AlfalfaGEDB | MsaG001432

M. sativa ssp. caerulea / MsaG001432

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001432	XP_039688434.1	65.657	297	93	6	1	293	1	292	4.50e-123	369
MsaG001432	XP_039688434.1	80.000	75	15	0	219	293	355	429	5.18e-30	128

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001432	sp\|Q8L3W1\|VRN1_ARATH	28.313	332	189	15	7	291	4	333	6.00e-23	99.8

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001432	tr\|A0A396JPN4\|A0A396JPN4_MEDTR	65.657	297	93	6	1	293	1	292	2.15e-123	369
MsaG001432	tr\|A0A396JPN4\|A0A396JPN4_MEDTR	80.000	75	15	0	219	293	355	429	2.47e-30	128

TFs/TRs:

Gene ID	Type	Classification
MsaG001432	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000107	MsaG001432	0.811260	1.311722e-50	2.310081e-48
MsaG000115	MsaG001432	0.813315	4.692739e-51	8.695355e-49
MsaG000180	MsaG001432	0.837996	6.867066e-57	2.518168e-54
MsaG000250	MsaG001432	0.838421	5.342316e-57	1.985006e-54
MsaG000419	MsaG001432	0.851189	1.992590e-60	1.125121e-57
MsaG000707	MsaG001432	0.800356	2.503597e-48	3.412383e-46
MsaG000888	MsaG001432	0.813441	4.403211e-51	8.185087e-49
MsaG000941	MsaG001432	0.825390	8.543313e-54	2.172204e-51
MsaG001325	MsaG001432	0.814658	2.380652e-51	4.562375e-49
MsaG001406	MsaG001432	0.824816	1.165406e-53	2.916915e-51
MsaG001432	MsaG002214	0.833453	9.590871e-56	3.068225e-53
MsaG001432	MsaG002911	0.822319	4.445878e-53	1.039932e-50
MsaG001432	MsaG003180	0.829649	8.213956e-55	2.353423e-52
MsaG001432	MsaG003192	0.813898	3.498339e-51	6.577901e-49
MsaG001432	MsaG003466	0.821687	6.219494e-53	1.430372e-50
MsaG001432	MsaG003536	0.811679	1.065130e-50	1.895106e-48
MsaG001432	MsaG003667	0.809298	3.460639e-50	5.810138e-48
MsaG001432	MsaG003679	0.826238	5.386986e-54	1.402328e-51
MsaG001432	MsaG003680	0.824173	1.648509e-53	4.054213e-51
MsaG001432	MsaG003998	0.803180	6.634492e-49	9.642946e-47
MsaG001432	MsaG004092	0.809209	3.614251e-50	6.055219e-48
MsaG001432	MsaG004185	0.837315	1.024821e-56	3.680414e-54
MsaG001432	MsaG004500	0.825511	8.002352e-54	2.041532e-51
MsaG001432	MsaG004534	0.822623	3.782007e-53	8.918959e-51
MsaG001432	MsaG004621	0.808300	5.641398e-50	9.247173e-48
MsaG001432	MsaG004648	0.824420	1.443488e-53	3.574018e-51
MsaG001432	MsaG004684	0.824714	1.231856e-53	3.074510e-51
MsaG001432	MsaG004711	0.801898	1.215405e-48	1.715441e-46
MsaG001432	MsaG005074	0.810126	2.300866e-50	3.941257e-48
MsaG001432	MsaG005354	0.819734	1.739526e-52	3.798713e-50
MsaG001432	MsaG005774	0.805957	1.758424e-49	2.726070e-47
MsaG001432	MsaG005813	0.826828	3.902065e-54	1.032585e-51
MsaG001432	MsaG006020	0.826751	4.069237e-54	1.074565e-51
MsaG001432	MsaG006639	0.800073	2.857520e-48	3.869909e-46
MsaG001432	MsaG006683	0.815737	1.374247e-51	2.706547e-49
MsaG001432	MsaG006741	0.812115	8.564573e-51	1.540247e-48
MsaG001432	MsaG006777	0.801869	1.232261e-48	1.738085e-46
MsaG001432	MsaG006855	0.827830	2.251194e-54	6.126967e-52
MsaG001432	MsaG006873	0.817461	5.670319e-52	1.167210e-49
MsaG001432	MsaG006889	0.805471	2.221693e-49	3.405213e-47
MsaG001432	MsaG006988	0.814679	2.354781e-51	4.515258e-49
MsaG001432	MsaG007215	0.826498	4.672726e-54	1.225292e-51
MsaG001432	MsaG007354	0.830518	5.051170e-55	1.483589e-52
MsaG001432	MsaG007600	0.820364	1.250179e-52	2.776265e-50
MsaG001432	MsaG007684	0.828021	2.025502e-54	5.542297e-52
MsaG001432	MsaG007834	0.806067	1.667878e-49	2.592464e-47
MsaG001432	MsaG008088	0.815729	1.379637e-51	2.716672e-49
MsaG001432	MsaG008126	0.800835	2.001485e-48	2.757639e-46
MsaG001432	MsaG008218	0.833505	9.307926e-56	2.982305e-53
MsaG001432	MsaG008220	0.801132	1.742118e-48	2.416371e-46
MsaG001432	MsaG008237	0.844849	1.097926e-58	5.006291e-56
MsaG001432	MsaG008356	0.820776	1.006769e-52	2.260093e-50
MsaG001432	MsaG008434	0.807910	6.825043e-50	1.108319e-47
MsaG001432	MsaG008525	0.814158	3.066538e-51	5.803556e-49
MsaG001432	MsaG008634	0.815916	1.254209e-51	2.481391e-49
MsaG001432	MsaG009389	0.831640	2.686539e-55	8.151665e-53
MsaG001432	MsaG009477	0.805521	2.169127e-49	3.328504e-47
MsaG001432	MsaG009767	0.806920	1.104279e-49	1.751295e-47
MsaG001432	MsaG009787	0.820425	1.210528e-52	2.692619e-50
MsaG001432	MsaG010104	0.803712	5.151892e-49	7.580872e-47
MsaG001432	MsaG010902	0.818365	3.551805e-52	7.483544e-50
MsaG001432	MsaG011010	0.820779	1.005155e-52	2.256659e-50
MsaG001432	MsaG011018	0.824998	1.056333e-53	2.657063e-51
MsaG001432	MsaG011225	0.818438	3.418745e-52	7.216872e-50
MsaG001432	MsaG011244	0.815894	1.268214e-51	2.507721e-49
MsaG001432	MsaG011217	0.842971	3.476785e-58	1.491533e-55
MsaG001432	MsaG011363	0.804093	4.296793e-49	6.378936e-47
MsaG001432	MsaG011861	0.807974	6.615787e-50	1.075961e-47
MsaG001432	MsaG011774	0.811972	9.199089e-51	1.648614e-48
MsaG001432	MsaG011952	0.804692	3.228077e-49	4.858991e-47
MsaG001432	MsaG012170	0.814610	2.439087e-51	4.668675e-49
MsaG001432	MsaG012586	0.823587	2.258929e-53	5.468016e-51
MsaG001432	MsaG012591	0.836827	1.363571e-56	4.825189e-54
MsaG001432	MsaG015132	0.801471	1.485646e-48	2.076543e-46
MsaG001432	MsaG015184	0.817245	6.340673e-52	1.297981e-49
MsaG001432	MsaG015705	0.808215	5.880515e-50	9.619319e-48
MsaG001432	MsaG015829	0.819778	1.699987e-52	3.716833e-50
MsaG001432	MsaG015851	0.803083	6.946997e-49	1.007453e-46
MsaG001432	MsaG016421	0.842471	4.713855e-58	1.990170e-55
MsaG001432	MsaG016517	0.855609	1.089288e-61	7.194353e-59
MsaG001432	MsaG017303	0.835019	3.900871e-56	1.307411e-53
MsaG001432	MsaG017480	0.847184	2.560889e-59	1.261813e-56
MsaG001432	MsaG017690	0.854149	2.875026e-61	1.801853e-58
MsaG001432	MsaG018598	0.808785	4.450262e-50	7.380403e-48
MsaG001432	MsaG018786	0.806310	1.483534e-49	2.319272e-47
MsaG001432	MsaG019237	0.822058	5.108732e-53	1.186587e-50
MsaG001432	MsaG019356	0.845575	7.000524e-59	3.269071e-56
MsaG001432	MsaG019795	0.804139	4.204150e-49	6.247807e-47
MsaG001432	MsaG019814	0.825542	7.868271e-54	2.009027e-51
MsaG001432	MsaG019913	0.808710	4.617635e-50	7.644346e-48
MsaG001432	MsaG019935	0.833703	8.310868e-56	2.678448e-53
MsaG001432	MsaG020334	0.815040	1.960931e-51	3.794381e-49
MsaG001432	MsaG020338	0.801478	1.480953e-48	2.070303e-46
MsaG001432	MsaG020420	0.843323	2.805456e-58	1.217206e-55
MsaG001432	MsaG020421	0.801127	1.746295e-48	2.421889e-46
MsaG001432	MsaG020467	0.840787	1.304545e-57	5.219899e-55
MsaG001432	MsaG020531	0.808891	4.224908e-50	7.024666e-48
MsaG001432	MsaG020596	0.805144	2.599377e-49	3.954098e-47
MsaG001432	MsaG020787	0.801734	1.313395e-48	1.846773e-46
MsaG001432	MsaG020866	0.821357	7.408454e-53	1.688913e-50
MsaG001432	MsaG021049	0.836903	1.304077e-56	4.625154e-54
MsaG001432	MsaG021200	0.812122	8.537278e-51	1.535580e-48
MsaG001432	MsaG021650	0.811661	1.074533e-50	1.911025e-48
MsaG001432	MsaG021720	0.828404	1.639235e-54	4.533986e-52
MsaG001432	MsaG022547	0.814799	2.215510e-51	4.261180e-49
MsaG001432	MsaG022624	0.815811	1.323643e-51	2.611797e-49
MsaG001432	MsaG022729	0.800401	2.452181e-48	3.345694e-46
MsaG001432	MsaG022993	0.829946	6.957694e-55	2.010553e-52
MsaG001432	MsaG023762	0.828836	1.290482e-54	3.612632e-52
MsaG001432	MsaG023960	0.831311	3.235592e-55	9.722615e-53
MsaG001432	MsaG024008	0.800172	2.727869e-48	3.702505e-46
MsaG001432	MsaG024010	0.828095	1.944362e-54	5.331244e-52
MsaG001432	MsaG024272	0.809251	3.540248e-50	5.937246e-48
MsaG001432	MsaG024958	0.803059	7.026401e-49	1.018399e-46
MsaG001432	MsaG025732	0.833245	1.080231e-55	3.434782e-53
MsaG001432	MsaG026192	0.808398	5.378521e-50	8.836722e-48
MsaG001432	MsaG026841	0.839166	3.436060e-57	1.306699e-54
MsaG001432	MsaG026849	0.810526	1.887896e-50	3.265666e-48
MsaG001432	MsaG026830	0.878222	7.007110e-69	1.165270e-65
MsaG001432	MsaG026831	0.866072	7.466863e-65	7.363688e-62
MsaG001432	MsaG026962	0.833641	8.613671e-56	2.770882e-53
MsaG001432	MsaG027026	0.807307	9.153244e-50	1.464997e-47
MsaG001432	MsaG026985	0.828871	1.266029e-54	3.547710e-52
MsaG001432	MsaG026987	0.806845	1.144978e-49	1.812656e-47
MsaG001432	MsaG027302	0.835938	2.289128e-56	7.886394e-54
MsaG001432	MsaG027395	0.834903	4.170210e-56	1.392817e-53
MsaG001432	MsaG027776	0.808882	4.243470e-50	7.054046e-48
MsaG001432	MsaG027780	0.802403	9.580526e-49	1.367908e-46
MsaG001432	MsaG028040	0.813748	3.772550e-51	7.066853e-49
MsaG001432	MsaG028109	0.806036	1.692982e-49	2.629510e-47
MsaG001432	MsaG028568	0.823869	1.941305e-53	4.735136e-51
MsaG001432	MsaG028825	0.830078	6.463685e-55	1.874830e-52
MsaG001432	MsaG029461	0.814962	2.039838e-51	3.939458e-49
MsaG001432	MsaG029591	0.801492	1.471120e-48	2.057221e-46
MsaG001432	MsaG029801	0.825375	8.613579e-54	2.189201e-51
MsaG001432	MsaG029802	0.804187	4.109913e-49	6.114532e-47
MsaG001432	MsaG029919	0.814768	2.251521e-51	4.327025e-49
MsaG001432	MsaG030045	0.847319	2.353776e-59	1.164983e-56
MsaG001432	MsaG031201	0.820763	1.013660e-52	2.274758e-50
MsaG001432	MsaG032046	0.800998	1.855110e-48	2.565296e-46
MsaG001432	MsaG032064	0.806971	1.077560e-49	1.710984e-47
MsaG001432	MsaG032373	0.806359	1.448351e-49	2.266907e-47
MsaG001432	MsaG032413	0.835856	2.401631e-56	8.253336e-54
MsaG001432	MsaG032636	0.811078	1.435950e-50	2.517591e-48
MsaG001432	MsaG032928	0.822498	4.042625e-53	9.501348e-51
MsaG001432	MsaG033593	0.804863	2.974995e-49	4.495982e-47
MsaG001432	MsaG033815	0.842006	6.253843e-58	2.601211e-55
MsaG001432	MsaG034147	0.851248	1.918733e-60	1.085622e-57
MsaG001432	MsaG034336	0.800368	2.490113e-48	3.394911e-46
MsaG001432	MsaG035162	0.873788	2.310559e-67	3.150741e-64
MsaG001432	MsaG036241	0.817244	6.342491e-52	1.298339e-49
MsaG001432	MsaG036420	0.804085	4.314459e-49	6.403890e-47
MsaG001432	MsaG036974	0.811833	9.863833e-51	1.761686e-48
MsaG001432	MsaG037910	0.806058	1.675466e-49	2.603658e-47
MsaG001432	MsaG038030	0.800641	2.191733e-48	3.006661e-46
MsaG001432	MsaG039166	0.821307	7.606192e-53	1.731746e-50
MsaG001432	MsaG039487	0.823111	2.915151e-53	6.965894e-51
MsaG001432	MsaG039599	0.806256	1.522708e-49	2.377498e-47
MsaG001432	MsaG039921	0.816414	9.717703e-52	1.947133e-49
MsaG001432	MsaG040853	0.805242	2.480690e-49	3.782064e-47
MsaG001432	MsaG042566	0.821344	7.458667e-53	1.699777e-50
MsaG001432	MsaG042679	0.809748	2.773154e-50	4.707038e-48
MsaG001432	MsaG042994	0.801650	1.365687e-48	1.916672e-46
MsaG001432	MsaG043000	0.868507	1.254716e-65	1.366675e-62
MsaG001432	MsaG043804	0.800986	1.865126e-48	2.578496e-46
MsaG001432	MsaG043924	0.805762	1.931746e-49	2.981072e-47
MsaG001432	MsaG044107	0.841129	1.062051e-57	4.295944e-55
MsaG001432	MsaG044278	0.865141	1.463463e-64	1.390514e-61
MsaG001432	MsaG044333	0.815814	1.321472e-51	2.607706e-49
MsaG001432	MsaG044453	0.801576	1.414500e-48	1.981792e-46
MsaG001432	MsaG044516	0.849566	5.661210e-60	3.023512e-57
MsaG001432	MsaG044722	0.824959	1.078807e-53	2.710759e-51
MsaG001432	MsaG044880	0.816068	1.160367e-51	2.304590e-49
MsaG001432	MsaG044889	0.866377	5.983387e-65	5.973674e-62
MsaG001432	MsaG045016	0.855169	1.461350e-61	9.498232e-59
MsaG001432	MsaG045109	0.832371	1.776301e-55	5.505237e-53
MsaG001432	MsaG045118	0.839522	2.779647e-57	1.068907e-54
MsaG001432	MsaG045371	0.814740	2.282873e-51	4.384135e-49
MsaG001432	MsaG045412	0.840726	1.353487e-57	5.405221e-55
MsaG001432	MsaG045769	0.801258	1.641821e-48	2.283759e-46
MsaG001432	MsaG046126	0.817560	5.386696e-52	1.111677e-49
MsaG001432	MsaG046373	0.823446	2.436047e-53	5.874087e-51
MsaG001432	MsaG046472	0.846367	4.273291e-59	2.048767e-56
MsaG001432	MsaG046488	0.821277	7.725242e-53	1.757516e-50
MsaG001432	MsaG046497	0.832842	1.359141e-55	4.270398e-53
MsaG001432	MsaG046730	0.823421	2.468623e-53	5.948758e-51
MsaG001432	MsaG046930	0.834848	4.304522e-56	1.435343e-53
MsaG001432	MsaG046972	0.813182	5.017658e-51	9.266783e-49
MsaG001432	MsaG001564	0.851321	1.829916e-60	1.038004e-57
MsaG001432	MsaG002316	0.879587	2.323951e-69	4.115880e-66
MsaG001432	MsaG003734	0.816055	1.167979e-51	2.318955e-49
MsaG001432	MsaG002984	0.860086	5.186819e-63	4.045990e-60
MsaG001432	MsaG002433	0.825839	6.693096e-54	1.723176e-51
MsaG001432	MsaG002954	0.813922	3.455707e-51	6.501676e-49
MsaG001432	MsaG002307	0.816841	7.805481e-52	1.581208e-49
MsaG001432	MsaG001893	0.807144	9.908257e-50	1.579716e-47
MsaG001432	MsaG008854	0.804175	4.133043e-49	6.147237e-47
MsaG001432	MsaG009209	0.858955	1.130096e-62	8.444893e-60
MsaG001432	MsaG007590	0.800588	2.247105e-48	3.078878e-46
MsaG001432	MsaG007673	0.830607	4.806696e-55	1.415349e-52
MsaG001432	MsaG014164	0.802062	1.125320e-48	1.594172e-46
MsaG001432	MsaG013406	0.816714	8.329424e-52	1.681905e-49
MsaG001432	MsaG013967	0.811655	1.077930e-50	1.916761e-48
MsaG001432	MsaG013252	0.810925	1.549491e-50	2.706408e-48
MsaG001432	MsaG018864	0.809739	2.784562e-50	4.725473e-48
MsaG001432	MsaG017934	0.838727	4.456885e-57	1.671988e-54
MsaG001432	MsaG019407	0.826127	5.723503e-54	1.485403e-51
MsaG001432	MsaG023445	0.845518	7.252192e-59	3.380125e-56
MsaG001432	MsaG017935	0.837610	8.617657e-57	3.122998e-54
MsaG001432	MsaG028734	0.824426	1.439028e-53	3.563580e-51
MsaG001432	MsaG029782	0.858048	2.100532e-62	1.517390e-59
MsaG001432	MsaG027166	0.814853	2.155944e-51	4.152221e-49
MsaG001432	MsaG025855	0.818292	3.688587e-52	7.756967e-50
MsaG001432	MsaG028076	0.804805	3.059012e-49	4.616666e-47
MsaG001432	MsaG032663	0.835441	3.055629e-56	1.037126e-53
MsaG001432	MsaG034613	0.857667	2.722330e-62	1.938732e-59
MsaG001432	MsaG033153	0.802894	7.596410e-49	1.096836e-46
MsaG001432	MsaG032261	0.833495	9.361076e-56	2.998493e-53
MsaG001432	MsaG032935	0.812466	7.186344e-51	1.303748e-48
MsaG001432	MsaG030638	0.816446	9.560470e-52	1.917187e-49
MsaG001432	MsaG031625	0.800181	2.717329e-48	3.688915e-46
MsaG001432	MsaG030688	0.858785	1.269663e-62	9.427623e-60
MsaG001432	MsaG031340	0.838480	5.158620e-57	1.920350e-54
MsaG001432	MsaG031188	0.818993	2.562208e-52	5.487739e-50
MsaG001432	MsaG031025	0.834583	5.015809e-56	1.659320e-53
MsaG001432	MsaG033504	0.835654	2.700173e-56	9.223305e-54
MsaG001432	MsaG035313	0.812761	6.200229e-51	1.133092e-48
MsaG001432	MsaG036651	0.802597	8.741325e-49	1.253622e-46
MsaG001432	MsaG034912	0.833862	7.586964e-56	2.456390e-53
MsaG001432	MsaG042585	0.813521	4.229454e-51	7.877920e-49
MsaG001432	MsaG042698	0.825176	9.592451e-54	2.424718e-51
MsaG001432	MsaG041446	0.809922	2.544775e-50	4.337539e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001432	MtrunA17_Chr1g0163181	65.657	297	93	6	1	293	1	292	4.14e-127	369
MsaG001432	MtrunA17_Chr1g0163181	80.000	75	15	0	219	293	355	429	4.76e-34	128
MsaG001432	MtrunA17_Chr1g0163251	51.163	301	117	4	1	293	1	279	6.38e-98	293
MsaG001432	MtrunA17_Chr1g0163201	59.155	284	89	6	20	293	18	284	1.70e-95	287
MsaG001432	MtrunA17_Chr1g0163201	66.667	105	30	1	189	293	293	392	3.76e-38	139
MsaG001432	MtrunA17_Chr1g0163191	73.373	169	37	2	1	169	1	161	1.58e-75	228
MsaG001432	MtrunA17_Chr1g0163261	37.864	309	149	6	1	293	1	282	1.70e-64	204
MsaG001432	MtrunA17_Chr1g0163241	60.335	179	47	4	1	178	7	162	2.30e-62	194
MsaG001432	MtrunA17_Chr1g0163231	38.889	306	146	9	1	293	1	278	8.39e-62	197
MsaG001432	MtrunA17_Chr1g0171611	38.889	306	134	8	1	293	1	266	2.15e-59	191
MsaG001432	MtrunA17_Chr1g0163131	41.438	292	147	9	14	293	27	306	2.79e-57	186
MsaG001432	MtrunA17_Chr1g0163111	81.818	77	14	0	217	293	152	228	9.36e-38	133
MsaG001432	MtrunA17_Chr1g0163111	42.478	113	59	3	184	293	1	110	7.96e-18	80.5
MsaG001432	MtrunA17_Chr1g0163151	77.333	75	17	0	219	293	147	221	3.04e-36	129
MsaG001432	MtrunA17_Chr1g0163151	43.363	113	61	2	184	293	1	113	2.42e-22	92.8
MsaG001432	MtrunA17_Chr3g0103181	28.720	289	179	8	9	292	12	278	2.87e-33	123
MsaG001432	MtrunA17_Chr3g0103171	29.137	278	174	8	20	292	5	264	6.63e-32	119
MsaG001432	MtrunA17_Chr3g0131891	31.849	292	168	9	14	292	28	301	1.64e-30	117
MsaG001432	MtrunA17_Chr1g0163101	39.394	165	80	4	14	178	26	170	3.32e-30	112
MsaG001432	MtrunA17_Chr7g0233561	29.836	305	183	10	8	292	17	310	9.39e-30	115
MsaG001432	MtrunA17_Chr8g0390841	28.571	294	183	9	14	292	48	329	3.45e-29	116
MsaG001432	MtrunA17_Chr7g0233541	29.553	291	172	8	21	292	2	278	1.13e-28	111
MsaG001432	MtrunA17_Chr7g0233521	28.470	281	171	7	21	292	2	261	6.98e-28	108
MsaG001432	MtrunA17_Chr1g0162161	37.975	158	80	6	21	178	4	143	6.15e-27	103
MsaG001432	MtrunA17_Chr3g0103191	29.070	258	159	7	9	260	12	251	3.70e-26	103
MsaG001432	MtrunA17_Chr1g0208771	27.835	291	178	11	20	292	12	288	4.63e-26	107
MsaG001432	MtrunA17_Chr1g0163121	45.614	114	57	2	19	132	9	117	5.05e-26	100
MsaG001432	MtrunA17_Chr6g0476181	38.037	163	85	5	21	178	2	153	9.22e-26	100
MsaG001432	MtrunA17_Chr1g0163081	41.071	112	61	2	21	132	6	112	7.13e-24	94.7
MsaG001432	MtrunA17_Chr7g0233571	31.707	246	107	8	1	214	1	217	1.52e-22	93.2
MsaG001432	MtrunA17_Chr7g0233531	28.723	282	169	8	21	292	2	261	2.82e-22	94.0
MsaG001432	MtrunA17_Chr3g0103151	32.692	156	88	4	9	158	12	156	8.22e-22	89.7
MsaG001432	MtrunA17_Chr1g0163141	32.544	169	101	4	17	178	7	169	4.93e-21	88.2
MsaG001432	MtrunA17_Chr1g0163071	27.869	305	166	10	21	292	2	285	1.75e-20	89.4
MsaG001432	MtrunA17_Chr1g0163221	29.286	280	162	9	14	280	20	276	4.20e-20	89.0
MsaG001432	MtrunA17_Chr1g0163161	42.000	100	54	3	33	132	1	96	2.04e-19	82.4
MsaG001432	MtrunA17_Chr4g0067431	28.276	290	183	10	9	280	15	297	2.09e-19	86.7
MsaG001432	MtrunA17_Chr5g0419201	32.653	147	90	3	14	158	25	164	8.95e-19	82.4
MsaG001432	MtrunA17_Chr6g0467351	36.697	109	66	2	13	118	23	131	1.69e-16	77.0
MsaG001432	MtrunA17_Chr3g0103201	25.862	232	152	6	64	292	5	219	3.24e-14	70.5
MsaG001432	MtrunA17_Chr4g0033961	37.624	101	57	2	7	101	4	104	1.06e-13	70.9
MsaG001432	MtrunA17_Chr6g0476171	50.820	61	30	0	233	293	185	245	2.26e-13	68.6
MsaG001432	MtrunA17_Chr1g0162441	33.333	111	67	3	7	110	5	115	2.96e-12	66.6
MsaG001432	MtrunA17_Chr1g0163091	31.624	117	72	3	184	292	1	117	9.88e-12	62.4
MsaG001432	MtrunA17_Chr3g0077461	21.111	270	151	7	14	281	246	455	1.20e-11	64.7
MsaG001432	MtrunA17_Chr1g0163061	36.264	91	55	2	14	101	24	114	1.66e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001432	AT3G18990.1	28.313	332	189	15	7	291	4	333	6.10e-24	99.8
MsaG001432	AT3G18990.2	28.313	332	189	15	7	291	4	333	8.06e-24	100

Find 47 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAACACCGTTTGGAAATTTA+AGG	0.151014	1:+20061949	None:intergenic
TAGAGGTTGGATAAAATTTA+TGG	0.178729	1:-20059667	MsaT001432.1:CDS
TTTGCAAAGTCTTTCAAATA+TGG	0.208675	1:-20061864	MsaT001432.1:CDS
GCCAAAGGAGTTTATGAAAA+TGG	0.215569	1:-20059784	MsaT001432.1:CDS
AAATATTGTGGAGTTGAAAA+TGG	0.256652	1:-20059751	MsaT001432.1:CDS
TTCATCAACTGATTTGATAT+TGG	0.273749	1:+20061758	None:intergenic
TATTTCTCCACATATATCTT+AGG	0.281171	1:+20061999	None:intergenic
TGGAGAGTAATGGTGATATT+TGG	0.287546	1:-20061908	MsaT001432.1:CDS
TTATGCCAATGGCTATTTCT+TGG	0.296975	1:-20061090	MsaT001432.1:intron
TTTGGAAATTTAAGGAATAT+AGG	0.302976	1:+20061957	None:intergenic
CCAACTAAAATGATAATAAA+TGG	0.306043	1:-20061603	MsaT001432.1:CDS
CTCTTAACTTTCAAATTCAT+TGG	0.314459	1:-20061837	MsaT001432.1:CDS
CATTAACAGCTTCAGATGTT+AGG	0.318603	1:+20061147	None:intergenic
AGATATATGTGGAGAAATAT+TGG	0.326941	1:-20061995	MsaT001432.1:CDS
TTGGAAATTTAAGGAATATA+GGG	0.346499	1:+20061958	None:intergenic
TGGCAAGAGAAAATTGAGTA+TGG	0.387713	1:-20061583	MsaT001432.1:CDS
ATAATTTATTTCTAAAGTAT+TGG	0.398912	1:+20061782	None:intergenic
CATGTCATTTCAATATGTTC+CGG	0.405450	1:-20062186	MsaT001432.1:CDS
CCAAAGGAGTTTATGAAAAT+GGG	0.408096	1:-20059783	MsaT001432.1:CDS
GAAGAATGCAAAGTGGAGAT+TGG	0.433387	1:-20059645	MsaT001432.1:CDS
AATATTGTGGAGTTGAAAAT+GGG	0.451536	1:-20059750	MsaT001432.1:CDS
AAGATTATCCTATGAAAATC+CGG	0.460649	1:+20062167	None:intergenic
CAAAGTAGCCATGGTGAAGA+AGG	0.465707	1:-20061180	MsaT001432.1:CDS
TTAACTTTCAAATTCATTGG+TGG	0.475675	1:-20061834	MsaT001432.1:CDS
CGTGGCTGTAGGTTCGGTAG+AGG	0.492240	1:-20059684	MsaT001432.1:CDS
CTCTTCATGACTTTCTTCTG+TGG	0.498976	1:+20061674	None:intergenic
AACTATTACGAGAGTATTCG+TGG	0.500607	1:-20059702	MsaT001432.1:CDS
AGTATTCGTGGCTGTAGGTT+CGG	0.502330	1:-20059690	MsaT001432.1:CDS
AGTCATTATAACTTCAAAAG+AGG	0.507233	1:+20061118	None:intergenic
ACCACCCAACCAAAATTCTC+AGG	0.510316	1:-20061552	MsaT001432.1:intron
GGGATATCATGAAAATATTG+TGG	0.512948	1:-20059763	MsaT001432.1:CDS
GTCATTATAACTTCAAAAGA+GGG	0.514498	1:+20061119	None:intergenic
GCTGTAGGTTCGGTAGAGGT+TGG	0.515331	1:-20059680	MsaT001432.1:CDS
ATATTCCTTAAATTTCCAAA+CGG	0.536219	1:-20061954	MsaT001432.1:CDS
AATATCAAATCAGTTGATGA+AGG	0.540855	1:-20061756	MsaT001432.1:CDS
TGATGACAGTTCAGATGAGG+TGG	0.583984	1:-20061637	MsaT001432.1:CDS
GAGGGTTCCTAAGATATATG+TGG	0.586451	1:-20062006	MsaT001432.1:CDS
ATGACTCGATCTTATGCCAA+TGG	0.587654	1:-20061101	MsaT001432.1:CDS
AGGTAGTAACAAAGTAGCCA+TGG	0.603454	1:-20061189	MsaT001432.1:CDS
GTATCTGCAGTGTGTGCCAA+AGG	0.603540	1:-20059799	MsaT001432.1:intron
ACTTACCAAGAAATAGCCAT+TGG	0.604417	1:+20061085	None:intergenic
TATGTGGAGAAATATTGGAA+AGG	0.617787	1:-20061990	MsaT001432.1:CDS
ACGAGAGTATTCGTGGCTGT+AGG	0.618825	1:-20059695	MsaT001432.1:CDS
ATTTATGGAAGAATGCAAAG+TGG	0.635124	1:-20059652	MsaT001432.1:CDS
TGAAAATGGGGAGAAAGTCA+TGG	0.640455	1:-20059737	MsaT001432.1:CDS
AAGTGATGACAGTTCAGATG+AGG	0.649994	1:-20061640	MsaT001432.1:CDS
ATATTGTGGAGTTGAAAATG+GGG	0.692849	1:-20059749	MsaT001432.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	20059581	20062207	20059581	ID=MsaG001432
Chr1	mRNA	20059581	20062207	20059581	ID=MsaT001432.1;Parent=MsaG001432
Chr1	exon	20059581	20059811	20059581	ID=MsaT001432.1.exon4;Parent=MsaT001432.1
Chr1	CDS	20059581	20059811	20059581	ID=cds.MsaT001432.1;Parent=MsaT001432.1
Chr1	exon	20061091	20061209	20061091	ID=MsaT001432.1.exon3;Parent=MsaT001432.1
Chr1	CDS	20061091	20061209	20061091	ID=cds.MsaT001432.1;Parent=MsaT001432.1
Chr1	exon	20061553	20062027	20061553	ID=MsaT001432.1.exon2;Parent=MsaT001432.1
Chr1	CDS	20061553	20062027	20061553	ID=cds.MsaT001432.1;Parent=MsaT001432.1
Chr1	exon	20062151	20062207	20062151	ID=MsaT001432.1.exon1;Parent=MsaT001432.1
Chr1	CDS	20062151	20062207	20062151	ID=cds.MsaT001432.1;Parent=MsaT001432.1

Gene Sequence

>MsaT001432.1

ATGTCATTTCAATATGTTCCGGATTTTCATAGGATAATCTTGCAAGATAAGAAACTTAGGGTTCCTAAGATATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGTAATGGTGATATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGTCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAATTATGCCAATATCAAATCAGTTGATGAAGGTGCTGAAGACACAGAAGAAGAAAGTCATGAAGAGAGTGATGAATCAAGTGATGATGAAGCCACAGAAGAAAGTCATGAAGAGAGTGATGAATCAAGTGATGACAGTTCAGATGAGGTGGAAATGCCAAAGCCAACTAAAATGATAATAAATGGCAAGAGAAAATTGAGTATGGATTTTGACACCACCCAACCAAAATTCTCAGGTAGTAACAAAGTAGCCATGGTGAAGAAGGCTAGAAAATACCTAACATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACTCGATCTTATGCCAATGGCTATTTCTTGTGTGTGCCAAAGGAGTTTATGAAAATGGGATATCATGAAAATATTGTGGAGTTGAAAATGGGGAGAAAGTCATGGCTCGTAAAAGTCAACTATTACGAGAGTATTCGTGGCTGTAGGTTCGGTAGAGGTTGGATAAAATTTATGGAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCTTCAAGTTAATTGATGAGAGAAAATTTGTGTTTGATGTTTCAATTGTTTGA

Protein sequence

>MsaT001432.1

MSFQYVPDFHRIILQDKKLRVPKIYVEKYWKGISNPIFLKFPNGVEQKIFWVESNGDIWFQKNWESFAKSFKYGYLLTFKFIGGSYFKVKIFGANTLEINYANIKSVDEGAEDTEEESHEESDESSDDEATEESHEESDESSDDSSDEVEMPKPTKMIINGKRKLSMDFDTTQPKFSGSNKVAMVKKARKYLTSEAVNENPSFEVIMTRSYANGYFLCVPKEFMKMGYHENIVELKMGRKSWLVKVNYYESIRGCRFGRGWIKFMEECKVEIGDTCLFKLIDERKFVFDVSIV*