AlfalfaGEDB | MsaG001415

M. sativa ssp. caerulea / MsaG001415

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008356 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001415	XP_024634627.1	81.559	526	11	4	1	441	1	525	0.0	780

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001415	sp\|Q8GYC1\|IDD4_ARATH	40.848	448	164	14	41	404	52	482	7.70e-84	269

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001415	tr\|A0A396JPT4\|A0A396JPT4_MEDTR	81.559	526	11	4	1	441	1	525	0.0	780

TFs/TRs:

Gene ID	Type	Classification
MsaG001415	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000519	MsaG001415	0.807250	9.411212e-50	1.504200e-47
MsaG001156	MsaG001415	0.812981	5.551590e-51	1.020142e-48
MsaG001179	MsaG001415	0.823305	2.627300e-53	6.311180e-51
MsaG001413	MsaG001415	0.929893	9.841740e-93	3.972918e-88
MsaG001414	MsaG001415	0.947214	3.248859e-105	5.778719e-100
MsaG001415	MsaG002016	0.834458	5.388764e-56	1.776052e-53
MsaG001415	MsaG003276	0.811792	1.006554e-50	1.795881e-48
MsaG001415	MsaG003288	0.828786	1.326959e-54	3.709450e-52
MsaG001415	MsaG003374	0.825502	8.039261e-54	2.050400e-51
MsaG001415	MsaG003575	0.807902	6.851064e-50	1.112331e-47
MsaG001415	MsaG004946	0.822249	4.615101e-53	1.077444e-50
MsaG001415	MsaG005148	0.820484	1.173969e-52	2.615291e-50
MsaG001415	MsaG005149	0.830772	4.380684e-55	1.296117e-52
MsaG001415	MsaG005150	0.854018	3.135580e-61	1.956041e-58
MsaG001415	MsaG005205	0.889949	3.365797e-73	9.891662e-70
MsaG001415	MsaG006074	0.836117	2.063972e-56	7.149023e-54
MsaG001415	MsaG006533	0.851878	1.274807e-60	7.373822e-58
MsaG001415	MsaG006601	0.825123	9.875282e-54	2.492516e-51
MsaG001415	MsaG007067	0.818943	2.630057e-52	5.625688e-50
MsaG001415	MsaG007429	0.815234	1.776195e-51	3.453997e-49
MsaG001415	MsaG008047	0.862079	1.291958e-63	1.087603e-60
MsaG001415	MsaG008208	0.822061	5.100384e-53	1.184747e-50
MsaG001415	MsaG008229	0.805615	2.073651e-49	3.189063e-47
MsaG001415	MsaG008426	0.812022	8.973080e-51	1.610057e-48
MsaG001415	MsaG008550	0.812716	6.341541e-51	1.157611e-48
MsaG001415	MsaG008961	0.812863	5.890979e-51	1.079309e-48
MsaG001415	MsaG008967	0.816178	1.096859e-51	2.184626e-49
MsaG001415	MsaG009346	0.824695	1.244670e-53	3.104856e-51
MsaG001415	MsaG011114	0.823556	2.296726e-53	5.554776e-51
MsaG001415	MsaG011115	0.850559	2.992188e-60	1.653259e-57
MsaG001415	MsaG011505	0.828204	1.831216e-54	5.036383e-52
MsaG001415	MsaG012273	0.880853	8.250780e-70	1.549828e-66
MsaG001415	MsaG012326	0.823162	2.836983e-53	6.788263e-51
MsaG001415	MsaG012426	0.852317	9.575716e-61	5.625008e-58
MsaG001415	MsaG012581	0.829960	6.902707e-55	1.995465e-52
MsaG001415	MsaG012933	0.803019	7.158338e-49	1.036585e-46
MsaG001415	MsaG014821	0.804513	3.516257e-49	5.270933e-47
MsaG001415	MsaG017883	0.818334	3.608776e-52	7.597515e-50
MsaG001415	MsaG017976	0.836119	2.060906e-56	7.138998e-54
MsaG001415	MsaG018183	0.857884	2.347970e-62	1.685792e-59
MsaG001415	MsaG018247	0.810414	1.995528e-50	3.442529e-48
MsaG001415	MsaG018343	0.844193	1.645428e-58	7.342293e-56
MsaG001415	MsaG018452	0.845533	7.187451e-59	3.351541e-56
MsaG001415	MsaG019663	0.816585	8.900489e-52	1.791253e-49
MsaG001415	MsaG020314	0.820222	1.346983e-52	2.980126e-50
MsaG001415	MsaG020991	0.830913	4.046434e-55	1.202078e-52
MsaG001415	MsaG021278	0.854990	1.645965e-61	1.062936e-58
MsaG001415	MsaG021279	0.825268	9.127544e-54	2.312997e-51
MsaG001415	MsaG021281	0.807256	9.381430e-50	1.499693e-47
MsaG001415	MsaG021668	0.806981	1.071942e-49	1.702501e-47
MsaG001415	MsaG021896	0.810286	2.126609e-50	3.657019e-48
MsaG001415	MsaG022058	0.840738	1.343143e-57	5.366136e-55
MsaG001415	MsaG022059	0.839934	2.174946e-57	8.472947e-55
MsaG001415	MsaG022438	0.810785	1.660958e-50	2.891285e-48
MsaG001415	MsaG022441	0.825308	8.931324e-54	2.265801e-51
MsaG001415	MsaG022683	0.800411	2.440298e-48	3.330271e-46
MsaG001415	MsaG023089	0.820983	9.027212e-53	2.037784e-50
MsaG001415	MsaG023408	0.843746	2.165463e-58	9.523436e-56
MsaG001415	MsaG023744	0.813265	4.811648e-51	8.904775e-49
MsaG001415	MsaG023914	0.823077	2.968237e-53	7.086404e-51
MsaG001415	MsaG023917	0.877306	1.459134e-68	2.326504e-65
MsaG001415	MsaG023835	0.850257	3.634618e-60	1.987139e-57
MsaG001415	MsaG023837	0.873041	4.107448e-67	5.421136e-64
MsaG001415	MsaG023856	0.861720	1.661778e-63	1.379582e-60
MsaG001415	MsaG023986	0.807673	7.661775e-50	1.237071e-47
MsaG001415	MsaG024025	0.857211	3.706686e-62	2.595461e-59
MsaG001415	MsaG024026	0.875917	4.385314e-68	6.569423e-65
MsaG001415	MsaG026777	0.810433	1.977066e-50	3.412210e-48
MsaG001415	MsaG028872	0.814743	2.279828e-51	4.378593e-49
MsaG001415	MsaG029281	0.824200	1.624875e-53	3.999054e-51
MsaG001415	MsaG029385	0.812193	8.237385e-51	1.484282e-48
MsaG001415	MsaG029340	0.823658	2.174104e-53	5.273027e-51
MsaG001415	MsaG030840	0.836071	2.119086e-56	7.329602e-54
MsaG001415	MsaG031436	0.825391	8.537580e-54	2.170822e-51
MsaG001415	MsaG032386	0.819007	2.542789e-52	5.448184e-50
MsaG001415	MsaG032479	0.808689	4.664086e-50	7.717411e-48
MsaG001415	MsaG032477	0.830017	6.689066e-55	1.936811e-52
MsaG001415	MsaG032998	0.829108	1.109752e-54	3.130668e-52
MsaG001415	MsaG033354	0.834089	6.662669e-56	2.171642e-53
MsaG001415	MsaG033759	0.829046	1.148838e-54	3.235255e-52
MsaG001415	MsaG033782	0.808108	6.196763e-50	1.011063e-47
MsaG001415	MsaG033814	0.840726	1.353448e-57	5.405168e-55
MsaG001415	MsaG034658	0.834856	4.283533e-56	1.428690e-53
MsaG001415	MsaG034659	0.804677	3.251869e-49	4.893116e-47
MsaG001415	MsaG036217	0.813727	3.813140e-51	7.139014e-49
MsaG001415	MsaG037863	0.826622	4.366876e-54	1.148991e-51
MsaG001415	MsaG037869	0.813474	4.331496e-51	8.058294e-49
MsaG001415	MsaG037937	0.853296	5.045879e-61	3.067646e-58
MsaG001415	MsaG039671	0.813106	5.213748e-51	9.610502e-49
MsaG001415	MsaG039962	0.804007	4.476274e-49	6.631994e-47
MsaG001415	MsaG040071	0.807534	8.194493e-50	1.318711e-47
MsaG001415	MsaG040072	0.816554	9.045450e-52	1.818953e-49
MsaG001415	MsaG040262	0.809168	3.687616e-50	6.172210e-48
MsaG001415	MsaG040775	0.832339	1.808911e-55	5.601033e-53
MsaG001415	MsaG040820	0.825092	1.003778e-53	2.531456e-51
MsaG001415	MsaG040823	0.815224	1.785435e-51	3.471053e-49
MsaG001415	MsaG040994	0.801686	1.343253e-48	1.886710e-46
MsaG001415	MsaG041561	0.850633	2.852883e-60	1.580381e-57
MsaG001415	MsaG042086	0.862779	7.890171e-64	6.826970e-61
MsaG001415	MsaG042405	0.810451	1.959688e-50	3.383677e-48
MsaG001415	MsaG042406	0.848039	1.494026e-59	7.576754e-57
MsaG001415	MsaG042454	0.826584	4.459219e-54	1.172040e-51
MsaG001415	MsaG043665	0.806882	1.124898e-49	1.782427e-47
MsaG001415	MsaG044131	0.809213	3.607356e-50	6.044268e-48
MsaG001415	MsaG044352	0.823075	2.970803e-53	7.092264e-51
MsaG001415	MsaG044354	0.811593	1.111782e-50	1.973993e-48
MsaG001415	MsaG044380	0.811035	1.467258e-50	2.569739e-48
MsaG001415	MsaG044794	0.806384	1.431356e-49	2.241617e-47
MsaG001415	MsaG046307	0.826312	5.172248e-54	1.349230e-51
MsaG001415	MsaG046768	0.813332	4.652906e-51	8.625252e-49
MsaG001415	MsaG047138	0.800365	2.493172e-48	3.398849e-46
MsaG001415	MsaG010012	0.816736	8.235608e-52	1.663909e-49
MsaG001415	MsaG013368	0.807481	8.411132e-50	1.351828e-47
MsaG001415	MsaG013262	0.811054	1.453421e-50	2.546698e-48
MsaG001415	MsaG013064	0.836350	1.801199e-56	6.283098e-54
MsaG001415	MsaG013965	0.808367	5.461388e-50	8.966282e-48
MsaG001415	MsaG019037	0.805175	2.561851e-49	3.899807e-47
MsaG001415	MsaG024399	0.853602	4.125708e-61	2.535555e-58
MsaG001415	MsaG032859	0.843624	2.333059e-58	1.022053e-55
MsaG001415	MsaG033509	0.869217	7.406636e-66	8.306029e-63
MsaG001415	MsaG031902	0.854309	2.586434e-61	1.630349e-58
MsaG001415	MsaG031903	0.856188	7.387433e-62	4.983052e-59
MsaG001415	MsaG030523	0.856287	6.912804e-62	4.679993e-59
MsaG001415	MsaG038716	0.842080	5.978622e-58	2.492565e-55
MsaG001415	MsaG037163	0.870556	2.718348e-66	3.223970e-63
MsaG001415	MsaG035298	0.848851	8.929422e-60	4.653601e-57
MsaG001415	MsaG038131	0.832670	1.498864e-55	4.685891e-53
MsaG001415	MsaG039770	0.800796	2.039130e-48	2.807067e-46
MsaG001415	MsaG037526	0.831132	3.578525e-55	1.069782e-52
MsaG001415	MsaG035340	0.804246	3.994376e-49	5.950875e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001415	MtrunA17_Chr1g0163001	81.559	526	11	4	1	441	1	525	0.0	780
MsaG001415	MtrunA17_Chr1g0199101	46.881	561	149	24	1	441	1	532	6.00e-117	352
MsaG001415	MtrunA17_Chr1g0162971	44.118	476	158	19	1	418	1	426	3.09e-94	291
MsaG001415	MtrunA17_Chr1g0210821	51.625	277	78	7	1	221	1	277	5.57e-83	266
MsaG001415	MtrunA17_Chr7g0263941	84.553	123	17	1	54	174	82	204	8.60e-76	242
MsaG001415	MtrunA17_Chr2g0330171	62.105	190	32	3	16	168	22	208	1.04e-74	241
MsaG001415	MtrunA17_Chr4g0040571	87.826	115	14	0	54	168	87	201	5.78e-74	240
MsaG001415	MtrunA17_Chr8g0373541	86.087	115	16	0	54	168	81	195	1.51e-73	239
MsaG001415	MtrunA17_Chr1g0181381	67.456	169	16	4	38	168	34	201	1.13e-72	237
MsaG001415	MtrunA17_Chr7g0268961	83.478	115	19	0	54	168	70	184	3.18e-71	233
MsaG001415	MtrunA17_Chr4g0029521	59.140	186	36	4	40	187	35	218	2.52e-70	230
MsaG001415	MtrunA17_Chr1g0185121	74.453	137	26	2	54	181	88	224	5.52e-70	228
MsaG001415	MtrunA17_Chr1g0191991	83.186	113	19	0	54	166	111	223	1.44e-69	229
MsaG001415	MtrunA17_Chr1g0151351	80.645	124	22	2	54	176	89	211	1.43e-68	224
MsaG001415	MtrunA17_Chr2g0326381	80.172	116	22	1	54	168	80	195	5.23e-66	217
MsaG001415	MtrunA17_Chr3g0141431	70.909	110	31	1	54	162	70	179	3.95e-57	193
MsaG001415	MtrunA17_Chr2g0324991	82.979	94	16	0	54	147	40	133	9.11e-56	181
MsaG001415	MtrunA17_Chr6g0479921	60.185	108	42	1	54	160	77	184	1.66e-42	156
MsaG001415	MtrunA17_Chr8g0375521	60.185	108	41	2	54	159	75	182	4.92e-41	151
MsaG001415	MtrunA17_Chr1g0200421	34.483	116	64	4	55	158	271	386	3.17e-13	71.6
MsaG001415	MtrunA17_Chr5g0422571	40.860	93	49	4	75	163	161	251	5.62e-13	69.3
MsaG001415	MtrunA17_Chr7g0258011	36.634	101	51	4	78	166	237	336	1.10e-12	68.9
MsaG001415	MtrunA17_Chr8g0352011	40.000	85	46	3	78	158	227	310	1.66e-12	68.6
MsaG001415	MtrunA17_Chr1g0173841	40.000	85	46	3	78	158	276	359	2.90e-12	68.2
MsaG001415	MtrunA17_Chr1g0198651	38.462	91	50	4	72	158	161	249	5.06e-12	66.6
MsaG001415	MtrunA17_Chr4g0053341	39.474	76	44	2	84	158	144	218	5.52e-12	65.5
MsaG001415	MtrunA17_Chr2g0328921	38.824	85	47	3	78	158	199	282	7.74e-12	66.2
MsaG001415	MtrunA17_Chr2g0320341	36.364	88	52	2	72	155	291	378	1.14e-11	66.2
MsaG001415	MtrunA17_Chr2g0321291	40.789	76	43	2	84	158	203	277	1.98e-11	64.7
MsaG001415	MtrunA17_Chr4g0026521	39.474	76	44	2	84	158	188	262	2.93e-11	64.3
MsaG001415	MtrunA17_Chr3g0123941	40.000	65	38	1	95	158	204	268	6.44e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001415	AT2G02080.1	40.848	448	164	14	41	404	52	482	7.83e-85	269
MsaG001415	AT2G02080.4	40.848	448	164	14	41	404	52	482	7.83e-85	269
MsaG001415	AT2G02080.5	40.848	448	164	14	41	404	52	482	7.83e-85	269
MsaG001415	AT2G02080.3	40.848	448	164	14	41	404	52	482	7.83e-85	269
MsaG001415	AT2G02080.6	43.216	398	162	12	54	404	25	405	4.53e-84	265
MsaG001415	AT2G02080.2	43.216	398	162	12	54	404	25	405	4.53e-84	265
MsaG001415	AT1G14580.1	40.919	457	173	13	2	401	20	436	8.67e-82	260
MsaG001415	AT1G14580.2	40.919	457	173	13	2	401	20	436	8.67e-82	260
MsaG001415	AT1G14580.3	40.919	457	173	13	2	401	34	450	9.57e-82	260
MsaG001415	AT2G02070.2	74.194	155	29	1	54	197	100	254	1.03e-78	256
MsaG001415	AT2G02070.1	74.194	155	29	1	54	197	100	254	1.03e-78	256
MsaG001415	AT3G50700.1	88.696	115	13	0	54	168	82	196	1.22e-74	241
MsaG001415	AT3G45260.2	84.874	119	17	1	54	171	87	205	8.61e-71	231
MsaG001415	AT3G45260.1	84.874	119	17	1	54	171	87	205	8.61e-71	231
MsaG001415	AT1G03840.2	83.478	115	19	0	54	168	87	201	1.15e-70	232
MsaG001415	AT1G55110.3	61.780	191	23	5	19	168	45	226	1.17e-70	231
MsaG001415	AT1G55110.1	61.780	191	23	5	19	168	45	226	1.17e-70	231
MsaG001415	AT1G55110.2	61.780	191	23	5	19	168	45	226	1.17e-70	231
MsaG001415	AT1G03840.1	83.478	115	19	0	54	168	89	203	1.42e-70	232
MsaG001415	AT5G66730.1	83.621	116	19	0	54	169	80	195	1.48e-70	231
MsaG001415	AT3G13810.6	67.273	165	16	3	42	168	50	214	2.15e-69	228
MsaG001415	AT3G13810.4	67.273	165	16	3	42	168	69	233	2.28e-69	229
MsaG001415	AT3G13810.1	67.273	165	16	3	42	168	69	233	2.28e-69	229
MsaG001415	AT3G13810.5	67.273	165	16	3	42	168	64	228	2.58e-69	228
MsaG001415	AT5G03150.1	61.497	187	28	5	43	189	53	235	3.85e-69	228
MsaG001415	AT3G13810.3	66.258	163	53	2	7	168	59	220	6.84e-69	227
MsaG001415	AT5G44160.2	77.953	127	26	1	54	178	46	172	8.93e-69	225
MsaG001415	AT3G13810.2	66.258	163	53	2	7	168	73	234	9.02e-69	227
MsaG001415	AT5G60470.1	77.600	125	27	1	54	177	83	207	1.85e-68	224
MsaG001415	AT5G44160.1	77.953	127	26	1	54	178	85	211	2.04e-68	225
MsaG001415	AT5G60470.2	76.984	126	28	1	54	178	92	217	6.93e-68	223
MsaG001415	AT5G60470.3	76.984	126	28	1	54	178	88	213	8.53e-68	223
MsaG001415	AT4G02670.1	82.759	116	19	1	54	168	101	216	1.03e-66	219
MsaG001415	AT4G02670.2	82.759	116	19	1	54	168	103	218	1.04e-66	219
MsaG001415	AT1G68130.2	54.074	135	52	3	54	178	3	137	5.73e-44	157
MsaG001415	AT2G01940.2	63.636	110	38	2	54	161	3	112	1.30e-43	157
MsaG001415	AT1G68130.1	62.963	108	38	2	54	159	89	196	2.92e-43	157
MsaG001415	AT1G25250.2	61.468	109	39	2	54	159	3	111	3.29e-43	154
MsaG001415	AT2G01940.1	63.636	110	38	2	54	161	92	201	4.61e-43	157
MsaG001415	AT1G25250.1	61.468	109	39	2	54	159	58	166	8.04e-43	154
MsaG001415	AT1G25250.3	61.468	109	39	2	54	159	81	189	9.61e-43	155
MsaG001415	AT2G01940.3	62.162	111	39	3	54	161	92	202	1.26e-39	148
MsaG001415	AT3G20880.1	33.962	106	59	4	78	173	304	408	2.26e-12	68.9
MsaG001415	AT1G51220.1	37.209	86	49	3	77	158	225	309	6.55e-12	67.0
MsaG001415	AT1G34370.2	33.051	118	65	3	55	158	264	381	6.61e-12	67.8
MsaG001415	AT1G34370.1	33.051	118	65	3	55	158	264	381	6.61e-12	67.8
MsaG001415	AT1G34370.3	37.079	89	52	2	74	158	83	171	9.28e-12	65.9
MsaG001415	AT3G57670.1	38.824	85	47	3	78	158	265	348	1.25e-11	66.6
MsaG001415	AT1G13290.1	39.362	94	50	5	75	163	148	239	1.75e-11	65.5
MsaG001415	AT5G22890.1	33.673	98	61	2	65	158	257	354	2.76e-11	65.5
MsaG001415	AT1G08290.1	39.773	88	47	4	75	158	227	312	4.65e-11	64.3

Find 82 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCTTGTGTTGATTCCAATTT+AGG	0.091214	1:+19790613	None:intergenic
CTCCTTGTTGGGTGCTTATC+TGG	0.106073	1:+19791469	None:intergenic
ATTAAATGATGTTCATATTT+TGG	0.212431	1:+19791402	None:intergenic
GGAAAGAAGCTTAGGTTAAA+AGG	0.236965	1:+19791153	None:intergenic
TCCATTGTTGATCTTCAAAA+AGG	0.237827	1:+19790583	None:intergenic
TTCATCATCTACACCTTTCT+TGG	0.248087	1:-19795581	MsaT001415.1:CDS
CACAAATAAACCTTTCTCTT+TGG	0.255380	1:+19794824	None:intergenic
GAACAACATGGATCCTAAAT+TGG	0.267054	1:-19790626	MsaT001415.1:CDS
GCTTAATATGTTATTGTTTG+TGG	0.314076	1:+19791446	None:intergenic
AGGTACTTGCATGGTGTTCC+AGG	0.328858	1:+19795448	None:intergenic
GTGTTGTTACCATTGGTATT+TGG	0.331507	1:+19791132	None:intergenic
CTAGTTGGTAATTTGTGCTT+TGG	0.354162	1:-19790769	MsaT001415.1:CDS
TCTTGTTGGAAAGTTTGATT+TGG	0.356828	1:+19791288	None:intergenic
TCCACAAACCACATGAGTTT+AGG	0.377863	1:-19791498	MsaT001415.1:CDS
TCCTTGTTGGGTGCTTATCT+GGG	0.390257	1:+19791470	None:intergenic
GTGATAGTTTCATCACTCAT+AGG	0.391861	1:-19791596	MsaT001415.1:CDS
GTTGGTAATTTGTGCTTTGG+AGG	0.397322	1:-19790766	MsaT001415.1:CDS
TATTGTTTGTGGCTCCTTGT+TGG	0.399572	1:+19791457	None:intergenic
TGGTGAACACATGTTGGTTC+TGG	0.406411	1:+19794800	None:intergenic
TTAGTATTTCCTTGAAGATC+AGG	0.406663	1:+19791204	None:intergenic
ATGCAACTTCCTGATCTTCA+AGG	0.407756	1:-19791213	MsaT001415.1:CDS
ATTCTAAGACTTGTGGTACT+AGG	0.408246	1:-19794649	MsaT001415.1:CDS
ATTGTTTGTGGCTCCTTGTT+GGG	0.414354	1:+19791458	None:intergenic
AGGATCAGATAAATTGACTT+TGG	0.426316	1:-19790746	MsaT001415.1:CDS
AATATGCTGTTCAATCTGAT+TGG	0.427517	1:-19794679	MsaT001415.1:CDS
CATGGATTGATGAACTCTCT+TGG	0.436092	1:-19790886	MsaT001415.1:CDS
GTCCTTGATGAAGATCTTGT+TGG	0.437777	1:+19791274	None:intergenic
ACCTAAACTCATGTGGTTTG+TGG	0.441992	1:+19791497	None:intergenic
TGGTATTTGGAAAGAAGCTT+AGG	0.442631	1:+19791145	None:intergenic
GTGTTCACCATGACCCTTCA+AGG	0.444680	1:-19794787	MsaT001415.1:CDS
CATGTTGTTCATTGCACTCA+TGG	0.444733	1:+19790639	None:intergenic
CATGACCCTTCAAGGGCTCT+TGG	0.457066	1:-19794779	MsaT001415.1:CDS
CCCTTCCAACATGAACCCTT+TGG	0.462526	1:-19791535	MsaT001415.1:CDS
ATGGATTGATGAACTCTCTT+GGG	0.462791	1:-19790885	MsaT001415.1:CDS
TCTTGTCTGATTTCCAAGAA+AGG	0.471370	1:+19795568	None:intergenic
AGGGCTCTTGGTGACCTCAC+TGG	0.481216	1:-19794767	MsaT001415.1:CDS
GCCAAAGGGTTCATGTTGGA+AGG	0.499818	1:+19791534	None:intergenic
GAAGAGGACACAATTTGCCT+TGG	0.500777	1:-19794874	MsaT001415.1:CDS
ATGCATTGTGTTGTTACCAT+TGG	0.504019	1:+19791125	None:intergenic
TAACAAAGAGCCAAAGAGAA+AGG	0.517289	1:-19794834	MsaT001415.1:CDS
TTGATGAACTCTCTTGGGAA+TGG	0.517690	1:-19790880	MsaT001415.1:CDS
GATGATGATGATTGATGTAA+AGG	0.518086	1:+19791375	None:intergenic
TTCTAAGACTTGTGGTACTA+GGG	0.522062	1:-19794648	MsaT001415.1:CDS
TAACAACACAACTTCTTCAT+CGG	0.529251	1:-19791181	MsaT001415.1:CDS
AAACAACTTCATCTTCATCA+TGG	0.542991	1:-19791240	MsaT001415.1:CDS
AATATGAGTAGTACAAGTGG+TGG	0.548357	1:-19790694	MsaT001415.1:CDS
TTCCAACAAGATCTTCATCA+AGG	0.551382	1:-19791276	MsaT001415.1:CDS
ATGAGTAGTACAAGTGGTGG+AGG	0.553893	1:-19790691	MsaT001415.1:CDS
AGAAATATGAGTAGTACAAG+TGG	0.564697	1:-19790697	MsaT001415.1:CDS
AGCTTCTTTCCAAATACCAA+TGG	0.568397	1:-19791141	MsaT001415.1:CDS
TGGTCAATTTCACAATGTTG+AGG	0.569576	1:-19790827	MsaT001415.1:CDS
CATCATCCTCATCAACATGA+AGG	0.570900	1:-19791075	MsaT001415.1:intron
CAAGAGCCCTTGAAGGGTCA+TGG	0.571189	1:+19794780	None:intergenic
TGATAGTTTCATCACTCATA+GGG	0.573616	1:-19791595	MsaT001415.1:CDS
TTTGGATCAGTGATGAAGAA+AGG	0.573682	1:+19791306	None:intergenic
TCGTCGCAACAAAGTCTAGT+TGG	0.578172	1:-19790784	MsaT001415.1:CDS
ATATATGATAATAACAACCT+TGG	0.580950	1:-19790847	MsaT001415.1:CDS
AACAATAACATATTAAGCCT+AGG	0.581086	1:-19791441	MsaT001415.1:CDS
ACTAGACTTTGTTGCGACGA+TGG	0.581371	1:+19790787	None:intergenic
CCAAAGGGTTCATGTTGGAA+GGG	0.582486	1:+19791535	None:intergenic
AAAATAGATGAGTTGCCAAA+GGG	0.582651	1:+19791520	None:intergenic
AGGTCACCAAGAGCCCTTGA+AGG	0.583044	1:+19794773	None:intergenic
TCAATTTCACAATGTTGAGG+AGG	0.590636	1:-19790824	MsaT001415.1:CDS
GAAAATAGATGAGTTGCCAA+AGG	0.595195	1:+19791519	None:intergenic
GTGTACAAGGAATATTACCT+AGG	0.598064	1:+19791424	None:intergenic
AATGCATAAAGGTACTTGCA+TGG	0.607082	1:+19795439	None:intergenic
GATCAACATCAACATCTACA+TGG	0.612377	1:-19790904	MsaT001415.1:CDS
AAAGCTCATTCTAAGACTTG+TGG	0.613886	1:-19794656	MsaT001415.1:CDS
AGTTGCCAAAGGGTTCATGT+TGG	0.620508	1:+19791530	None:intergenic
TGTTCACCATGACCCTTCAA+GGG	0.621698	1:-19794786	MsaT001415.1:CDS
CCTAAATTGGAATCAACACA+AGG	0.622024	1:-19790613	MsaT001415.1:CDS
CAACATTGTGAAATTGACCA+AGG	0.623196	1:+19790830	None:intergenic
ATCAGTGATGAAGAAAGGTG+AGG	0.628094	1:+19791311	None:intergenic
TCCCAGATAAGCACCCAACA+AGG	0.630821	1:-19791471	MsaT001415.1:CDS
CATGAGTGCAATGAACAACA+TGG	0.631457	1:-19790638	MsaT001415.1:CDS
AGCAGTTGATGAAGCATCTG+TGG	0.636040	1:+19795510	None:intergenic
ACTGTGGTACTCTCTTCTCA+AGG	0.636169	1:-19794613	MsaT001415.1:intron
GGTCACCAAGAGCCCTTGAA+GGG	0.641915	1:+19794774	None:intergenic
GGGATAGACCTAAACTCATG+TGG	0.647071	1:+19791490	None:intergenic
GGGTCATGGTGAACACATGT+TGG	0.698022	1:+19794794	None:intergenic
AGTGCTTCTTAATTCCAGTG+AGG	0.713073	1:+19794753	None:intergenic
AGGGAGTATAGATGTGACTG+TGG	0.716730	1:-19794629	MsaT001415.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	19790597	19795614	19790597	ID=MsaG001415
Chr1	mRNA	19790597	19795614	19790597	ID=MsaT001415.1;Parent=MsaG001415
Chr1	exon	19790597	19790934	19790597	ID=MsaT001415.1.exon4;Parent=MsaT001415.1
Chr1	CDS	19790597	19790934	19790597	ID=cds.MsaT001415.1;Parent=MsaT001415.1
Chr1	exon	19791076	19791620	19791076	ID=MsaT001415.1.exon3;Parent=MsaT001415.1
Chr1	CDS	19791076	19791620	19791076	ID=cds.MsaT001415.1;Parent=MsaT001415.1
Chr1	exon	19794614	19794895	19794614	ID=MsaT001415.1.exon2;Parent=MsaT001415.1
Chr1	CDS	19794614	19794895	19794614	ID=cds.MsaT001415.1;Parent=MsaT001415.1
Chr1	exon	19795454	19795614	19795454	ID=MsaT001415.1.exon1;Parent=MsaT001415.1
Chr1	CDS	19795454	19795614	19795454	ID=cds.MsaT001415.1;Parent=MsaT001415.1

Gene Sequence

>MsaT001415.1

ATGGCTGCTGCTTCATCATCTACACCTTTCTTGGAAATCAGACAAGAAAATCAAAGTCAGATTACACAACAACATCAATCTTCCACAGATGCTTCATCAACTGCTGCTCAACCTTTAGTTCCTCAGAAAAAAAGAAGAAATCAACCTGGAACACCATGCAAAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCAGAACCAACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGAATTAAGAAGCACTTTTCTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAGGGAGTATAGATGTGACTGTGGTACTCTCTTCTCAAGGCGTGATAGTTTCATCACTCATAGGGCATTTTGTGATGCACTAGCACATGAAAATGCACGACACCCTTCCAACATGAACCCTTTGGCAACTCATCTATTTTCCACAAACCACATGAGTTTAGGTCTATCCCAGATAAGCACCCAACAAGGAGCCACAAACAATAACATATTAAGCCTAGGTAATATTCCTTGTACACCAAAATATGAACATCATTTAATCTCACCTTTACATCAATCATCATCATCATCATTTGGTCAACAACAACAACAACAACAATCAATGTCTTCCTCACCTTTCTTCATCACTGATCCAAATCAAACTTTCCAACAAGATCTTCATCAAGGACAATTCTCAAACAAACAACTTCATCTTCATCATGGTCTCATGCAACTTCCTGATCTTCAAGGAAATACTAATAACAACACAACTTCTTCATCGGTATCGCCTTTTAACCTAAGCTTCTTTCCAAATACCAATGGTAACAACACAATGCATGATCAATTCAACAACATAAGTGAATCTCATCATCCTCATCAACATGAAGAATCTGATGATCAACATCAACATCTACATGGATTGATGAACTCTCTTGGGAATGGAAACACTTCAATATATGATAATAACAACCTTGGTCAATTTCACAATGTTGAGGAGGAGAATAAAAAGATGCCATCGTCGCAACAAAGTCTAGTTGGTAATTTGTGCTTTGGAGGATCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAATATGAGTAGTACAAGTGGTGGAGGATTTTCACAAAGAGAGCAGCAACTACACTCCATGAGTGCAATGAACAACATGGATCCTAAATTGGAATCAACACAAGGAAATCAACCTTTTTGA

Protein sequence

>MsaT001415.1

MAAASSSTPFLEIRQENQSQITQQHQSSTDASSTAAQPLVPQKKRRNQPGTPCKRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTNHMSLGLSQISTQQGATNNNILSLGNIPCTPKYEHHLISPLHQSSSSSFGQQQQQQQSMSSSPFFITDPNQTFQQDLHQGQFSNKQLHLHHGLMQLPDLQGNTNNNTTSSSVSPFNLSFFPNTNGNNTMHDQFNNISESHHPHQHEESDDQHQHLHGLMNSLGNGNTSIYDNNNLGQFHNVEEENKKMPSSQQSLVGNLCFGGSDKLTLDFLGVGGMVRNMSSTSGGGFSQREQQLHSMSAMNNMDPKLESTQGNQPF*