AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG001403


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001403 MtrunA17_Chr1g0162871 97.669 901 21 0 1 901 103 1003 0.0 1830
MsaG001403 MtrunA17_Chr7g0270541 33.833 600 352 13 332 900 415 1000 4.00e-94 318
MsaG001403 MtrunA17_Chr7g0270541 73.404 94 25 0 1 94 144 237 1.32e-37 152
MsaG001403 MtrunA17_Chr1g0194121 33.274 565 343 11 362 900 446 1002 8.86e-89 304
MsaG001403 MtrunA17_Chr1g0194121 75.862 87 20 1 1 87 146 231 1.91e-35 145
MsaG001403 MtrunA17_Chr2g0302791 31.379 580 339 16 364 901 463 1025 7.08e-83 288
MsaG001403 MtrunA17_Chr2g0302791 64.486 107 38 0 1 107 138 244 1.56e-38 155
MsaG001403 MtrunA17_Chr8g0386271 67.901 81 26 0 2 82 99 179 3.67e-32 129
MsaG001403 MtrunA17_Chr8g0360361 67.059 85 28 0 2 86 65 149 2.41e-31 121
MsaG001403 MtrunA17_Chr2g0282521 72.000 75 21 0 2 76 64 138 1.19e-30 117
MsaG001403 MtrunA17_Chr4g0046991 69.231 78 24 0 2 79 73 150 2.34e-30 117
MsaG001403 MtrunA17_Chr8g0334671 71.053 76 22 0 2 77 187 262 9.07e-30 121
MsaG001403 MtrunA17_Chr2g0308321 71.053 76 22 0 2 77 171 246 2.52e-29 123
MsaG001403 MtrunA17_Chr3g0132091 45.985 137 68 2 2 132 73 209 3.55e-29 120
MsaG001403 MtrunA17_Chr5g0420051 67.089 79 26 0 1 79 180 258 6.55e-29 120
MsaG001403 MtrunA17_Chr7g0231911 66.667 81 27 0 2 82 149 229 9.11e-29 117
MsaG001403 MtrunA17_Chr7g0224821 64.103 78 28 0 1 78 76 153 1.00e-28 119
MsaG001403 MtrunA17_Chr4g0061651 64.286 84 30 0 2 85 123 206 1.23e-27 117
MsaG001403 MtrunA17_Chr7g0258471 63.750 80 29 0 2 81 142 221 1.62e-27 116
MsaG001403 MtrunA17_Chr3g0122411 58.824 85 35 0 2 86 165 249 3.70e-27 115
MsaG001403 MtrunA17_Chr2g0286661 25.131 382 244 9 347 704 272 635 6.59e-25 111
MsaG001403 MtrunA17_Chr2g0286661 48.936 94 47 1 2 95 103 195 5.75e-21 99.0
MsaG001403 MtrunA17_Chr8g0377421 56.757 74 32 0 2 75 132 205 1.83e-21 96.3
MsaG001403 MtrunA17_Chr8g0377401 56.757 74 32 0 1 74 161 234 1.50e-20 92.4
MsaG001403 MtrunA17_Chr2g0317041 62.500 48 18 0 1 48 98 145 7.77e-15 72.8
MsaG001403 MtrunA17_Chr8g0377431 50.000 56 28 0 2 57 151 206 1.00e-11 65.5
MsaG001403 MtrunA17_Chr1g0175031 59.574 47 19 0 2 48 74 120 2.81e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001403 AT1G20980.1 50.896 949 386 22 1 901 119 1035 0.0 836
MsaG001403 AT1G76580.1 49.737 951 383 22 2 901 114 1020 0.0 830
MsaG001403 AT1G76580.2 48.933 609 232 17 2 560 114 693 1.34e-166 502
MsaG001403 AT1G76580.3 48.929 607 231 17 2 558 114 691 1.67e-165 499
MsaG001403 AT2G47070.2 33.993 556 315 14 364 900 229 751 1.74e-87 295
MsaG001403 AT2G47070.2 58.025 81 32 1 27 107 2 80 1.95e-20 97.4
MsaG001403 AT3G60030.1 35.536 560 308 17 363 900 398 926 6.83e-87 298
MsaG001403 AT3G60030.1 66.038 106 35 1 2 107 127 231 1.45e-36 149
MsaG001403 AT2G47070.1 33.993 556 315 14 364 900 358 880 2.21e-86 295
MsaG001403 AT2G47070.1 62.617 107 38 1 1 107 105 209 5.14e-35 144
MsaG001403 AT1G53160.3 65.116 86 30 0 1 86 53 138 6.07e-31 120
MsaG001403 AT1G53160.2 65.116 86 30 0 1 86 53 138 8.67e-31 119
MsaG001403 AT1G53160.1 65.116 86 30 0 1 86 53 138 8.67e-31 119
MsaG001403 AT2G33810.1 65.823 79 27 0 1 79 53 131 3.95e-30 116
MsaG001403 AT3G15270.1 64.286 84 30 0 1 84 62 145 4.05e-30 118
MsaG001403 AT5G50570.1 60.976 82 32 0 1 82 100 181 2.16e-29 121
MsaG001403 AT5G50570.2 60.976 82 32 0 1 82 100 181 2.16e-29 121
MsaG001403 AT5G50670.1 60.976 82 32 0 1 82 100 181 2.16e-29 121
MsaG001403 AT5G50670.2 60.976 82 32 0 1 82 100 181 2.16e-29 121
MsaG001403 AT1G69170.1 70.667 75 22 0 1 75 123 197 2.51e-29 122
MsaG001403 AT1G02065.1 71.622 74 21 0 2 75 188 261 2.81e-28 117
MsaG001403 AT5G18830.2 31.278 227 152 2 367 589 320 546 3.01e-28 122
MsaG001403 AT5G18830.2 48.810 84 43 0 2 85 138 221 1.38e-19 94.7
MsaG001403 AT5G18830.1 31.278 227 152 2 367 589 320 546 3.07e-28 122
MsaG001403 AT5G18830.1 48.810 84 43 0 2 85 138 221 1.34e-19 94.7
MsaG001403 AT5G18830.3 31.278 227 152 2 367 589 320 546 3.36e-28 122
MsaG001403 AT5G18830.3 48.810 84 43 0 2 85 138 221 1.32e-19 95.1
MsaG001403 AT1G27370.6 58.427 89 30 1 2 90 176 257 1.17e-26 112
MsaG001403 AT5G43270.3 51.786 112 47 2 2 113 169 273 1.65e-26 114
MsaG001403 AT5G43270.1 51.786 112 47 2 2 113 169 273 1.65e-26 114
MsaG001403 AT5G43270.2 51.786 112 47 2 2 113 169 273 1.65e-26 114
MsaG001403 AT1G27370.1 58.427 89 30 1 2 90 176 257 2.04e-26 113
MsaG001403 AT1G27370.5 58.427 89 30 1 2 90 176 257 2.04e-26 113
MsaG001403 AT1G27370.3 58.427 89 30 1 2 90 176 257 2.04e-26 113
MsaG001403 AT1G27370.2 58.427 89 30 1 2 90 176 257 2.04e-26 113
MsaG001403 AT1G27370.4 58.427 89 30 1 2 90 176 257 2.04e-26 113
MsaG001403 AT1G27370.7 58.427 89 30 1 2 90 176 257 2.04e-26 113
MsaG001403 AT3G57920.1 66.234 77 26 0 2 78 59 135 3.41e-26 111
MsaG001403 AT2G42200.1 62.195 82 31 0 2 83 74 155 3.99e-26 112
MsaG001403 AT1G27360.2 64.474 76 27 0 2 77 175 250 1.54e-25 110
MsaG001403 AT1G27360.1 64.474 76 27 0 2 77 175 250 1.54e-25 110
MsaG001403 AT1G27360.3 64.474 76 27 0 2 77 175 250 1.54e-25 110
MsaG001403 AT1G27360.4 64.474 76 27 0 2 77 175 250 1.54e-25 110
MsaG001403 AT1G02065.2 61.404 57 20 1 2 56 188 244 5.31e-15 76.3

Find 227 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAGCATGAACATAATTT+TGG 0.128013 1:+19604123 MsaT001403.1:CDS
ATCCCTCTTGATCTCTTTAA+AGG 0.178781 1:+19602456 MsaT001403.1:CDS
GAATCAGGTTGCTGCTAATT+TGG 0.209506 1:+19600869 MsaT001403.1:CDS
ATAACTCAGATTCTGATTTC+TGG 0.211467 1:+19603174 MsaT001403.1:CDS
ACCTGTGTTCGCAGCGTTCC+TGG 0.222112 1:-19602788 None:intergenic
GGAAGATTTCTTGTTTATTC+TGG 0.246345 1:+19603203 MsaT001403.1:CDS
CGGTGGAAATACATATTTCT+TGG 0.254936 1:-19604481 None:intergenic
AAAGCTTCTAAGGCTTTGTT+AGG 0.256564 1:+19600687 MsaT001403.1:CDS
CCTGTTGTGGAGATGAATTT+TGG 0.273941 1:+19602333 MsaT001403.1:CDS
AATGGTATTTCCACTGGATT+TGG 0.277013 1:+19602387 MsaT001403.1:CDS
GATGCATAACCAGCTTTAAA+TGG 0.312390 1:-19602528 None:intergenic
AGGTTCGCCGCCGTTGAATC+AGG 0.312918 1:+19600854 MsaT001403.1:CDS
AGGTGGGAAAACTTGAATTA+TGG 0.313613 1:+19605663 MsaT001403.1:CDS
TGTACAAGCTGCTCTTTATC+TGG 0.315396 1:-19601865 None:intergenic
TAGGCTCAGTTTCTCCCTTC+AGG 0.321487 1:+19605643 MsaT001403.1:CDS
AATACATCTCCTAGTGTTCT+AGG 0.322030 1:+19603816 MsaT001403.1:CDS
GTTTGTGAACAGGTTGAAAA+TGG 0.322272 1:+19603988 MsaT001403.1:intron
TTCAATGTCTTCTGCTGCTT+GGG 0.324534 1:+19603019 MsaT001403.1:CDS
CATGTTGGTCAAAACCCTTC+TGG 0.329211 1:+19604299 MsaT001403.1:CDS
AGCTAGCATCGAATGAATAA+AGG 0.329929 1:-19605568 None:intergenic
CTGAGTATCTGAATTCAAAC+TGG 0.331636 1:-19602574 None:intergenic
TTGTCTATCGGAACATTTAC+GGG 0.334158 1:-19605367 None:intergenic
TAATCACTCTTATAATTTGT+TGG 0.334627 1:+19605341 MsaT001403.1:CDS
CCATCCACACCTGCTCAAAA+TGG 0.342930 1:+19602078 MsaT001403.1:CDS
TAAAGCTGGTTATGCATCTT+CGG 0.346795 1:+19602533 MsaT001403.1:CDS
ATTTGGAGGCAATGCAAATA+AGG 0.352626 1:+19602404 MsaT001403.1:CDS
AAAGCTGGTTATGCATCTTC+GGG 0.352663 1:+19602534 MsaT001403.1:CDS
AACTTCTGCAATTGCACACT+TGG 0.359955 1:-19605499 None:intergenic
CTTCAATGTCTTCTGCTGCT+TGG 0.362113 1:+19603018 MsaT001403.1:CDS
TTTGTCTATCGGAACATTTA+CGG 0.362332 1:-19605368 None:intergenic
TATACATCATCAGAAGTTAT+AGG 0.371060 1:+19603735 MsaT001403.1:CDS
GATTCTGATTTCTGGAGAAA+TGG 0.374701 1:+19603182 MsaT001403.1:CDS
AGCTCATAGTAAAGCTTCTA+AGG 0.376735 1:+19600677 MsaT001403.1:CDS
CAAGAAAATCCTTAGTTAAC+GGG 0.380419 1:-19602038 None:intergenic
TGCAATTGCACACTTGGAAC+AGG 0.381293 1:-19605493 None:intergenic
TCCTTAGTTAACGGGGCAGG+GGG 0.382520 1:-19602030 None:intergenic
CAAAACCCTTCTGGATATAC+TGG 0.382889 1:+19604308 MsaT001403.1:CDS
CGGTATTACTCCCTTGCATT+TGG 0.384111 1:+19604521 MsaT001403.1:CDS
TGTAGATTGGGTTGAAGTGC+TGG 0.386202 1:+19605262 MsaT001403.1:intron
TGAACCGGAAAATCTTCTTT+TGG 0.396112 1:-19605526 None:intergenic
GGTTTGCAAGGTGGTATTAG+AGG 0.401865 1:+19602354 MsaT001403.1:CDS
TCCCTCTTGATCTCTTTAAA+GGG 0.403698 1:+19602457 MsaT001403.1:CDS
TTGATCATCGCGGTGATGAT+AGG 0.406511 1:-19601995 None:intergenic
TGGCAATCTGAATCATCATT+TGG 0.407162 1:-19602165 None:intergenic
ATCCTTAGTTAACGGGGCAG+GGG 0.412793 1:-19602031 None:intergenic
TAGGAAAATTTGAGGAAAGA+AGG 0.413097 1:+19601833 MsaT001403.1:intron
CTTAGTTAACGGGGCAGGGG+GGG 0.416027 1:-19602028 None:intergenic
GGAGACTTCTATTTCATTGA+AGG 0.416715 1:+19603574 MsaT001403.1:CDS
TGATCTTACTGCGAAGTTGC+TGG 0.418189 1:+19601915 MsaT001403.1:CDS
AATTCTAATGGTATTTCCAC+TGG 0.420951 1:+19602381 MsaT001403.1:CDS
GAAACCCTTGTGGATGAAAA+CGG 0.423968 1:+19605285 MsaT001403.1:CDS
GGATTATCATCGACGTCATA+AGG 0.425815 1:+19600647 MsaT001403.1:CDS
ATTAGCTCAATTCCCGGTGA+TGG 0.428300 1:-19605432 None:intergenic
CTGCTCAAAATGGCGGCAAC+AGG 0.428871 1:+19602088 MsaT001403.1:CDS
GTTGATATCAGTGTCTCCTT+TGG 0.429670 1:+19603535 MsaT001403.1:CDS
TTAACCAAGTCAAACGAGTT+GGG 0.434205 1:+19605466 MsaT001403.1:CDS
ATTAGAGGTCTCAATTCTAA+TGG 0.436493 1:+19602369 MsaT001403.1:CDS
CTCCTTGCAAATGGATGCAT+TGG 0.437114 1:-19604043 None:intergenic
CAAAGCCTCATCCCTTGACT+TGG 0.437901 1:-19604151 None:intergenic
TTCGCAGCGTTCCTGGGAAA+TGG 0.438881 1:-19602781 None:intergenic
CGGTCTCAACTCCTTGCAAA+TGG 0.440421 1:-19604052 None:intergenic
GTGTCTCCTTTGGCAATTGT+CGG 0.441124 1:+19603545 MsaT001403.1:CDS
ATGTTCATGCTCCTCTGAAA+TGG 0.441547 1:-19604115 None:intergenic
AAATCCTTAGTTAACGGGGC+AGG 0.442282 1:-19602033 None:intergenic
CCAAAATTCATCTCCACAAC+AGG 0.442338 1:-19602333 None:intergenic
CCGGATGAAGTGGCGGTTGG+AGG 0.443148 1:+19600834 MsaT001403.1:CDS
TCACTGCTCTATTTAGAAGT+TGG 0.443446 1:-19604392 None:intergenic
GTGAAGCCAGCTCCGTGAAC+CGG 0.444837 1:-19605541 None:intergenic
TTCCAGATTATTCGCTCGAC+AGG 0.447389 1:+19604235 MsaT001403.1:CDS
CCACCGAATCTTGAGGGCCC+TGG 0.449842 1:+19604498 MsaT001403.1:CDS
CCTCCAACCGCCACTTCATC+CGG 0.453273 1:-19600834 None:intergenic
GGAGAAACTGAGCCTACATA+AGG 0.457144 1:-19605636 None:intergenic
TCATCAGAAGTTATAGGATC+AGG 0.457883 1:+19603741 MsaT001403.1:CDS
ATCAGTACTGACTTTGTGCC+AGG 0.460743 1:-19603614 None:intergenic
CCTGTGTTCGCAGCGTTCCT+GGG 0.462026 1:-19602787 None:intergenic
GGAGACTTGCTGGTCATAAT+CGG 0.463432 1:+19600793 MsaT001403.1:CDS
GGTTCACGGAGCTGGCTTCA+CGG 0.463735 1:+19605543 MsaT001403.1:CDS
CAGTAAGATCAGCTGGTAAA+GGG 0.463985 1:-19601903 None:intergenic
AATCCTTAGTTAACGGGGCA+GGG 0.464494 1:-19602032 None:intergenic
TTTGGCAATTGTCGGTGGAC+AGG 0.466662 1:+19603553 MsaT001403.1:CDS
ACAGGTTGAAAATGGTTTCA+AGG 0.467248 1:+19603996 MsaT001403.1:intron
AGTTGTAGACGGAGACTTGC+TGG 0.469042 1:+19600783 MsaT001403.1:CDS
CGCGAAGATGGCAATTTAGA+CGG 0.469579 1:-19602249 None:intergenic
GGTATTTCCACTGGATTTGG+AGG 0.470739 1:+19602390 MsaT001403.1:CDS
GCAAGAAAATCCTTAGTTAA+CGG 0.472350 1:-19602039 None:intergenic
GATGCATTGGCTATTATCAC+TGG 0.472801 1:-19604030 None:intergenic
AGCTTGGTTGGCTGTTTCAA+AGG 0.474571 1:+19604187 MsaT001403.1:CDS
CCGCCAGGGCCCTCAAGATT+CGG 0.474979 1:-19604501 None:intergenic
AGAGTGATTATTTCTCATCA+TGG 0.481408 1:-19605328 None:intergenic
ACATTGAAGCATAAATTGAT+AGG 0.482024 1:-19603004 None:intergenic
AACTTCACTTCTTTGTCTAT+CGG 0.482737 1:-19605379 None:intergenic
GAGAAACTGAGCCTACATAA+GGG 0.484362 1:-19605635 None:intergenic
GCTAGCATCGAATGAATAAA+GGG 0.487739 1:-19605567 None:intergenic
CAAAGTGTACCATTTAAAGC+TGG 0.488893 1:+19602519 MsaT001403.1:CDS
CAGGTTGAAAATGGTTTCAA+GGG 0.489945 1:+19603997 MsaT001403.1:intron
GCAGTAAGATCAGCTGGTAA+AGG 0.491675 1:-19601904 None:intergenic
GCTATTGCTGATGGTTCTCA+AGG 0.494096 1:+19600912 MsaT001403.1:CDS
TAGTAGTACAACTATGACTT+TGG 0.494147 1:-19602434 None:intergenic
AAATGATGATTCAGATTGCC+AGG 0.494257 1:+19602167 MsaT001403.1:CDS
AACCTGTCGAGCGAATAATC+TGG 0.495792 1:-19604237 None:intergenic
CAGTTTGAATTCAGATACTC+AGG 0.496563 1:+19602575 MsaT001403.1:CDS
GCGAAGATGGCAATTTAGAC+GGG 0.498096 1:-19602248 None:intergenic
TTGTTGACTGCTATTGCTGA+TGG 0.498169 1:+19600903 MsaT001403.1:CDS
TGCAAGGGAGTAATACCGCC+AGG 0.498402 1:-19604516 None:intergenic
TGGAGTTTGATGAAGGAAAA+CGG 0.499920 1:+19600760 MsaT001403.1:CDS
CCTTAGTTAACGGGGCAGGG+GGG 0.499978 1:-19602029 None:intergenic
GTTATAGGATCAGGAGATCC+TGG 0.500739 1:+19603750 MsaT001403.1:CDS
GTATTTCCACCGAATCTTGA+GGG 0.500756 1:+19604492 MsaT001403.1:CDS
GATAAACACTTCGAAGGAGA+AGG 0.501550 1:+19604333 MsaT001403.1:CDS
GGAAGAAACCTCTCTGCTCC+TGG 0.503311 1:+19603596 MsaT001403.1:CDS
AAACCCTTGTGGATGAAAAC+GGG 0.509681 1:+19605286 MsaT001403.1:CDS
ATTTAACTCGAACATCCTCC+TGG 0.512376 1:-19602185 None:intergenic
GCTTGGTTGGCTGTTTCAAA+GGG 0.514045 1:+19604188 MsaT001403.1:CDS
TTCTACACGACCATCAGACT+TGG 0.514057 1:+19602953 MsaT001403.1:CDS
AACTTCGCAGTAAGATCAGC+TGG 0.514594 1:-19601910 None:intergenic
GTATTCCAACAGGATCGTAC+TGG 0.515714 1:+19602722 MsaT001403.1:intron
TGAGATAGAGCACCCATCAC+CGG 0.517584 1:+19605419 MsaT001403.1:CDS
ATTATTTCTCATCATGGCAT+AGG 0.518702 1:-19605322 None:intergenic
CCGTTGGTGGAGTTTGATGA+AGG 0.518926 1:+19600753 MsaT001403.1:CDS
CTCTTTAACAAATGATCCAC+AGG 0.520008 1:+19604578 MsaT001403.1:CDS
GTTGGCTGTTTCAAAGGGAA+AGG 0.520420 1:+19604193 MsaT001403.1:CDS
ATATTGTTTAGGAAAATTTG+AGG 0.520474 1:+19601825 MsaT001403.1:intron
GCTCAGTTTCTCCCTTCAGG+TGG 0.530619 1:+19605646 MsaT001403.1:CDS
AGCATCTACAACGGATTCTG+AGG 0.530622 1:+19604545 MsaT001403.1:CDS
AGTCCCCAACTCGTTTGACT+TGG 0.531710 1:-19605470 None:intergenic
CATATGATCGGCACTACTTG+TGG 0.532505 1:-19602112 None:intergenic
GAAAACGCAGCCGGATGAAG+TGG 0.533996 1:+19600824 MsaT001403.1:CDS
AAGCTTCTAAGGCTTTGTTA+GGG 0.535780 1:+19600688 MsaT001403.1:CDS
CAGCCGGATGAAGTGGCGGT+TGG 0.536524 1:+19600831 MsaT001403.1:CDS
TCTAGGTCGCTGTTTCATTG+AGG 0.538184 1:+19603833 MsaT001403.1:CDS
AGCTTGTACAGATTCTGAAT+AGG 0.538634 1:+19601878 MsaT001403.1:CDS
CCTTCATCAAACTCCACCAA+CGG 0.538649 1:-19600753 None:intergenic
TTGGAGAGTTACATAAGGCC+TGG 0.543328 1:+19602972 MsaT001403.1:CDS
GCGTCGGAGGAAAACGCAGC+CGG 0.543520 1:+19600815 MsaT001403.1:CDS
GAGATAGAGCACCCATCACC+GGG 0.544324 1:+19605420 MsaT001403.1:CDS
TTAGCTCAATTCCCGGTGAT+GGG 0.545019 1:-19605431 None:intergenic
GATACGCATGTGCAAACCAT+GGG 0.547058 1:+19603493 MsaT001403.1:CDS
AGGGTTGTCAACAGAGTCAG+TGG 0.547279 1:+19604353 MsaT001403.1:CDS
GCTTCTTTCTCTCATATGAT+CGG 0.548074 1:-19602124 None:intergenic
GTGTAGTAGGTTTCATCCGT+TGG 0.548903 1:+19600737 MsaT001403.1:CDS
CTGGTCATAATCGGCGTCGG+AGG 0.551550 1:+19600802 MsaT001403.1:CDS
ATCTCATCATAGACCATACC+AGG 0.551607 1:-19603768 None:intergenic
ATTAACCAAGTCAAACGAGT+TGG 0.553160 1:+19605465 MsaT001403.1:CDS
GTAGTAATCCTGTGGATGAA+AGG 0.553754 1:+19602292 MsaT001403.1:CDS
TCTCCTTTGGCAATTGTCGG+TGG 0.554427 1:+19603548 MsaT001403.1:CDS
CAGACTTGGAGAGTTACATA+AGG 0.556368 1:+19602967 MsaT001403.1:CDS
AAAGCCTCATCCCTTGACTT+GGG 0.557399 1:-19604150 None:intergenic
TGTATTTCCACCGAATCTTG+AGG 0.558800 1:+19604491 MsaT001403.1:CDS
GACCCTTTAAAGAGATCAAG+AGG 0.558852 1:-19602459 None:intergenic
GGGGAAATATTTACCTCCTG+TGG 0.559338 1:-19604594 None:intergenic
ATCATCGCGGTGATGATAGG+AGG 0.559471 1:-19601992 None:intergenic
TTCCGTGGAACCCCTTATGT+AGG 0.560906 1:+19605624 MsaT001403.1:CDS
ATTGATAGGACAACACAGCC+AGG 0.564310 1:-19602990 None:intergenic
GGAGACCTCCACGTTCCCCA+TGG 0.566104 1:-19603509 None:intergenic
CCCAGGAACGCTGCGAACAC+AGG 0.566597 1:+19602787 MsaT001403.1:CDS
AGCGTTCCTGGGAAATGGCT+AGG 0.570204 1:-19602776 None:intergenic
TGTAGATGCTGCCAAATGCA+AGG 0.571013 1:-19604532 None:intergenic
ACTGCGAAGTTGCTGGATGT+TGG 0.571292 1:+19601922 MsaT001403.1:CDS
GAGACTTCTATTTCATTGAA+GGG 0.571706 1:+19603575 MsaT001403.1:CDS
GTCGTCATCTCCTCCTGTTG+TGG 0.573533 1:+19602320 MsaT001403.1:CDS
GGAGACACTGATATCAACTC+TGG 0.573695 1:-19603530 None:intergenic
GAGGCCCAAGTCAAGGGATG+AGG 0.576270 1:+19604146 MsaT001403.1:CDS
ATAAACACTTCGAAGGAGAA+GGG 0.579651 1:+19604334 MsaT001403.1:CDS
ATCAACCAGTATATCCAGAA+GGG 0.582981 1:-19604313 None:intergenic
CAGTTAGCATCACACAAAGA+TGG 0.584117 1:+19603230 MsaT001403.1:CDS
ATGTAACTCTCCAAGTCTGA+TGG 0.588830 1:-19602963 None:intergenic
TAGTAGGTTTCATCCGTTGG+TGG 0.589116 1:+19600740 MsaT001403.1:CDS
GACGGCGACCTTTCATCCAC+AGG 0.589209 1:-19602300 None:intergenic
TATTCCAACAGGATCGTACT+GGG 0.590411 1:+19602723 MsaT001403.1:intron
TGTTAGGGAATCAAATGCAA+CGG 0.593606 1:+19600703 MsaT001403.1:CDS
CTCAGTTTCTCCCTTCAGGT+GGG 0.594092 1:+19605647 MsaT001403.1:CDS
TGTGTTTGTGTGTTATTCCG+TGG 0.595100 1:+19605609 MsaT001403.1:CDS
TATCAACCAGTATATCCAGA+AGG 0.595870 1:-19604314 None:intergenic
AATGAGCAAATCAACCATGC+TGG 0.596089 1:-19604427 None:intergenic
AAGCATCCTAGCCATTTCCC+AGG 0.599845 1:+19602770 MsaT001403.1:CDS
CTGGTTGATAAACACTTCGA+AGG 0.600272 1:+19604327 MsaT001403.1:CDS
AGCCTACATAAGGGGTTCCA+CGG 0.602293 1:-19605626 None:intergenic
AGCCAATGCATCCATTTGCA+AGG 0.602317 1:+19604041 MsaT001403.1:CDS
CCAGGGCCCTCAAGATTCGG+TGG 0.602415 1:-19604498 None:intergenic
AGAAGATCTATCAAAAGCGA+AGG 0.602873 1:+19600626 MsaT001403.1:CDS
CAGTTATCAACTTGACACAT+CGG 0.602997 1:-19600600 None:intergenic
AACGCAGCCGGATGAAGTGG+CGG 0.604112 1:+19600827 MsaT001403.1:CDS
TAACCAAGTCAAACGAGTTG+GGG 0.607095 1:+19605467 MsaT001403.1:CDS
GTAGATTGGGTTGAAGTGCT+GGG 0.609912 1:+19605263 MsaT001403.1:intron
CCGAATCTTGAGGGCCCTGG+CGG 0.610502 1:+19604501 MsaT001403.1:CDS
AAGGAAAACGGAGTTGTAGA+CGG 0.611269 1:+19600772 MsaT001403.1:CDS
AAACAGCGACCTAGAACACT+AGG 0.611826 1:-19603825 None:intergenic
ATCGGAAAGTAGTAATCCTG+TGG 0.613254 1:+19602284 MsaT001403.1:CDS
TGCATTGCCTCCAAATCCAG+TGG 0.615608 1:-19602397 None:intergenic
TTAGCAGCAACCTGATTCAA+CGG 0.616434 1:-19600864 None:intergenic
TCGTCAAATTCAGACTCAAG+CGG 0.618525 1:-19604072 None:intergenic
GGATACGCATGTGCAAACCA+TGG 0.620975 1:+19603492 MsaT001403.1:CDS
GAAAAGAAAGTGCACCAGCA+TGG 0.621320 1:+19604413 MsaT001403.1:CDS
TATGATGAGATAAAATTGAG+TGG 0.621764 1:+19603780 MsaT001403.1:CDS
CTCATCATGGCATAGGCATG+TGG 0.622626 1:-19605315 None:intergenic
TGTGCAAACCATGGGGAACG+TGG 0.625779 1:+19603501 MsaT001403.1:CDS
GTAGATGCTGCCAAATGCAA+GGG 0.626471 1:-19604531 None:intergenic
CATATGAGAGAAAGAAGCAG+TGG 0.630729 1:+19602129 MsaT001403.1:CDS
AAATTCATCTCCACAACAGG+AGG 0.631154 1:-19602330 None:intergenic
AGGATCAGGAGATCCTGGTA+TGG 0.632079 1:+19603755 MsaT001403.1:CDS
AATGTGTGATGCCATTTCAG+AGG 0.632308 1:+19604104 MsaT001403.1:CDS
AGCAGGTGTGGATGGAGTCG+TGG 0.636214 1:-19602070 None:intergenic
GCATTTGGCAGCATCTACAA+CGG 0.637611 1:+19604536 MsaT001403.1:CDS
TGAGTATCTGAATTCAAACT+GGG 0.640355 1:-19602573 None:intergenic
TTGCTGGTCATAATCGGCGT+CGG 0.649273 1:+19600799 MsaT001403.1:CDS
AGAAACTGAGCCTACATAAG+GGG 0.649316 1:-19605634 None:intergenic
TCATCGCGGTGATGATAGGA+GGG 0.658389 1:-19601991 None:intergenic
AAGAAAATCCTTAGTTAACG+GGG 0.660888 1:-19602037 None:intergenic
ACCCTTTAAAGAGATCAAGA+GGG 0.661561 1:-19602458 None:intergenic
TCCACACCTGCTCAAAATGG+CGG 0.661570 1:+19602081 MsaT001403.1:CDS
GCAAGGGAGTAATACCGCCA+GGG 0.662761 1:-19604515 None:intergenic
GCATCTACAACGGATTCTGA+GGG 0.663873 1:+19604546 MsaT001403.1:CDS
TGTCCACCGACAATTGCCAA+AGG 0.680091 1:-19603551 None:intergenic
GGAAAGAAACTGTTGCATGT+TGG 0.681755 1:+19604284 MsaT001403.1:CDS
GCTTGAGTCTGAATTTGACG+AGG 0.690205 1:+19604074 MsaT001403.1:CDS
AAGGTTCTCGAATGTGAACG+AGG 0.693475 1:+19604212 MsaT001403.1:CDS
GTATCTGAATTCAAACTGGG+AGG 0.694347 1:-19602570 None:intergenic
TTTAACAAATGATCCACAGG+AGG 0.702723 1:+19604581 MsaT001403.1:CDS
ACAACAGGAGGAGATGACGA+CGG 0.711986 1:-19602318 None:intergenic
GAATTAAAGAATCAACACGT+CGG 0.714085 1:-19603151 None:intergenic
GCAAACCATGGGGAACGTGG+AGG 0.714807 1:+19603504 MsaT001403.1:CDS
TGTTGTTCGGTTGATCATCG+CGG 0.737035 1:-19602005 None:intergenic
ACTTTGTGCCAGGAGCAGAG+AGG 0.740178 1:-19603604 None:intergenic
ATACGCATGTGCAAACCATG+GGG 0.741686 1:+19603494 MsaT001403.1:CDS
GCAGCAACCTGATTCAACGG+CGG 0.745706 1:-19600861 None:intergenic
TGATGATTCAGATTGCCAGG+AGG 0.754316 1:+19602170 MsaT001403.1:CDS
GAAGTGCTGGGAAACCCTTG+TGG 0.767474 1:+19605275 MsaT001403.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 19600603 19605695 19600603 ID=MsaG001403
Chr1 mRNA 19600603 19605695 19600603 ID=MsaT001403.1;Parent=MsaG001403
Chr1 exon 19600603 19600933 19600603 ID=MsaT001403.1.exon1;Parent=MsaT001403.1
Chr1 CDS 19600603 19600933 19600603 ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1 exon 19601836 19602596 19601836 ID=MsaT001403.1.exon2;Parent=MsaT001403.1
Chr1 CDS 19601836 19602596 19601836 ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1 exon 19602734 19602808 19602734 ID=MsaT001403.1.exon3;Parent=MsaT001403.1
Chr1 CDS 19602734 19602808 19602734 ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1 exon 19602939 19603046 19602939 ID=MsaT001403.1.exon4;Parent=MsaT001403.1
Chr1 CDS 19602939 19603046 19602939 ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1 exon 19603134 19603251 19603134 ID=MsaT001403.1.exon5;Parent=MsaT001403.1
Chr1 CDS 19603134 19603251 19603134 ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1 exon 19603489 19603624 19603489 ID=MsaT001403.1.exon6;Parent=MsaT001403.1
Chr1 CDS 19603489 19603624 19603489 ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1 exon 19603710 19603854 19603710 ID=MsaT001403.1.exon7;Parent=MsaT001403.1
Chr1 CDS 19603710 19603854 19603710 ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1 exon 19604000 19604602 19604000 ID=MsaT001403.1.exon8;Parent=MsaT001403.1
Chr1 CDS 19604000 19604602 19604000 ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1 exon 19605267 19605695 19605267 ID=MsaT001403.1.exon9;Parent=MsaT001403.1
Chr1 CDS 19605267 19605695 19605267 ID=cds.MsaT001403.1;Parent=MsaT001403.1
Gene Sequence

>MsaT001403.1

ATGTGTCAAGTTGATAACTGCAAAGAAGATCTATCAAAAGCGAAGGATTATCATCGACGTCATAAGGTGTGTGAAGCTCATAGTAAAGCTTCTAAGGCTTTGTTAGGGAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCGTTGGTGGAGTTTGATGAAGGAAAACGGAGTTGTAGACGGAGACTTGCTGGTCATAATCGGCGTCGGAGGAAAACGCAGCCGGATGAAGTGGCGGTTGGAGGTTCGCCGCCGTTGAATCAGGTTGCTGCTAATTTGGAGATTTTTAACTTGTTGACTGCTATTGCTGATGGTTCTCAAGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCAGATAAAGAGCAGCTTGTACAGATTCTGAATAGGATCCCTTTACCAGCTGATCTTACTGCGAAGTTGCTGGATGTTGGTAATAATTTGAATGCGAAAAATGATAATGTGCAAATGCAAACTTCACCCTCCTATCATCACCGCGATGATCAACCGAACAACACCCCCCCTGCCCCGTTAACTAAGGATTTTCTTGCTGTTCTTTCCACGACTCCATCCACACCTGCTCAAAATGGCGGCAACAGGTCCACAAGTAGTGCCGATCATATGAGAGAAAGAAGCAGTGGCAGTTCTCAGTCTCCAAATGATGATTCAGATTGCCAGGAGGATGTTCGAGTTAAATTGCCGCTGCAACTTTTTGGCTCGTCTCCAGAAAACTACAGCCCGTCTAAATTGCCATCTTCGCGAAAGTATTTTTCATCGGAAAGTAGTAATCCTGTGGATGAAAGGTCGCCGTCGTCATCTCCTCCTGTTGTGGAGATGAATTTTGGTTTGCAAGGTGGTATTAGAGGTCTCAATTCTAATGGTATTTCCACTGGATTTGGAGGCAATGCAAATAAGGAAACTAGCCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGGTCAAAATCAAATAACATGATTCAACAATCTAGTTCAGTTCAAAGTGTACCATTTAAAGCTGGTTATGCATCTTCGGGTTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGATCGTACTGGGAGAATAATGTTTAAATTGTTTGACAAGCATCCTAGCCATTTCCCAGGAACGCTGCGAACACAGATTTACAATTGGCTTTCTACACGACCATCAGACTTGGAGAGTTACATAAGGCCTGGCTGTGTTGTCCTATCAATTTATGCTTCAATGTCTTCTGCTGCTTGGGTGCAATTAGAAGAAAACTTCGTCCGACGTGTTGATTCTTTAATTCATAACTCAGATTCTGATTTCTGGAGAAATGGAAGATTTCTTGTTTATTCTGGCAGTCAGTTAGCATCACACAAAGATGGAAGGATACGCATGTGCAAACCATGGGGAACGTGGAGGTCTCCAGAGTTGATATCAGTGTCTCCTTTGGCAATTGTCGGTGGACAGGAGACTTCTATTTCATTGAAGGGAAGAAACCTCTCTGCTCCTGGCACAAAGATTCATTGCACTGATGCTGACTGTTATACATCATCAGAAGTTATAGGATCAGGAGATCCTGGTATGGTCTATGATGAGATAAAATTGAGTGGTTTTGAAATTCAGAATACATCTCCTAGTGTTCTAGGTCGCTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGAAACAGTTTTCCAGTGATAATAGCCAATGCATCCATTTGCAAGGAGTTGAGACCGCTTGAGTCTGAATTTGACGAGGATGAAAAAATGTGTGATGCCATTTCAGAGGAGCATGAACATAATTTTGGGAGGCCCAAGTCAAGGGATGAGGCTTTGCACTTTTTGAATGAGCTTGGTTGGCTGTTTCAAAGGGAAAGGTTCTCGAATGTGAACGAGGTTCCAGATTATTCGCTCGACAGGTTCAAATTTGTACTGACGTTTTCTGTGGAAAGAAACTGTTGCATGTTGGTCAAAACCCTTCTGGATATACTGGTTGATAAACACTTCGAAGGAGAAGGGTTGTCAACAGAGTCAGTGGAGATGCTGAAAGCAATCCAACTTCTAAATAGAGCAGTGAAAAGAAAGTGCACCAGCATGGTTGATTTGCTCATTAACTATTCTATAACTAGCAAAAATGACACATCCAAGAAATATGTATTTCCACCGAATCTTGAGGGCCCTGGCGGTATTACTCCCTTGCATTTGGCAGCATCTACAACGGATTCTGAGGGTGTAATTGACTCTTTAACAAATGATCCACAGGAGATTGGGTTGAAGTGCTGGGAAACCCTTGTGGATGAAAACGGGCAGACTCCACATGCCTATGCCATGATGAGAAATAATCACTCTTATAATTTGTTGGTTGCCCGTAAATGTTCCGATAGACAAAGAAGTGAAGTTTCAGTTAGAATTGATAATGAGATAGAGCACCCATCACCGGGAATTGAGCTAATGCAAAAGCGAATTAACCAAGTCAAACGAGTTGGGGACTCCTGTTCCAAGTGTGCAATTGCAGAAGTTCGCGCCAAAAGAAGATTTTCCGGTTCACGGAGCTGGCTTCACGGTCCCTTTATTCATTCGATGCTAGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTATTCCGTGGAACCCCTTATGTAGGCTCAGTTTCTCCCTTCAGGTGGGAAAACTTGAATTATGGCACAATGTAA

Protein sequence

>MsaT001403.1

MCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLVEFDEGKRSCRRRLAGHNRRRRKTQPDEVAVGGSPPLNQVAANLEIFNLLTAIADGSQGKFEERRSQVPDKEQLVQILNRIPLPADLTAKLLDVGNNLNAKNDNVQMQTSPSYHHRDDQPNNTPPAPLTKDFLAVLSTTPSTPAQNGGNRSTSSADHMRERSSGSSQSPNDDSDCQEDVRVKLPLQLFGSSPENYSPSKLPSSRKYFSSESSNPVDERSPSSSPPVVEMNFGLQGGIRGLNSNGISTGFGGNANKETSQSHSCTTIPLDLFKGSKSNNMIQQSSSVQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSTRPSDLESYIRPGCVVLSIYASMSSAAWVQLEENFVRRVDSLIHNSDSDFWRNGRFLVYSGSQLASHKDGRIRMCKPWGTWRSPELISVSPLAIVGGQETSISLKGRNLSAPGTKIHCTDADCYTSSEVIGSGDPGMVYDEIKLSGFEIQNTSPSVLGRCFIEVENGFKGNSFPVIIANASICKELRPLESEFDEDEKMCDAISEEHEHNFGRPKSRDEALHFLNELGWLFQRERFSNVNEVPDYSLDRFKFVLTFSVERNCCMLVKTLLDILVDKHFEGEGLSTESVEMLKAIQLLNRAVKRKCTSMVDLLINYSITSKNDTSKKYVFPPNLEGPGGITPLHLAASTTDSEGVIDSLTNDPQEIGLKCWETLVDENGQTPHAYAMMRNNHSYNLLVARKCSDRQRSEVSVRIDNEIEHPSPGIELMQKRINQVKRVGDSCSKCAIAEVRAKRRFSGSRSWLHGPFIHSMLAVAAVCVCVCVLFRGTPYVGSVSPFRWENLNYGTM*