	109	88	240	1.26e-23	91.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 20 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGACTCAGCCTCTGAATTT+TGG	0.202823	1:-18096006	None:intergenic
ATGTATAAGTTGGGTGTTTA+TGG	0.217859	1:+18096266	MsaT001296.1:intron
TGTTGTTACCTTGCATTTGA+TGG	0.328798	1:-18095290	None:intergenic
CCACTCATATCAAAGCTAAA+TGG	0.332015	1:-18096290	None:intergenic
TGTCTTTGCTACTGCTAGTC+GGG	0.379634	1:-18095188	None:intergenic
ACCCTTTCAACAGATTCATT+TGG	0.404698	1:-18096046	None:intergenic
TAGATCACAATTGAGGAGCT+TGG	0.458055	1:+18095965	MsaT001296.1:intron
ATGTCTTTGCTACTGCTAGT+CGG	0.459833	1:-18095189	None:intergenic
AAACTAGTGATAGATCTCAT+AGG	0.499860	1:-18096100	None:intergenic
AACCAAATGAATCTGTTGAA+AGG	0.544922	1:+18096044	MsaT001296.1:CDS
ACCAAATGAATCTGTTGAAA+GGG	0.545715	1:+18096045	MsaT001296.1:CDS
CCATTTAGCTTTGATATGAG+TGG	0.563263	1:+18096290	MsaT001296.1:CDS
GTATTGTTAGATCACAATTG+AGG	0.590386	1:+18095958	MsaT001296.1:intron
ACATCTCAAAAGCAAGCTGG+TGG	0.603751	1:+18095214	MsaT001296.1:CDS
TCAACATCTCAAAAGCAAGC+TGG	0.604147	1:+18095211	MsaT001296.1:CDS
GTCTTTGCTACTGCTAGTCG+GGG	0.609471	1:-18095187	None:intergenic
ATTCTGTTCCATCAAATGCA+AGG	0.622156	1:+18095282	MsaT001296.1:CDS
TGAATCTCAGAAAACGTCCA+AGG	0.636921	1:+18096068	MsaT001296.1:CDS
AAATGATCACCAAAATTCAG+AGG	0.644619	1:+18095997	MsaT001296.1:CDS
GGTGGAATTTGTGAAGAATG+TGG	0.715683	1:+18095232	MsaT001296.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	18095136	18096331	18095136	ID=MsaG001296
Chr1	mRNA	18095136	18096331	18095136	ID=MsaT001296.1;Parent=MsaG001296
Chr1	exon	18095136	18095303	18095136	ID=MsaT001296.1.exon1;Parent=MsaT001296.1
Chr1	CDS	18095136	18095303	18095136	ID=cds.MsaT001296.1;Parent=MsaT001296.1
Chr1	exon	18095968	18096123	18095968	ID=MsaT001296.1.exon2;Parent=MsaT001296.1
Chr1	CDS	18095968	18096123	18095968	ID=cds.MsaT001296.1;Parent=MsaT001296.1
Chr1	exon	18096275	18096331	18096275	ID=MsaT001296.1.exon3;Parent=MsaT001296.1
Chr1	CDS	18096275	18096331	18096275	ID=cds.MsaT001296.1;Parent=MsaT001296.1

Gene Sequence

>MsaT001296.1

ATGATTTTGCAGACTTATATATCAAACAATGACAAGATTGTGCTTATCAAACCCCGACTAGCAGTAGCAAAGACATCAACATCTCAAAAGCAAGCTGGTGGAATTTGTGAAGAATGTGGCAAACAGTTACAAGATAAGCGTAACAGATTCTGTTCCATCAAATGCAAGATCACAATTGAGGAGCTTGGAGTCAACCAAAATGATCACCAAAATTCAGAGGCTGAGTCATCTATCTCTACTGTTGAACCAAATGAATCTGTTGAAAGGGTGAATCTCAGAAAACGTCCAAGGAAAAGCACTCCTATGAGATCTATCACTAGTTTTTTGGGTGTTTATGGTCCATTTAGCTTTGATATGAGTGGTGCAAAAATGGTCAAATGA

Protein sequence

>MsaT001296.1

MILQTYISNNDKIVLIKPRLAVAKTSTSQKQAGGICEECGKQLQDKRNRFCSIKCKITIEELGVNQNDHQNSEAESSISTVEPNESVERVNLRKRPRKSTPMRSITSFLGVYGPFSFDMSGAKMVK*