Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001431 | RHN52051.1 | 74.899 | 247 | 56 | 4 | 353 | 596 | 2 | 245 | 1.01e-123 | 375 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001431 | sp|Q9SJ20|RIR1_ARATH | 45.602 | 432 | 105 | 14 | 43 | 359 | 5 | 421 | 4.69e-86 | 288 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001431 | tr|A0A396HHP9|A0A396HHP9_MEDTR | 74.899 | 247 | 56 | 4 | 353 | 596 | 2 | 245 | 4.82e-124 | 375 |
Gene ID | Type | Classification |
---|---|---|
MsaG001431 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG001431 | MsaG013402 | 0.872687 | 5.391622e-67 | 7.006935e-64 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001431 | MtrunA17_Chr6g0476171 | 74.899 | 247 | 56 | 4 | 353 | 596 | 2 | 245 | 9.28e-128 | 375 |
MsaG001431 | MtrunA17_Chr8g0383631 | 87.821 | 156 | 13 | 2 | 136 | 285 | 206 | 361 | 9.81e-86 | 284 |
MsaG001431 | MtrunA17_Chr8g0383631 | 59.091 | 132 | 7 | 3 | 43 | 128 | 5 | 135 | 2.48e-30 | 126 |
MsaG001431 | MtrunA17_Chr3g0079701 | 85.897 | 156 | 16 | 2 | 136 | 285 | 195 | 350 | 3.12e-83 | 277 |
MsaG001431 | MtrunA17_Chr3g0079701 | 59.664 | 119 | 14 | 2 | 44 | 128 | 6 | 124 | 3.10e-28 | 120 |
MsaG001431 | MtrunA17_Chr1g0163151 | 39.091 | 220 | 126 | 6 | 377 | 596 | 10 | 221 | 1.52e-40 | 147 |
MsaG001431 | MtrunA17_Chr1g0163111 | 39.556 | 225 | 118 | 9 | 382 | 596 | 12 | 228 | 1.14e-39 | 145 |
MsaG001431 | MtrunA17_Chr1g0163201 | 40.654 | 214 | 119 | 6 | 382 | 595 | 186 | 391 | 1.73e-39 | 149 |
MsaG001431 | MtrunA17_Chr1g0163181 | 34.137 | 249 | 127 | 8 | 377 | 596 | 189 | 429 | 6.90e-33 | 131 |
MsaG001431 | MtrunA17_Chr1g0162151 | 37.327 | 217 | 97 | 8 | 385 | 595 | 23 | 206 | 3.67e-32 | 123 |
MsaG001431 | MtrunA17_Chr1g0163091 | 41.040 | 173 | 89 | 8 | 361 | 532 | 4 | 164 | 1.44e-25 | 103 |
MsaG001431 | MtrunA17_Chr1g0163261 | 43.357 | 143 | 73 | 6 | 357 | 496 | 157 | 294 | 1.03e-22 | 99.0 |
MsaG001431 | MtrunA17_Chr1g0163251 | 44.348 | 115 | 60 | 4 | 382 | 496 | 181 | 291 | 5.40e-19 | 89.4 |
MsaG001431 | MtrunA17_Chr1g0163131 | 44.318 | 88 | 47 | 1 | 509 | 596 | 221 | 306 | 2.55e-15 | 77.4 |
MsaG001431 | MtrunA17_Chr1g0171611 | 43.269 | 104 | 55 | 3 | 382 | 483 | 164 | 265 | 3.17e-14 | 73.6 |
MsaG001431 | MtrunA17_Chr1g0163231 | 40.000 | 130 | 67 | 5 | 357 | 483 | 156 | 277 | 3.41e-14 | 73.6 |
MsaG001431 | MtrunA17_Chr5g0419211 | 37.500 | 96 | 54 | 2 | 403 | 496 | 10 | 101 | 4.48e-14 | 68.9 |
MsaG001431 | MtrunA17_Chr3g0103161 | 33.663 | 101 | 59 | 3 | 384 | 483 | 29 | 122 | 6.07e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001431 | AT2G21790.1 | 45.602 | 432 | 105 | 14 | 43 | 359 | 5 | 421 | 4.77e-87 | 288 |
Find 130 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGGTGCCTGATCTCTTTA+TGG | 0.175397 | 1:+20052033 | MsaT001431.1:CDS |
TCCCATTCGAAAACTTATTC+TGG | 0.233504 | 1:-20055316 | None:intergenic |
TATAATGAACATCTCGACTA+TGG | 0.280428 | 1:+20057386 | MsaT001431.1:CDS |
TGCTGATATAGTTGACTTCT+TGG | 0.294833 | 1:+20051952 | MsaT001431.1:CDS |
ATTGTTTGCTCAGGTATTAC+TGG | 0.308796 | 1:+20052454 | MsaT001431.1:intron |
TACGTGCCCATGGTTACATT+TGG | 0.313598 | 1:+20051819 | MsaT001431.1:CDS |
TACTGCAGATTCTGTAAGTC+TGG | 0.316891 | 1:+20057134 | MsaT001431.1:intron |
ACGTGCCCATGGTTACATTT+GGG | 0.323530 | 1:+20051820 | MsaT001431.1:CDS |
CTCCGGGCCCGGTTCCTTTG+TGG | 0.341042 | 1:-20055448 | None:intergenic |
TGAAACAGATGATACCTAAA+TGG | 0.345354 | 1:+20055190 | MsaT001431.1:intron |
TTATCACCTTCAACATGATA+TGG | 0.351084 | 1:-20054786 | None:intergenic |
AGCAGCCAAGGATGCATAAT+CGG | 0.351842 | 1:-20051331 | None:intergenic |
AAGAAGCATGGTATATTTAG+TGG | 0.374789 | 1:+20057311 | MsaT001431.1:CDS |
TTGACCCCAACAATCTCATT+GGG | 0.398282 | 1:-20052094 | None:intergenic |
TCTGCCCCAATGAGATTGTT+GGG | 0.399972 | 1:+20052089 | MsaT001431.1:CDS |
GGTTACATTTGGGGAACAAA+TGG | 0.400707 | 1:+20051830 | MsaT001431.1:CDS |
CTTGACCCCAACAATCTCAT+TGG | 0.402730 | 1:-20052095 | None:intergenic |
CATCTCAACCACAAAGGAAC+CGG | 0.404419 | 1:+20055440 | MsaT001431.1:CDS |
TTCTGCCCCAATGAGATTGT+TGG | 0.411432 | 1:+20052088 | MsaT001431.1:CDS |
CATCAAGAATGCGGCTCGAT+TGG | 0.412162 | 1:+20051452 | MsaT001431.1:CDS |
GGAACAAATGGAACGTCTAA+TGG | 0.432244 | 1:+20051842 | MsaT001431.1:CDS |
TGGAAAGAGTTCAGAGCAAT+GGG | 0.432615 | 1:+20052053 | MsaT001431.1:CDS |
CCTTGAAACTTCTCCGGGCC+CGG | 0.437013 | 1:-20055459 | None:intergenic |
GCAGCCAAGGATGCATAATC+GGG | 0.439835 | 1:-20051330 | None:intergenic |
ATTCAGTGGAGTTGAGAGTA+GGG | 0.448522 | 1:+20057336 | MsaT001431.1:CDS |
CTTCTTAGTGTGCATGAAAG+AGG | 0.451624 | 1:+20051709 | MsaT001431.1:CDS |
AGTAAATCTGCTGGAGGGAT+TGG | 0.455606 | 1:+20051779 | MsaT001431.1:CDS |
TTATTGCCATATCATGTTGA+AGG | 0.460335 | 1:+20054780 | MsaT001431.1:CDS |
GCAATACCTTGAAACTTCTC+CGG | 0.461040 | 1:-20055465 | None:intergenic |
TGCTTCTTCAACAGCTCACT+TGG | 0.461685 | 1:-20057296 | None:intergenic |
AACCACAAAGGAACCGGGCC+CGG | 0.463990 | 1:+20055446 | MsaT001431.1:CDS |
CCACCCCGATTATGCATCCT+TGG | 0.465793 | 1:+20051326 | MsaT001431.1:CDS |
GGGGATTTATGATACATTGA+AGG | 0.466284 | 1:+20051742 | MsaT001431.1:CDS |
ATTATGCATCCTTGGCTGCT+AGG | 0.472580 | 1:+20051334 | MsaT001431.1:CDS |
CAACTACTCAAGTGAGGCCT+AGG | 0.473485 | 1:-20051686 | None:intergenic |
GGGTTTACATGAGATGTTCA+AGG | 0.483513 | 1:+20057155 | MsaT001431.1:CDS |
TGAGAGTAGGGGAAGGAACA+TGG | 0.483751 | 1:+20057348 | MsaT001431.1:CDS |
TTATCGCCATGTCATGTTGA+AGG | 0.488274 | 1:+20053527 | MsaT001431.1:CDS |
ATGAAAGAGGATAGTATTGA+GGG | 0.496212 | 1:+20051722 | MsaT001431.1:CDS |
GATAGGGAGTGTATTGAACT+TGG | 0.501036 | 1:+20052493 | MsaT001431.1:CDS |
GCAACGGCGGCATTTACAAT+GGG | 0.504133 | 1:+20050701 | MsaT001431.1:CDS |
GGCAACGGCGGCATTTACAA+TGG | 0.504266 | 1:+20050700 | MsaT001431.1:CDS |
GGCGGCATTTACAATGGGCG+TGG | 0.506008 | 1:+20050706 | MsaT001431.1:CDS |
AGTGAAGCTAGGGTTCTCAT+TGG | 0.506413 | 1:-20054751 | None:intergenic |
GACTATGGGTGGTTCACTAA+AGG | 0.507216 | 1:+20057401 | MsaT001431.1:CDS |
AGTGAAACTAGGACTCTCAT+TGG | 0.512039 | 1:-20053498 | None:intergenic |
ATGGAAAGAGTTCAGAGCAA+TGG | 0.512042 | 1:+20052052 | MsaT001431.1:CDS |
CGTGCCCATGGTTACATTTG+GGG | 0.512128 | 1:+20051821 | MsaT001431.1:CDS |
CATGAAAGAGGATAGTATTG+AGG | 0.513073 | 1:+20051721 | MsaT001431.1:CDS |
TGCATAATCGGGGTGGTTAG+CGG | 0.515425 | 1:-20051319 | None:intergenic |
AGAGATTGCAAAGTAAAGAC+TGG | 0.515563 | 1:+20057440 | MsaT001431.1:CDS |
ACTGCAGATTCTGTAAGTCT+GGG | 0.516733 | 1:+20057135 | MsaT001431.1:intron |
ACTCTTTCCATAAAGAGATC+AGG | 0.516899 | 1:-20052040 | None:intergenic |
AATTCAGTGGAGTTGAGAGT+AGG | 0.518002 | 1:+20057335 | MsaT001431.1:CDS |
TAATGGAAACACAGGAGGCA+TGG | 0.520474 | 1:+20053418 | MsaT001431.1:CDS |
AATAATATGAGAGTGAAGCT+AGG | 0.520491 | 1:-20054762 | None:intergenic |
TGTTGAAGGTGATAATAGAT+TGG | 0.520882 | 1:+20054794 | MsaT001431.1:CDS |
TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1:+20057490 | MsaT001431.1:CDS |
TATCAGCATGCCATGGCTCC+AGG | 0.523661 | 1:-20051937 | None:intergenic |
CCGGGCCCGGAGAAGTTTCA+AGG | 0.523708 | 1:+20055459 | MsaT001431.1:CDS |
GTGAAGCTAGGGTTCTCATT+GGG | 0.527042 | 1:-20054750 | None:intergenic |
TGATTGAACACACGCAGCAT+TGG | 0.527196 | 1:-20051872 | None:intergenic |
TAGGCTCAAGAGAGACGGTC+TGG | 0.528667 | 1:+20051130 | MsaT001431.1:intron |
TTCAGTGGAGTTGAGAGTAG+GGG | 0.529294 | 1:+20057337 | MsaT001431.1:CDS |
CAATACCTTGAAACTTCTCC+GGG | 0.531230 | 1:-20055464 | None:intergenic |
GGGGTGGTTAGCGGTCATAC+AGG | 0.532625 | 1:-20051310 | None:intergenic |
AAGGCAACAATTAGAAGTGT+TGG | 0.542696 | 1:+20055249 | MsaT001431.1:CDS |
AATGGAAACACAGGAGGCAT+GGG | 0.543418 | 1:+20053419 | MsaT001431.1:CDS |
TACATGAATGAGTTATTGCA+AGG | 0.543984 | 1:+20055225 | MsaT001431.1:CDS |
GTGAAACTAGGACTCTCATT+GGG | 0.547777 | 1:-20053497 | None:intergenic |
ATAATGAACATCTCGACTAT+GGG | 0.547880 | 1:+20057387 | MsaT001431.1:CDS |
TATATTTAGTGGAAATTCAG+TGG | 0.549056 | 1:+20057322 | MsaT001431.1:CDS |
TTGCTGTGTACCTGGAGCCA+TGG | 0.549073 | 1:+20051927 | MsaT001431.1:CDS |
TTGAAGCTCGCGTTGTTGAA+CGG | 0.558036 | 1:-20050761 | None:intergenic |
ATGGGTGGTTCACTAAAGGC+TGG | 0.558556 | 1:+20057405 | MsaT001431.1:CDS |
GCTGTCATTAGTAAATCTGC+TGG | 0.558625 | 1:+20051770 | MsaT001431.1:CDS |
TTGTTCCCCAAATGTAACCA+TGG | 0.559225 | 1:-20051826 | None:intergenic |
AAAGAGATCAGGCACCCAAA+GGG | 0.564159 | 1:-20052029 | None:intergenic |
ATAGCAATCGTGAATGAAAG+TGG | 0.565935 | 1:-20055417 | None:intergenic |
GATAATTTGACAGTGAAACT+AGG | 0.566923 | 1:-20053509 | None:intergenic |
CATACAGGCGGCGGTTTCAG+CGG | 0.568521 | 1:-20051295 | None:intergenic |
AATTAGAAGTGTTGGTGAGG+AGG | 0.570785 | 1:+20055257 | MsaT001431.1:CDS |
CTAATGAAAACAGAGGAGGC+AGG | 0.574849 | 1:+20054670 | MsaT001431.1:CDS |
ATCTCAACCACAAAGGAACC+GGG | 0.574935 | 1:+20055441 | MsaT001431.1:CDS |
GTTCACAACATACGTGCCCA+TGG | 0.585675 | 1:+20051809 | MsaT001431.1:CDS |
TGTTCCCCAAATGTAACCAT+GGG | 0.588262 | 1:-20051825 | None:intergenic |
AACAATTAGAAGTGTTGGTG+AGG | 0.594775 | 1:+20055254 | MsaT001431.1:CDS |
TTCTCCTACACTTTCAACGC+TGG | 0.596342 | 1:+20051659 | MsaT001431.1:CDS |
GCAGAGGCTAATGGAAACAC+AGG | 0.596384 | 1:+20053410 | MsaT001431.1:intron |
ATAATATGAGAGTGAAGCTA+GGG | 0.600162 | 1:-20054761 | None:intergenic |
TAATGAAAACAGAGGAGGCA+GGG | 0.600637 | 1:+20054671 | MsaT001431.1:CDS |
GCGGCATTTACAATGGGCGT+GGG | 0.601464 | 1:+20050707 | MsaT001431.1:CDS |
TGAAATTATCATCAAGAATG+CGG | 0.602682 | 1:+20051443 | MsaT001431.1:CDS |
CACATTAGGCTCAAGAGAGA+CGG | 0.608912 | 1:+20051125 | MsaT001431.1:intron |
TAAAGAGATCAGGCACCCAA+AGG | 0.610062 | 1:-20052030 | None:intergenic |
GAGACGGTCTGGTCGTCAAG+AGG | 0.612558 | 1:+20051141 | MsaT001431.1:CDS |
GTTAGCGGTCATACAGGCGG+CGG | 0.615094 | 1:-20051304 | None:intergenic |
CTGCCCCAATGAGATTGTTG+GGG | 0.615255 | 1:+20052090 | MsaT001431.1:CDS |
AACAGCAATCCTAGCAGCCA+AGG | 0.615588 | 1:-20051343 | None:intergenic |
GTCATTAGTAAATCTGCTGG+AGG | 0.617415 | 1:+20051773 | MsaT001431.1:CDS |
AGTGAGCTGTTGAAGAAGCA+TGG | 0.617628 | 1:+20057299 | MsaT001431.1:CDS |
AATCTCATTGGGGCAGAACA+AGG | 0.622905 | 1:-20052083 | None:intergenic |
CTTTCAACGCTGGAACACCT+AGG | 0.623357 | 1:+20051669 | MsaT001431.1:CDS |
GTGGTTAGCGGTCATACAGG+CGG | 0.624764 | 1:-20051307 | None:intergenic |
GGAAGGAACATGGTTTGTAG+AGG | 0.629163 | 1:+20057358 | MsaT001431.1:CDS |
TGTTCCAGCGTTGAAAGTGT+AGG | 0.629278 | 1:-20051663 | None:intergenic |
GCATGTTATGTTGATCAGAA+AGG | 0.634303 | 1:+20051899 | MsaT001431.1:CDS |
ATGAACATCTCGACTATGGG+TGG | 0.635276 | 1:+20057390 | MsaT001431.1:CDS |
TTTCAACAACAACACGGCAA+CGG | 0.635953 | 1:+20050685 | MsaT001431.1:CDS |
CGGGAACATAACTTGCAAGT+CGG | 0.642213 | 1:+20055360 | MsaT001431.1:CDS |
GAATGAGTTATTGCAAGGGA+AGG | 0.643476 | 1:+20055230 | MsaT001431.1:CDS |
GTGGAGTTGAGAGTAGGGGA+AGG | 0.647557 | 1:+20057341 | MsaT001431.1:CDS |
TGCTATCATCTCAACCACAA+AGG | 0.651551 | 1:+20055434 | MsaT001431.1:CDS |
GCAGAGACTAATGAAAACAG+AGG | 0.657129 | 1:+20054663 | MsaT001431.1:intron |
TTATCACCTTCAACATGACA+TGG | 0.659419 | 1:-20053533 | None:intergenic |
GGGCGTGGGAGTGAAGCTCA+AGG | 0.660198 | 1:+20050721 | MsaT001431.1:CDS |
ACATGAATGAGTTATTGCAA+GGG | 0.661417 | 1:+20055226 | MsaT001431.1:CDS |
CAACAACAACACGGCAACGG+CGG | 0.664470 | 1:+20050688 | MsaT001431.1:CDS |
TCAACTATATCAGCATGCCA+TGG | 0.671085 | 1:-20051944 | None:intergenic |
TCATTAGTAAATCTGCTGGA+GGG | 0.679752 | 1:+20051774 | MsaT001431.1:CDS |
TGACCCCAACAATCTCATTG+GGG | 0.681151 | 1:-20052093 | None:intergenic |
AAGAAGCAACTACTCAAGTG+AGG | 0.683257 | 1:-20051692 | None:intergenic |
CCAAGGATGCATAATCGGGG+TGG | 0.693063 | 1:-20051326 | None:intergenic |
TGAAAGAGGATAGTATTGAG+GGG | 0.695012 | 1:+20051723 | MsaT001431.1:CDS |
GAGGCTAATGGAAACACAGG+AGG | 0.702704 | 1:+20053413 | MsaT001431.1:intron |
GAGACTAATGAAAACAGAGG+AGG | 0.703693 | 1:+20054666 | MsaT001431.1:intron |
ATGTCGTTTCAACAACAACA+CGG | 0.718899 | 1:+20050679 | MsaT001431.1:CDS |
ACATCATCAGCAATCAACAA+CGG | 0.718982 | 1:-20051417 | None:intergenic |
CAGCCAAGGATGCATAATCG+GGG | 0.721826 | 1:-20051329 | None:intergenic |
TTGGTGAGGAGGATAGAACA+TGG | 0.724838 | 1:+20055268 | MsaT001431.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 20050679 | 20057526 | 20050679 | ID=MsaG001431 |
Chr1 | mRNA | 20050679 | 20057526 | 20050679 | ID=MsaT001431.1;Parent=MsaG001431 |
Chr1 | exon | 20050679 | 20050795 | 20050679 | ID=MsaT001431.1.exon1;Parent=MsaT001431.1 |
Chr1 | CDS | 20050679 | 20050795 | 20050679 | ID=cds.MsaT001431.1;Parent=MsaT001431.1 |
Chr1 | exon | 20051133 | 20051191 | 20051133 | ID=MsaT001431.1.exon2;Parent=MsaT001431.1 |
Chr1 | CDS | 20051133 | 20051191 | 20051133 | ID=cds.MsaT001431.1;Parent=MsaT001431.1 |
Chr1 | exon | 20051278 | 20051477 | 20051278 | ID=MsaT001431.1.exon3;Parent=MsaT001431.1 |
Chr1 | CDS | 20051278 | 20051477 | 20051278 | ID=cds.MsaT001431.1;Parent=MsaT001431.1 |
Chr1 | exon | 20051642 | 20052139 | 20051642 | ID=MsaT001431.1.exon4;Parent=MsaT001431.1 |
Chr1 | CDS | 20051642 | 20052139 | 20051642 | ID=cds.MsaT001431.1;Parent=MsaT001431.1 |
Chr1 | exon | 20052467 | 20052514 | 20052467 | ID=MsaT001431.1.exon5;Parent=MsaT001431.1 |
Chr1 | CDS | 20052467 | 20052514 | 20052467 | ID=cds.MsaT001431.1;Parent=MsaT001431.1 |
Chr1 | exon | 20053414 | 20053548 | 20053414 | ID=MsaT001431.1.exon6;Parent=MsaT001431.1 |
Chr1 | CDS | 20053414 | 20053548 | 20053414 | ID=cds.MsaT001431.1;Parent=MsaT001431.1 |
Chr1 | exon | 20054667 | 20054815 | 20054667 | ID=MsaT001431.1.exon7;Parent=MsaT001431.1 |
Chr1 | CDS | 20054667 | 20054815 | 20054667 | ID=cds.MsaT001431.1;Parent=MsaT001431.1 |
Chr1 | exon | 20055198 | 20055480 | 20055198 | ID=MsaT001431.1.exon8;Parent=MsaT001431.1 |
Chr1 | CDS | 20055198 | 20055480 | 20055198 | ID=cds.MsaT001431.1;Parent=MsaT001431.1 |
Chr1 | exon | 20057142 | 20057200 | 20057142 | ID=MsaT001431.1.exon9;Parent=MsaT001431.1 |
Chr1 | CDS | 20057142 | 20057200 | 20057142 | ID=cds.MsaT001431.1;Parent=MsaT001431.1 |
Chr1 | exon | 20057284 | 20057526 | 20057284 | ID=MsaT001431.1.exon10;Parent=MsaT001431.1 |
Chr1 | CDS | 20057284 | 20057526 | 20057284 | ID=cds.MsaT001431.1;Parent=MsaT001431.1 |
Gene Sequence |
Protein sequence |