AlfalfaGEDB | MsaG001403

M. sativa ssp. caerulea / MsaG001403

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF03110.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001403	XP_003589683.1	97.669	901	21	0	1	901	103	1003	0.0	1830

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001403	sp\|Q8RY95\|SPL14_ARATH	50.896	949	386	22	1	901	119	1035	0.0	836

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001403	tr\|G7IA23\|G7IA23_MEDTR	97.669	901	21	0	1	901	103	1003	0.0	1830

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TFs/TRs:

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Gene ID	Type	Classification
MsaG001403	TF	SBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000024	MsaG001403	0.821035	8.781004e-53	1.984954e-50
MsaG000045	MsaG001403	0.857106	3.982037e-62	2.777590e-59
MsaG000062	MsaG001403	0.823866	1.944519e-53	4.742580e-51
MsaG000070	MsaG001403	0.850856	2.471234e-60	1.379493e-57
MsaG000083	MsaG001403	0.876029	4.015782e-68	6.046127e-65
MsaG000113	MsaG001403	0.863181	5.935300e-64	5.217035e-61
MsaG000117	MsaG001403	0.855580	1.110330e-61	7.325833e-59
MsaG000128	MsaG001403	0.808808	4.400312e-50	7.301643e-48
MsaG000151	MsaG001403	0.812114	8.570839e-51	1.541315e-48
MsaG000153	MsaG001403	0.818171	3.926737e-52	8.232480e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001403	MtrunA17_Chr1g0162871	97.669	901	21	0	1	901	103	1003	0.0	1830
MsaG001403	MtrunA17_Chr7g0270541	33.833	600	352	13	332	900	415	1000	4.00e-94	318
MsaG001403	MtrunA17_Chr7g0270541	73.404	94	25	0	1	94	144	237	1.32e-37	152
MsaG001403	MtrunA17_Chr1g0194121	33.274	565	343	11	362	900	446	1002	8.86e-89	304
MsaG001403	MtrunA17_Chr1g0194121	75.862	87	20	1	1	87	146	231	1.91e-35	145
MsaG001403	MtrunA17_Chr2g0302791	31.379	580	339	16	364	901	463	1025	7.08e-83	288
MsaG001403	MtrunA17_Chr2g0302791	64.486	107	38	0	1	107	138	244	1.56e-38	155
MsaG001403	MtrunA17_Chr8g0386271	67.901	81	26	0	2	82	99	179	3.67e-32	129
MsaG001403	MtrunA17_Chr8g0360361	67.059	85	28	0	2	86	65	149	2.41e-31	121
MsaG001403	MtrunA17_Chr2g0282521	72.000	75	21	0	2	76	64	138	1.19e-30	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001403	AT1G20980.1	50.896	949	386	22	1	901	119	1035	0.0	836
MsaG001403	AT1G76580.1	49.737	951	383	22	2	901	114	1020	0.0	830
MsaG001403	AT1G76580.2	48.933	609	232	17	2	560	114	693	1.34e-166	502
MsaG001403	AT1G76580.3	48.929	607	231	17	2	558	114	691	1.67e-165	499
MsaG001403	AT2G47070.2	33.993	556	315	14	364	900	229	751	1.74e-87	295
MsaG001403	AT2G47070.2	58.025	81	32	1	27	107	2	80	1.95e-20	97.4
MsaG001403	AT3G60030.1	35.536	560	308	17	363	900	398	926	6.83e-87	298
MsaG001403	AT3G60030.1	66.038	106	35	1	2	107	127	231	1.45e-36	149
MsaG001403	AT2G47070.1	33.993	556	315	14	364	900	358	880	2.21e-86	295
MsaG001403	AT2G47070.1	62.617	107	38	1	1	107	105	209	5.14e-35	144

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Find 227 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCGACCTAGAACACT+AGG	0.611826	1:-19603825	None:intergenic
AAACCCTTGTGGATGAAAAC+GGG	0.509681	1:+19605286	MsaT001403.1:CDS
AAAGCCTCATCCCTTGACTT+GGG	0.557399	1:-19604150	None:intergenic
AAAGCTGGTTATGCATCTTC+GGG	0.352663	1:+19602534	MsaT001403.1:CDS
AAAGCTTCTAAGGCTTTGTT+AGG	0.256564	1:+19600687	MsaT001403.1:CDS
AAATCCTTAGTTAACGGGGC+AGG	0.442282	1:-19602033	None:intergenic
AAATGATGATTCAGATTGCC+AGG	0.494257	1:+19602167	MsaT001403.1:CDS
AAATTCATCTCCACAACAGG+AGG	0.631154	1:-19602330	None:intergenic
AACCTGTCGAGCGAATAATC+TGG	0.495792	1:-19604237	None:intergenic
AACGCAGCCGGATGAAGTGG+CGG	0.604112	1:+19600827	MsaT001403.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	19600603	19605695	19600603	ID=MsaG001403
Chr1	mRNA	19600603	19605695	19600603	ID=MsaT001403.1;Parent=MsaG001403
Chr1	exon	19600603	19600933	19600603	ID=MsaT001403.1.exon1;Parent=MsaT001403.1
Chr1	CDS	19600603	19600933	19600603	ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1	exon	19601836	19602596	19601836	ID=MsaT001403.1.exon2;Parent=MsaT001403.1
Chr1	CDS	19601836	19602596	19601836	ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1	exon	19602734	19602808	19602734	ID=MsaT001403.1.exon3;Parent=MsaT001403.1
Chr1	CDS	19602734	19602808	19602734	ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1	exon	19602939	19603046	19602939	ID=MsaT001403.1.exon4;Parent=MsaT001403.1
Chr1	CDS	19602939	19603046	19602939	ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1	exon	19603134	19603251	19603134	ID=MsaT001403.1.exon5;Parent=MsaT001403.1
Chr1	CDS	19603134	19603251	19603134	ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1	exon	19603489	19603624	19603489	ID=MsaT001403.1.exon6;Parent=MsaT001403.1
Chr1	CDS	19603489	19603624	19603489	ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1	exon	19603710	19603854	19603710	ID=MsaT001403.1.exon7;Parent=MsaT001403.1
Chr1	CDS	19603710	19603854	19603710	ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1	exon	19604000	19604602	19604000	ID=MsaT001403.1.exon8;Parent=MsaT001403.1
Chr1	CDS	19604000	19604602	19604000	ID=cds.MsaT001403.1;Parent=MsaT001403.1
Chr1	exon	19605267	19605695	19605267	ID=MsaT001403.1.exon9;Parent=MsaT001403.1
Chr1	CDS	19605267	19605695	19605267	ID=cds.MsaT001403.1;Parent=MsaT001403.1

Gene Sequence

>MsaT001403.1

ATGTGTCAAGTTGATAACTGCAAAGAAGATCTATCAAAAGCGAAGGATTATCATCGACGTCATAAGGTGTGTGAAGCTCATAGTAAAGCTTCTAAGGCTTTGTTAGGGAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCGTTGGTGGAGTTTGATGAAGGAAAACGGAGTTGTAGACGGAGACTTGCTGGTCATAATCGGCGTCGGAGGAAAACGCAGCCGGATGAAGTGGCGGTTGGAGGTTCGCCGCCGTTGAATCAGGTTGCTGCTAATTTGGAGATTTTTAACTTGTTGACTGCTATTGCTGATGGTTCTCAAGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCAGATAAAGAGCAGCTTGTACAGATTCTGAATAGGATCCCTTTACCAGCTGATCTTACTGCGAAGTTGCTGGATGTTGGTAATAATTTGAATGCGAAAAATGATAATGTGCAAATGCAAACTTCACCCTCCTATCATCACCGCGATGATCAACCGAACAACACCCCCCCTGCCCCGTTAACTAAGGATTTTCTTGCTGTTCTTTCCACGACTCCATCCACACCTGCTCAAAATGGCGGCAACAGGTCCACAAGTAGTGCCGATCATATGAGAGAAAGAAGCAGTGGCAGTTCTCAGTCTCCAAATGATGATTCAGATTGCCAGGAGGATGTTCGAGTTAAATTGCCGCTGCAACTTTTTGGCTCGTCTCCAGAAAACTACAGCCCGTCTAAATTGCCATCTTCGCGAAAGTATTTTTCATCGGAAAGTAGTAATCCTGTGGATGAAAGGTCGCCGTCGTCATCTCCTCCTGTTGTGGAGATGAATTTTGGTTTGCAAGGTGGTATTAGAGGTCTCAATTCTAATGGTATTTCCACTGGATTTGGAGGCAATGCAAATAAGGAAACTAGCCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGGTCAAAATCAAATAACATGATTCAACAATCTAGTTCAGTTCAAAGTGTACCATTTAAAGCTGGTTATGCATCTTCGGGTTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGATCGTACTGGGAGAATAATGTTTAAATTGTTTGACAAGCATCCTAGCCATTTCCCAGGAACGCTGCGAACACAGATTTACAATTGGCTTTCTACACGACCATCAGACTTGGAGAGTTACATAAGGCCTGGCTGTGTTGTCCTATCAATTTATGCTTCAATGTCTTCTGCTGCTTGGGTGCAATTAGAAGAAAACTTCGTCCGACGTGTTGATTCTTTAATTCATAACTCAGATTCTGATTTCTGGAGAAATGGAAGATTTCTTGTTTATTCTGGCAGTCAGTTAGCATCACACAAAGATGGAAGGATACGCATGTGCAAACCATGGGGAACGTGGAGGTCTCCAGAGTTGATATCAGTGTCTCCTTTGGCAATTGTCGGTGGACAGGAGACTTCTATTTCATTGAAGGGAAGAAACCTCTCTGCTCCTGGCACAAAGATTCATTGCACTGATGCTGACTGTTATACATCATCAGAAGTTATAGGATCAGGAGATCCTGGTATGGTCTATGATGAGATAAAATTGAGTGGTTTTGAAATTCAGAATACATCTCCTAGTGTTCTAGGTCGCTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGAAACAGTTTTCCAGTGATAATAGCCAATGCATCCATTTGCAAGGAGTTGAGACCGCTTGAGTCTGAATTTGACGAGGATGAAAAAATGTGTGATGCCATTTCAGAGGAGCATGAACATAATTTTGGGAGGCCCAAGTCAAGGGATGAGGCTTTGCACTTTTTGAATGAGCTTGGTTGGCTGTTTCAAAGGGAAAGGTTCTCGAATGTGAACGAGGTTCCAGATTATTCGCTCGACAGGTTCAAATTTGTACTGACGTTTTCTGTGGAAAGAAACTGTTGCATGTTGGTCAAAACCCTTCTGGATATACTGGTTGATAAACACTTCGAAGGAGAAGGGTTGTCAACAGAGTCAGTGGAGATGCTGAAAGCAATCCAACTTCTAAATAGAGCAGTGAAAAGAAAGTGCACCAGCATGGTTGATTTGCTCATTAACTATTCTATAACTAGCAAAAATGACACATCCAAGAAATATGTATTTCCACCGAATCTTGAGGGCCCTGGCGGTATTACTCCCTTGCATTTGGCAGCATCTACAACGGATTCTGAGGGTGTAATTGACTCTTTAACAAATGATCCACAGGAGATTGGGTTGAAGTGCTGGGAAACCCTTGTGGATGAAAACGGGCAGACTCCACATGCCTATGCCATGATGAGAAATAATCACTCTTATAATTTGTTGGTTGCCCGTAAATGTTCCGATAGACAAAGAAGTGAAGTTTCAGTTAGAATTGATAATGAGATAGAGCACCCATCACCGGGAATTGAGCTAATGCAAAAGCGAATTAACCAAGTCAAACGAGTTGGGGACTCCTGTTCCAAGTGTGCAATTGCAGAAGTTCGCGCCAAAAGAAGATTTTCCGGTTCACGGAGCTGGCTTCACGGTCCCTTTATTCATTCGATGCTAGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTATTCCGTGGAACCCCTTATGTAGGCTCAGTTTCTCCCTTCAGGTGGGAAAACTTGAATTATGGCACAATGTAA

Protein sequence

>MsaT001403.1

MCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLVEFDEGKRSCRRRLAGHNRRRRKTQPDEVAVGGSPPLNQVAANLEIFNLLTAIADGSQGKFEERRSQVPDKEQLVQILNRIPLPADLTAKLLDVGNNLNAKNDNVQMQTSPSYHHRDDQPNNTPPAPLTKDFLAVLSTTPSTPAQNGGNRSTSSADHMRERSSGSSQSPNDDSDCQEDVRVKLPLQLFGSSPENYSPSKLPSSRKYFSSESSNPVDERSPSSSPPVVEMNFGLQGGIRGLNSNGISTGFGGNANKETSQSHSCTTIPLDLFKGSKSNNMIQQSSSVQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSTRPSDLESYIRPGCVVLSIYASMSSAAWVQLEENFVRRVDSLIHNSDSDFWRNGRFLVYSGSQLASHKDGRIRMCKPWGTWRSPELISVSPLAIVGGQETSISLKGRNLSAPGTKIHCTDADCYTSSEVIGSGDPGMVYDEIKLSGFEIQNTSPSVLGRCFIEVENGFKGNSFPVIIANASICKELRPLESEFDEDEKMCDAISEEHEHNFGRPKSRDEALHFLNELGWLFQRERFSNVNEVPDYSLDRFKFVLTFSVERNCCMLVKTLLDILVDKHFEGEGLSTESVEMLKAIQLLNRAVKRKCTSMVDLLINYSITSKNDTSKKYVFPPNLEGPGGITPLHLAASTTDSEGVIDSLTNDPQEIGLKCWETLVDENGQTPHAYAMMRNNHSYNLLVARKCSDRQRSEVSVRIDNEIEHPSPGIELMQKRINQVKRVGDSCSKCAIAEVRAKRRFSGSRSWLHGPFIHSMLAVAAVCVCVCVLFRGTPYVGSVSPFRWENLNYGTM*