Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001370 | XP_013466718.1 | 98.588 | 425 | 6 | 0 | 1 | 425 | 1 | 425 | 0.0 | 877 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001370 | sp|Q8L3W1|VRN1_ARATH | 51.523 | 394 | 134 | 7 | 3 | 395 | 2 | 339 | 3.59e-129 | 379 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001370 | tr|A0A072VFE7|A0A072VFE7_MEDTR | 98.588 | 425 | 6 | 0 | 1 | 425 | 1 | 425 | 0.0 | 877 |
Gene ID | Type | Classification |
---|---|---|
MsaG001370 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG001368 | MsaG001370 | 0.950323 | 6.729642e-108 | 1.562437e-102 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001370 | MtrunA17_Chr1g0162441 | 98.588 | 425 | 6 | 0 | 1 | 425 | 1 | 425 | 0.0 | 877 |
MsaG001370 | MtrunA17_Chr4g0033961 | 63.551 | 428 | 143 | 6 | 3 | 425 | 2 | 421 | 0.0 | 547 |
MsaG001370 | MtrunA17_Chr1g0162411 | 52.143 | 420 | 112 | 12 | 1 | 360 | 1 | 391 | 2.88e-120 | 358 |
MsaG001370 | MtrunA17_Chr1g0162421 | 89.655 | 58 | 6 | 0 | 21 | 78 | 7 | 64 | 4.09e-31 | 114 |
MsaG001370 | MtrunA17_Chr1g0162431 | 83.333 | 54 | 9 | 0 | 345 | 398 | 5 | 58 | 6.43e-25 | 97.4 |
MsaG001370 | MtrunA17_Chr3g0077461 | 44.444 | 99 | 55 | 0 | 7 | 105 | 237 | 335 | 8.58e-24 | 103 |
MsaG001370 | MtrunA17_Chr3g0077461 | 44.681 | 94 | 51 | 1 | 22 | 115 | 22 | 114 | 1.93e-19 | 90.5 |
MsaG001370 | MtrunA17_Chr5g0429931 | 50.000 | 84 | 42 | 0 | 22 | 105 | 10 | 93 | 8.68e-24 | 99.8 |
MsaG001370 | MtrunA17_Chr5g0429931 | 31.461 | 178 | 92 | 6 | 221 | 392 | 89 | 242 | 8.46e-13 | 68.2 |
MsaG001370 | MtrunA17_Chr4g0009491 | 45.455 | 99 | 54 | 0 | 7 | 105 | 225 | 323 | 9.49e-24 | 102 |
MsaG001370 | MtrunA17_Chr4g0009491 | 41.176 | 85 | 50 | 0 | 21 | 105 | 11 | 95 | 4.20e-17 | 83.2 |
MsaG001370 | MtrunA17_Chr3g0077411 | 44.037 | 109 | 60 | 1 | 7 | 115 | 25 | 132 | 1.41e-23 | 103 |
MsaG001370 | MtrunA17_Chr3g0077411 | 46.000 | 100 | 53 | 1 | 7 | 105 | 262 | 361 | 1.83e-23 | 102 |
MsaG001370 | MtrunA17_Chr3g0077451 | 42.157 | 102 | 56 | 1 | 21 | 119 | 10 | 111 | 2.27e-23 | 98.2 |
MsaG001370 | MtrunA17_Chr3g0077451 | 35.075 | 134 | 71 | 5 | 271 | 395 | 111 | 237 | 1.96e-12 | 67.0 |
MsaG001370 | MtrunA17_Chr7g0233571 | 42.857 | 105 | 60 | 0 | 3 | 107 | 6 | 110 | 3.37e-22 | 94.7 |
MsaG001370 | MtrunA17_Chr3g0103151 | 36.170 | 141 | 80 | 2 | 7 | 147 | 12 | 142 | 3.44e-22 | 92.8 |
MsaG001370 | MtrunA17_Chr3g0077381 | 44.444 | 99 | 55 | 0 | 7 | 105 | 247 | 345 | 4.98e-22 | 97.8 |
MsaG001370 | MtrunA17_Chr3g0077381 | 44.706 | 85 | 47 | 0 | 21 | 105 | 34 | 118 | 1.16e-19 | 90.9 |
MsaG001370 | MtrunA17_Chr7g0233561 | 44.444 | 99 | 55 | 0 | 7 | 105 | 18 | 116 | 1.33e-21 | 95.1 |
MsaG001370 | MtrunA17_Chr7g0233561 | 26.471 | 204 | 139 | 3 | 200 | 392 | 109 | 312 | 4.99e-13 | 69.7 |
MsaG001370 | MtrunA17_Chr3g0103181 | 42.424 | 99 | 55 | 1 | 7 | 105 | 12 | 108 | 3.67e-21 | 92.8 |
MsaG001370 | MtrunA17_Chr3g0077361 | 38.793 | 116 | 65 | 2 | 7 | 116 | 40 | 155 | 5.75e-21 | 95.1 |
MsaG001370 | MtrunA17_Chr3g0077361 | 43.662 | 71 | 40 | 0 | 7 | 77 | 289 | 359 | 1.68e-15 | 78.6 |
MsaG001370 | MtrunA17_Chr3g0077361 | 34.615 | 130 | 74 | 4 | 268 | 393 | 380 | 502 | 5.18e-15 | 77.0 |
MsaG001370 | MtrunA17_Chr3g0103191 | 41.176 | 102 | 58 | 1 | 7 | 108 | 12 | 111 | 1.04e-20 | 90.9 |
MsaG001370 | MtrunA17_Chr5g0419201 | 39.604 | 101 | 61 | 0 | 7 | 107 | 16 | 116 | 2.26e-20 | 88.6 |
MsaG001370 | MtrunA17_Chr3g0131891 | 41.414 | 99 | 58 | 0 | 7 | 105 | 19 | 117 | 6.69e-20 | 90.5 |
MsaG001370 | MtrunA17_Chr3g0131891 | 28.571 | 203 | 124 | 5 | 209 | 392 | 103 | 303 | 4.49e-18 | 85.1 |
MsaG001370 | MtrunA17_Chr7g0233541 | 44.578 | 83 | 46 | 0 | 23 | 105 | 2 | 84 | 1.86e-19 | 88.6 |
MsaG001370 | MtrunA17_Chr8g0390841 | 41.000 | 100 | 59 | 0 | 7 | 106 | 39 | 138 | 3.03e-19 | 90.1 |
MsaG001370 | MtrunA17_Chr8g0390841 | 31.210 | 157 | 97 | 5 | 243 | 398 | 191 | 337 | 6.98e-17 | 82.8 |
MsaG001370 | MtrunA17_Chr1g0163071 | 36.585 | 123 | 65 | 2 | 23 | 142 | 2 | 114 | 1.18e-18 | 86.3 |
MsaG001370 | MtrunA17_Chr1g0163071 | 35.455 | 110 | 66 | 2 | 287 | 396 | 187 | 291 | 1.06e-16 | 80.5 |
MsaG001370 | MtrunA17_Chr7g0233531 | 41.837 | 98 | 54 | 1 | 23 | 120 | 2 | 96 | 2.38e-18 | 84.7 |
MsaG001370 | MtrunA17_Chr7g0233531 | 30.894 | 123 | 79 | 2 | 276 | 392 | 141 | 263 | 2.28e-11 | 64.3 |
MsaG001370 | MtrunA17_Chr1g0154111 | 23.592 | 373 | 228 | 8 | 19 | 388 | 38 | 356 | 3.49e-18 | 87.0 |
MsaG001370 | MtrunA17_Chr1g0154041 | 22.475 | 396 | 249 | 10 | 4 | 396 | 13 | 353 | 6.00e-18 | 86.3 |
MsaG001370 | MtrunA17_Chr7g0233521 | 42.169 | 83 | 48 | 0 | 23 | 105 | 2 | 84 | 1.29e-17 | 82.8 |
MsaG001370 | MtrunA17_Chr3g0103171 | 38.710 | 93 | 57 | 0 | 22 | 114 | 5 | 97 | 1.72e-17 | 82.0 |
MsaG001370 | MtrunA17_Chr1g0208771 | 35.659 | 129 | 73 | 5 | 274 | 400 | 178 | 298 | 1.79e-15 | 78.2 |
MsaG001370 | MtrunA17_Chr1g0208771 | 36.364 | 121 | 62 | 3 | 22 | 142 | 12 | 117 | 3.28e-14 | 74.3 |
MsaG001370 | MtrunA17_Chr3g0077421 | 37.037 | 135 | 70 | 5 | 267 | 393 | 70 | 197 | 3.58e-15 | 73.9 |
MsaG001370 | MtrunA17_Chr3g0077421 | 41.667 | 72 | 41 | 1 | 51 | 122 | 1 | 71 | 9.12e-11 | 61.2 |
MsaG001370 | MtrunA17_Chr3g0077441 | 37.037 | 135 | 70 | 5 | 267 | 393 | 70 | 197 | 3.58e-15 | 73.9 |
MsaG001370 | MtrunA17_Chr3g0077441 | 41.667 | 72 | 41 | 1 | 51 | 122 | 1 | 71 | 9.12e-11 | 61.2 |
MsaG001370 | MtrunA17_Chr3g0077431 | 35.075 | 134 | 71 | 5 | 271 | 395 | 72 | 198 | 4.59e-13 | 67.8 |
MsaG001370 | MtrunA17_Chr1g0163191 | 34.234 | 111 | 66 | 3 | 5 | 115 | 7 | 110 | 1.10e-12 | 65.9 |
MsaG001370 | MtrunA17_Chr1g0154161 | 39.560 | 91 | 55 | 0 | 7 | 97 | 30 | 120 | 1.98e-12 | 68.2 |
MsaG001370 | MtrunA17_Chr1g0163091 | 28.788 | 132 | 84 | 3 | 269 | 398 | 2 | 125 | 6.78e-12 | 63.5 |
MsaG001370 | MtrunA17_Chr1g0154101 | 37.931 | 87 | 53 | 1 | 11 | 97 | 187 | 272 | 1.62e-11 | 66.6 |
MsaG001370 | MtrunA17_Chr1g0154101 | 41.772 | 79 | 46 | 0 | 19 | 97 | 37 | 115 | 5.79e-11 | 64.7 |
MsaG001370 | MtrunA17_Chr1g0154211 | 38.462 | 91 | 55 | 1 | 7 | 97 | 23 | 112 | 1.66e-11 | 65.9 |
MsaG001370 | MtrunA17_Chr1g0154131 | 39.560 | 91 | 54 | 1 | 7 | 97 | 26 | 115 | 1.68e-11 | 65.9 |
MsaG001370 | MtrunA17_Chr1g0154131 | 40.506 | 79 | 47 | 0 | 19 | 97 | 194 | 272 | 4.00e-11 | 64.7 |
MsaG001370 | MtrunA17_Chr1g0154171 | 41.772 | 79 | 46 | 0 | 19 | 97 | 34 | 112 | 4.71e-11 | 63.9 |
MsaG001370 | MtrunA17_Chr1g0163181 | 33.663 | 101 | 61 | 2 | 5 | 105 | 7 | 101 | 6.10e-11 | 63.9 |
MsaG001370 | MtrunA17_Chr6g0467351 | 34.000 | 100 | 65 | 1 | 7 | 105 | 15 | 114 | 7.40e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001370 | AT3G18990.1 | 51.523 | 394 | 134 | 7 | 3 | 395 | 2 | 339 | 3.65e-130 | 379 |
MsaG001370 | AT3G18990.2 | 51.269 | 394 | 135 | 7 | 3 | 395 | 2 | 339 | 8.01e-129 | 377 |
MsaG001370 | AT1G49480.3 | 71.875 | 160 | 43 | 2 | 237 | 395 | 66 | 224 | 7.47e-78 | 241 |
MsaG001370 | AT1G49480.1 | 71.875 | 160 | 43 | 2 | 237 | 395 | 66 | 224 | 7.47e-78 | 241 |
MsaG001370 | AT1G49480.2 | 71.875 | 160 | 43 | 2 | 237 | 395 | 66 | 224 | 7.47e-78 | 241 |
MsaG001370 | AT4G01580.1 | 42.718 | 103 | 59 | 0 | 3 | 105 | 26 | 128 | 4.45e-24 | 99.4 |
MsaG001370 | AT3G18960.2 | 40.777 | 103 | 61 | 0 | 3 | 105 | 26 | 128 | 1.07e-22 | 95.5 |
MsaG001370 | AT3G18960.1 | 40.777 | 103 | 61 | 0 | 3 | 105 | 26 | 128 | 1.16e-22 | 95.9 |
MsaG001370 | AT1G49475.1 | 35.849 | 106 | 64 | 2 | 3 | 105 | 27 | 131 | 7.41e-17 | 79.0 |
MsaG001370 | AT3G18960.3 | 41.667 | 84 | 49 | 0 | 22 | 105 | 8 | 91 | 1.17e-16 | 77.8 |
Find 103 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTACATTAGAGAACAATTT+AGG | 0.133108 | 1:+19085555 | MsaT001370.1:CDS |
AAGAATTTGAACGGTGTTTC+AGG | 0.187714 | 1:+19085438 | MsaT001370.1:CDS |
AAAAGGTTGACAACCGAATT+TGG | 0.209979 | 1:+19084271 | MsaT001370.1:CDS |
TGTTCCAGATCTGGATTATT+AGG | 0.232060 | 1:+19088063 | MsaT001370.1:intron |
TCATTGCAGAATTTGTTTAA+TGG | 0.251640 | 1:+19084618 | MsaT001370.1:CDS |
CTAAACTCAACCACGTTAAC+TGG | 0.274983 | 1:+19084646 | MsaT001370.1:CDS |
CATTGCAGAATTTGTTTAAT+GGG | 0.276665 | 1:+19084619 | MsaT001370.1:CDS |
TTATTAACCCCTTCCTCATT+AGG | 0.282526 | 1:-19084786 | None:intergenic |
TGATGGCACTGTCTGGCGTC+TGG | 0.293334 | 1:+19084242 | MsaT001370.1:CDS |
TATCGACTCCTTTGAATTCC+TGG | 0.294296 | 1:+19084500 | MsaT001370.1:CDS |
TATTTCCTAAGAAAATTATC+TGG | 0.317191 | 1:-19084180 | None:intergenic |
TTACATTAGAGAACAATTTA+GGG | 0.336001 | 1:+19085556 | MsaT001370.1:CDS |
CTGGCGTCTGGGATTGAAAA+AGG | 0.342376 | 1:+19084254 | MsaT001370.1:CDS |
ATCCTTGGCTTAACTTTGCT+CGG | 0.390374 | 1:-19085524 | None:intergenic |
CGTGTAAAAGAGGACGAGTC+AGG | 0.395227 | 1:+19085645 | MsaT001370.1:CDS |
TTACCAATTGTCTAGTTTGA+AGG | 0.397207 | 1:-19082425 | None:intergenic |
ATCCCTTCAAACTAGACAAT+TGG | 0.398966 | 1:+19082422 | MsaT001370.1:CDS |
TTGCTCGGCCTCCTTTATAT+AGG | 0.399413 | 1:-19085509 | None:intergenic |
TTTATATAGAGGATGTATAA+TGG | 0.403472 | 1:+19085301 | MsaT001370.1:CDS |
CGGCCCTCTTATTTATATAG+AGG | 0.407946 | 1:+19085290 | MsaT001370.1:CDS |
TTTCTAGTATTCACTTATGA+AGG | 0.411457 | 1:+19084348 | MsaT001370.1:CDS |
AGCCATCAACAAACCAAATT+CGG | 0.424387 | 1:-19084284 | None:intergenic |
ATTCAGTCAACCAGAGATAT+AGG | 0.424869 | 1:+19084705 | MsaT001370.1:CDS |
AACCGAATTTGGTTTGTTGA+TGG | 0.437717 | 1:+19084282 | MsaT001370.1:CDS |
CTGTTCCTGATGGCACTGTC+TGG | 0.439890 | 1:+19084235 | MsaT001370.1:CDS |
CTTGCAATGCACCAGGAGTA+AGG | 0.441488 | 1:-19084539 | None:intergenic |
TATATCTCTGGTTGACTGAA+TGG | 0.443124 | 1:-19084703 | None:intergenic |
TTAAACAAATTCTGCAATGA+TGG | 0.444180 | 1:-19084615 | None:intergenic |
CACTTTGTTTCGTGTAAAAG+AGG | 0.446820 | 1:+19085635 | MsaT001370.1:CDS |
ACATCCTCTATATAAATAAG+AGG | 0.453294 | 1:-19085294 | None:intergenic |
TTTGTTCAACGTTACTCCAT+TGG | 0.453832 | 1:+19084315 | MsaT001370.1:CDS |
CAACGTTACTCCATTGGCAT+TGG | 0.459331 | 1:+19084321 | MsaT001370.1:CDS |
ATGTAAATTCATACCATCCT+TGG | 0.460863 | 1:-19085539 | None:intergenic |
GATGGCACTGTCTGGCGTCT+GGG | 0.465269 | 1:+19084243 | MsaT001370.1:CDS |
TGTCTAGTTTGAAGGGATGA+AGG | 0.472503 | 1:-19082417 | None:intergenic |
CCTTTATATAGGCAGCGAAC+AGG | 0.472865 | 1:-19085498 | None:intergenic |
ATTAAGCTTCAGATCTCTGA+TGG | 0.476714 | 1:+19085465 | MsaT001370.1:CDS |
CACGTTAACTGGGGAGATAT+CGG | 0.483067 | 1:+19084657 | MsaT001370.1:CDS |
GACTTGCAGCACTACCTCTC+TGG | 0.488129 | 1:-19085613 | None:intergenic |
GCACCAGGAGTAAGGTTTGA+AGG | 0.495370 | 1:-19084531 | None:intergenic |
GGGTTGCAATAGTCGAAAGC+TGG | 0.499258 | 1:-19084209 | None:intergenic |
CCCTTCAGTACGGCTTCTCA+TGG | 0.501141 | 1:-19084433 | None:intergenic |
TAACAGCAGAAGAAAGAGAA+AGG | 0.504497 | 1:+19085210 | MsaT001370.1:CDS |
GAACTGAACACCTATATCTC+TGG | 0.504709 | 1:-19084715 | None:intergenic |
GAATTTGGTTTGTTGATGGC+TGG | 0.507060 | 1:+19084286 | MsaT001370.1:CDS |
ACTCTACAGAATGGATTGGT+TGG | 0.509007 | 1:-19085260 | None:intergenic |
TAAACTCAACCACGTTAACT+GGG | 0.517161 | 1:+19084647 | MsaT001370.1:CDS |
TACCAATTGTCTAGTTTGAA+GGG | 0.519590 | 1:-19082424 | None:intergenic |
CCTGTTCGCTGCCTATATAA+AGG | 0.526982 | 1:+19085498 | MsaT001370.1:CDS |
TCACCTTCAAACCTTACTCC+TGG | 0.530653 | 1:+19084528 | MsaT001370.1:CDS |
AGACGCCAGACAGTGCCATC+AGG | 0.531089 | 1:-19084240 | None:intergenic |
CATAGCAAGGCCCTTCAGTA+CGG | 0.538460 | 1:-19084443 | None:intergenic |
AACAGCAGAAGAAAGAGAAA+GGG | 0.540440 | 1:+19085211 | MsaT001370.1:CDS |
GTCTAGTTTGAAGGGATGAA+GGG | 0.543517 | 1:-19082416 | None:intergenic |
GGTTTGAAGGTGATGAATCC+AGG | 0.544026 | 1:-19084518 | None:intergenic |
GGATGATAATTTGCATAGCA+AGG | 0.545527 | 1:-19084456 | None:intergenic |
AGAATGAGCTTGTGAAAAGA+AGG | 0.547922 | 1:-19082393 | None:intergenic |
ATTGCAGAATTTGTTTAATG+GGG | 0.548631 | 1:+19084620 | MsaT001370.1:CDS |
TCCTGGTGCATTGCAAGACA+AGG | 0.548892 | 1:+19084545 | MsaT001370.1:CDS |
ACCTTGTCTTGCAATGCACC+AGG | 0.549286 | 1:-19084546 | None:intergenic |
TTGTGTAACTGTAGGTGCAC+TGG | 0.551946 | 1:+19085112 | MsaT001370.1:intron |
GCCATGAGAAGCCGTACTGA+AGG | 0.554864 | 1:+19084432 | MsaT001370.1:CDS |
CTGACACGGTGCTGCAAGTG+AGG | 0.554904 | 1:-19085726 | None:intergenic |
TTGCGCTATCCTAATGAGGA+AGG | 0.562431 | 1:+19084777 | MsaT001370.1:CDS |
TATATAAATAAGAGGGCCGC+AGG | 0.564081 | 1:-19085286 | None:intergenic |
TTAGAGAACAATTTAGGGGA+AGG | 0.568521 | 1:+19085561 | MsaT001370.1:CDS |
GGCCGAGCAAAGTTAAGCCA+AGG | 0.570951 | 1:+19085522 | MsaT001370.1:CDS |
CATCCTCTATATAAATAAGA+GGG | 0.573160 | 1:-19085293 | None:intergenic |
TTTGGCTTGGTTGTGAAGAA+GGG | 0.575829 | 1:-19085677 | None:intergenic |
TGCAGAATTTGTTTAATGGG+GGG | 0.577486 | 1:+19084622 | MsaT001370.1:CDS |
TTGCAGAATTTGTTTAATGG+GGG | 0.578544 | 1:+19084621 | MsaT001370.1:CDS |
TGCGCTATCCTAATGAGGAA+GGG | 0.580496 | 1:+19084778 | MsaT001370.1:CDS |
GAAATTGCGCTATCCTAATG+AGG | 0.581484 | 1:+19084773 | MsaT001370.1:CDS |
TTTGCAGAAAAGAATTTGAA+CGG | 0.582980 | 1:+19085429 | MsaT001370.1:CDS |
GGTTGCAATAGTCGAAAGCT+GGG | 0.584695 | 1:-19084208 | None:intergenic |
TGATGAATCCAGGAATTCAA+AGG | 0.585718 | 1:-19084508 | None:intergenic |
GCGCTATCCTAATGAGGAAG+GGG | 0.586754 | 1:+19084779 | MsaT001370.1:CDS |
GACAACTCTACAGAATGGAT+TGG | 0.593488 | 1:-19085264 | None:intergenic |
CGATATCTCCCCAGTTAACG+TGG | 0.595115 | 1:-19084656 | None:intergenic |
TAGAAAGTATCCAATGCCAA+TGG | 0.595339 | 1:-19084331 | None:intergenic |
CACTGCTGAAAATGATGAGG+AGG | 0.595680 | 1:+19085139 | MsaT001370.1:CDS |
CGCAGGACAACTCTACAGAA+TGG | 0.599765 | 1:-19085269 | None:intergenic |
GCAACCCTCACTGTTCCTGA+TGG | 0.602871 | 1:+19084225 | MsaT001370.1:CDS |
TTAAGCTTCAGATCTCTGAT+GGG | 0.604595 | 1:+19085466 | MsaT001370.1:CDS |
AGAAAACTTCAAGAAAGAAG+CGG | 0.610439 | 1:+19084820 | MsaT001370.1:CDS |
GCGCAATTTCAATCCTTCAG+TGG | 0.610517 | 1:-19084760 | None:intergenic |
GATGGAGTATGATTCTTCGC+TGG | 0.611475 | 1:-19084597 | None:intergenic |
CCATGAGAAGCCGTACTGAA+GGG | 0.612450 | 1:+19084433 | MsaT001370.1:CDS |
AGATCTCTGATGGGAGACAG+TGG | 0.629937 | 1:+19085475 | MsaT001370.1:CDS |
TACATTAGAGAACAATTTAG+GGG | 0.630150 | 1:+19085557 | MsaT001370.1:CDS |
GTGTAAAAGAGGACGAGTCA+GGG | 0.630504 | 1:+19085646 | MsaT001370.1:CDS |
GAGCAAAGTTAAGCCAAGGA+TGG | 0.643193 | 1:+19085526 | MsaT001370.1:CDS |
TGACACGGTGCTGCAAGTGA+GGG | 0.655075 | 1:-19085725 | None:intergenic |
GTTCGCTGCCTATATAAAGG+AGG | 0.657822 | 1:+19085501 | MsaT001370.1:CDS |
AGTGCCATCAGGAACAGTGA+GGG | 0.674235 | 1:-19084229 | None:intergenic |
TGAGCTGCTTAGAACCAGAG+AGG | 0.682743 | 1:+19085599 | MsaT001370.1:CDS |
AGCCACTGCTGAAAATGATG+AGG | 0.685162 | 1:+19085136 | MsaT001370.1:CDS |
CAGTGCCATCAGGAACAGTG+AGG | 0.694859 | 1:-19084230 | None:intergenic |
TTGTGAAAAGAAGGACGAGG+AGG | 0.697547 | 1:-19082384 | None:intergenic |
AGCTTGTGAAAAGAAGGACG+AGG | 0.710821 | 1:-19082387 | None:intergenic |
AAACTCAACCACGTTAACTG+GGG | 0.714026 | 1:+19084648 | MsaT001370.1:CDS |
CATTCTGTAGAGTTGTCCTG+CGG | 0.717327 | 1:+19085270 | MsaT001370.1:CDS |
GTTAACTGGGGAGATATCGG+TGG | 0.726802 | 1:+19084660 | MsaT001370.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 19082381 | 19088115 | 19082381 | ID=MsaG001370 |
Chr1 | mRNA | 19082381 | 19088115 | 19082381 | ID=MsaT001370.1;Parent=MsaG001370 |
Chr1 | exon | 19082381 | 19082443 | 19082381 | ID=MsaT001370.1.exon1;Parent=MsaT001370.1 |
Chr1 | CDS | 19082381 | 19082443 | 19082381 | ID=cds.MsaT001370.1;Parent=MsaT001370.1 |
Chr1 | exon | 19084174 | 19084855 | 19084174 | ID=MsaT001370.1.exon2;Parent=MsaT001370.1 |
Chr1 | CDS | 19084174 | 19084855 | 19084174 | ID=cds.MsaT001370.1;Parent=MsaT001370.1 |
Chr1 | exon | 19085126 | 19085322 | 19085126 | ID=MsaT001370.1.exon3;Parent=MsaT001370.1 |
Chr1 | CDS | 19085126 | 19085322 | 19085126 | ID=cds.MsaT001370.1;Parent=MsaT001370.1 |
Chr1 | exon | 19085414 | 19085743 | 19085414 | ID=MsaT001370.1.exon4;Parent=MsaT001370.1 |
Chr1 | CDS | 19085414 | 19085743 | 19085414 | ID=cds.MsaT001370.1;Parent=MsaT001370.1 |
Chr1 | exon | 19088071 | 19088115 | 19088071 | ID=MsaT001370.1.exon5;Parent=MsaT001370.1 |
Chr1 | CDS | 19088071 | 19088115 | 19088071 | ID=cds.MsaT001370.1;Parent=MsaT001370.1 |
Gene Sequence |
Protein sequence |