AlfalfaGEDB | MsaG001410

M. sativa ssp. caerulea / MsaG001410

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001410	XP_013442314.1	97.163	282	7	1	1	281	1	282	0.0	565

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001410	sp\|Q700D9\|MYBF_ARATH	72.152	79	17	1	1	74	1	79	4.31e-31	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001410	tr\|A0A072TFN8\|A0A072TFN8_MEDTR	97.163	282	7	1	1	281	1	282	0.0	565

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TFs/TRs:

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Gene ID	Type	Classification
MsaG001410	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001410	MtrunA17_Chr1g0162931	97.163	282	7	1	1	281	1	282	0.0	565
MsaG001410	MtrunA17_Chr1g0210911	47.619	336	113	15	2	281	3	331	8.57e-74	229
MsaG001410	MtrunA17_Chr2g0320231	69.737	76	23	0	5	80	84	159	4.80e-31	119
MsaG001410	MtrunA17_Chr8g0379121	68.000	75	24	0	6	80	99	173	3.91e-30	117
MsaG001410	MtrunA17_Chr2g0288601	73.438	64	17	0	6	69	59	122	9.15e-29	106
MsaG001410	MtrunA17_Chr7g0243081	65.278	72	25	0	3	74	56	127	2.67e-28	111
MsaG001410	MtrunA17_Chr2g0283951	61.364	88	25	2	6	84	77	164	1.93e-27	109
MsaG001410	MtrunA17_Chr3g0095611	61.765	68	26	0	10	77	11	78	8.74e-25	98.6
MsaG001410	MtrunA17_Chr6g0479431	65.517	58	20	0	17	74	201	258	1.05e-21	93.2
MsaG001410	MtrunA17_Chr8g0366281	67.241	58	19	0	17	74	172	229	1.33e-21	92.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001410	AT1G14600.1	72.152	79	17	1	1	74	1	79	4.38e-32	119
MsaG001410	AT2G02060.2	82.258	62	11	0	10	71	21	82	6.57e-31	116
MsaG001410	AT2G02060.1	82.258	62	11	0	10	71	21	82	6.57e-31	116
MsaG001410	AT4G04605.1	68.493	73	23	0	9	81	5	77	3.50e-30	113
MsaG001410	AT2G40260.1	73.913	69	18	0	8	76	72	140	1.85e-28	112
MsaG001410	AT2G38300.1	69.014	71	22	0	10	80	46	116	4.47e-27	108
MsaG001410	AT2G42660.1	69.841	63	19	0	10	72	42	104	4.36e-26	103
MsaG001410	AT4G04555.1	53.333	75	35	0	6	80	2	76	2.10e-22	89.7
MsaG001410	AT1G32240.2	65.517	58	20	0	17	74	212	269	6.18e-21	91.7
MsaG001410	AT1G32240.1	65.517	58	20	0	17	74	212	269	6.83e-21	91.7

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Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGAGTAGTTGTGGA+AGG	0.546541	1:-19711505	None:intergenic
AACTAATTTGGACCTATCTT+TGG	0.259886	1:-19707478	MsaT001410.1:CDS
AAGAAGCATTACTTCTCTGA+GGG	0.576698	1:+19707565	None:intergenic
AAGAATGAGTAGTTGTGGAA+GGG	0.598417	1:-19711504	None:intergenic
ACAAAGCAACGATGAAGTTC+AGG	0.401903	1:+19711428	None:intergenic
ACAAGAAACTGATTTGCTCC+AGG	0.584537	1:-19709658	MsaT001410.1:intron
ACAGAAATTTCTCCCCAAAA+AGG	0.367281	1:-19710484	MsaT001410.1:intron
ACATGTTAAGAGCCATTTGC+AGG	0.373744	1:-19711197	MsaT001410.1:intron
ACGTTCAAATGGCCAAAGAT+AGG	0.495295	1:+19707466	None:intergenic
ACTTCTCTGAGGGGAAATAT+TGG	0.286018	1:+19707575	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	19707470	19711522	19707470	ID=MsaG001410
Chr1	mRNA	19707470	19711522	19707470	ID=MsaT001410.1;Parent=MsaG001410
Chr1	exon	19707470	19707712	19707470	ID=MsaT001410.1.exon6;Parent=MsaT001410.1
Chr1	CDS	19707470	19707712	19707470	ID=cds.MsaT001410.1;Parent=MsaT001410.1
Chr1	exon	19709659	19709893	19709659	ID=MsaT001410.1.exon5;Parent=MsaT001410.1
Chr1	CDS	19709659	19709893	19709659	ID=cds.MsaT001410.1;Parent=MsaT001410.1
Chr1	exon	19710485	19710611	19710485	ID=MsaT001410.1.exon4;Parent=MsaT001410.1
Chr1	CDS	19710485	19710611	19710485	ID=cds.MsaT001410.1;Parent=MsaT001410.1
Chr1	exon	19711066	19711102	19711066	ID=MsaT001410.1.exon3;Parent=MsaT001410.1
Chr1	CDS	19711066	19711102	19711066	ID=cds.MsaT001410.1;Parent=MsaT001410.1
Chr1	exon	19711198	19711274	19711198	ID=MsaT001410.1.exon2;Parent=MsaT001410.1
Chr1	CDS	19711198	19711274	19711198	ID=cds.MsaT001410.1;Parent=MsaT001410.1
Chr1	exon	19711396	19711522	19711396	ID=MsaT001410.1.exon1;Parent=MsaT001410.1
Chr1	CDS	19711396	19711522	19711396	ID=cds.MsaT001410.1;Parent=MsaT001410.1

Gene Sequence

>MsaT001410.1

ATGAGTAGTTGTGGAAGGGAAGGTGTTGTGAGACAATATGTAAGATCAAAGGTTCCTCGTTTAAGATGGACACCTGAACTTCATCGTTGCTTTGTTTATGCCATTGAAACTCTTGGTGGTCATCAAAAGGCTACTCCTAAGCTTGTTCTTCAGTTGATGGATGTTAAAGGGTTAACAATTTCACATGTTAAGAGCCATTTGCAGATGTATAGGAGTATGAGAGGTGACTCATGCAAACAAGATAGGACTACTTCCGTACATAAAAAACAATCTTTTCTGGAGCATGATGATGATGGGTTTAGAGATCATGAATCTCTTGGAATGGAATCTGATTCTCTCTTTAGCTACAGAAATTTCTCCCCAAAAAGAGCTAGAATCGAGAAGAGAAATTCCCTCTCAGGAATCCTTGAATGCAGAGAAAGAATATGTGAAGAAGTTCCAAATCCATACACTACTTTTTATGATTATGTGCAGGACATGGTTCAGCAACAGCAGAAGGGAATAAAGGAGATTTGTTGTGTTGGTTCAATATGGCATACTCCTCAACCACAATATTTCACAATCTTTCCAGTGCTACCAAAACAAGAAACTGATTTGCTCCAGGTCACCAAGTTAAATGAAAAAAAGCATGTGAATGAAATTGGCAAGACTAAGAGTGTACGTGCAGAAGATGAAGAAGATATAAGGGGTTGTGAGTTGTCATTATCAATTTCATTGCCCAATATTTCCCCTCAGAGAAGTAATGCTTCTTCAGCCAATGATATGAGAAACTCTGGATTTAGCAACTATTTGGGTTGTTCCACCGTCCAAAACATAACTAATTTGGACCTATCTTTGGCCATTTGA

Protein sequence

>MsaT001410.1

MSSCGREGVVRQYVRSKVPRLRWTPELHRCFVYAIETLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDSCKQDRTTSVHKKQSFLEHDDDGFRDHESLGMESDSLFSYRNFSPKRARIEKRNSLSGILECRERICEEVPNPYTTFYDYVQDMVQQQQKGIKEICCVGSIWHTPQPQYFTIFPVLPKQETDLLQVTKLNEKKHVNEIGKTKSVRAEDEEDIRGCELSLSISLPNISPQRSNASSANDMRNSGFSNYLGCSTVQNITNLDLSLAI*