AlfalfaGEDB | MsaG001455

M. sativa ssp. caerulea / MsaG001455

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001455	XP_039688461.1	88.961	308	30	1	1	308	1	304	0.0	517

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001455	sp\|Q8RYD1\|REM16_ARATH	24.549	277	173	5	28	279	36	301	1.64e-15	79.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001455	tr\|A0A396JU70\|A0A396JU70_MEDTR	89.610	308	27	2	1	308	1	303	0.0	517

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TFs/TRs:

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Gene ID	Type	Classification
MsaG001455	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001455	MsaG006279	0.814884	2.122619e-51	4.091195e-49
MsaG001455	MsaG021602	0.835524	2.912092e-56	9.908792e-54
MsaG001455	MsaG021767	0.827490	2.714156e-54	7.316548e-52
MsaG001455	MsaG025713	0.811506	1.160687e-50	2.056436e-48
MsaG001455	MsaG031211	0.841283	9.680941e-58	3.935009e-55

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001455	MtrunA17_Chr1g0163221	89.610	308	27	2	1	308	1	303	0.0	517
MsaG001455	MtrunA17_Chr4g0067431	64.329	328	93	6	1	308	1	324	1.35e-141	402
MsaG001455	MtrunA17_Chr6g0467351	58.824	238	77	3	1	224	1	231	8.72e-93	275
MsaG001455	MtrunA17_Chr1g0163061	50.566	265	71	3	1	205	1	265	5.11e-67	211
MsaG001455	MtrunA17_Chr1g0163131	31.699	306	171	13	1	281	1	293	2.58e-32	122
MsaG001455	MtrunA17_Chr1g0163071	28.435	313	176	9	31	309	2	300	2.98e-29	113
MsaG001455	MtrunA17_Chr3g0131891	27.891	294	201	7	9	295	13	302	9.28e-29	112
MsaG001455	MtrunA17_Chr6g0467361	65.169	89	27	3	218	303	7	94	1.44e-28	105
MsaG001455	MtrunA17_Chr3g0103181	29.139	302	175	12	7	295	4	279	1.58e-27	108
MsaG001455	MtrunA17_Chr1g0163181	28.763	299	174	11	19	294	9	291	7.05e-27	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001455	AT3G18990.2	25.872	344	192	13	15	302	6	342	1.62e-20	91.3
MsaG001455	AT3G18990.1	26.006	323	177	12	15	281	6	322	2.12e-20	90.5
MsaG001455	AT4G33280.1	24.549	277	173	5	28	279	36	301	1.67e-16	79.3
MsaG001455	AT3G18960.1	36.634	101	63	1	15	115	30	129	2.31e-15	73.9
MsaG001455	AT3G18960.2	36.634	101	63	1	15	115	30	129	2.85e-15	73.6
MsaG001455	AT4G01580.1	34.653	101	65	1	15	115	30	129	4.80e-14	70.1
MsaG001455	AT1G49475.1	35.135	111	70	2	15	125	34	142	2.78e-13	67.8
MsaG001455	AT3G18960.3	37.647	85	52	1	31	115	9	92	2.24e-11	62.0

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Find 35 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATCTGCACTAACTTG+TGG	0.589005	1:-20290452	MsaT001455.1:CDS
AAACATATGGACATGATGGA+AGG	0.599445	1:-20290536	MsaT001455.1:CDS
AAGCGTGAGCATGTGAACAA+TGG	0.705898	1:-20291106	MsaT001455.1:intron
AAGTAGTTGTGATGATATTA+AGG	0.299219	1:-20290985	MsaT001455.1:CDS
AATACCCGTCAAGAGAAACT+AGG	0.533719	1:-20291270	MsaT001455.1:CDS
AATCTGCACTAACTTGTGGT+TGG	0.573287	1:-20290448	MsaT001455.1:CDS
ACCATGTCTTCTCAAGAACA+TGG	0.657917	1:-20292014	MsaT001455.1:CDS
ACCATGTTCTTGAGAAGACA+TGG	0.602247	1:+20292013	None:intergenic
ATACATTGATAGAGATCGCT+TGG	0.539899	1:-20290880	MsaT001455.1:intron
ATACCCGTCAAGAGAAACTA+GGG	0.582374	1:-20291269	MsaT001455.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	20290298	20292033	20290298	ID=MsaG001455
Chr1	mRNA	20290298	20292033	20290298	ID=MsaT001455.1;Parent=MsaG001455
Chr1	exon	20290298	20290582	20290298	ID=MsaT001455.1.exon4;Parent=MsaT001455.1
Chr1	CDS	20290298	20290582	20290298	ID=cds.MsaT001455.1;Parent=MsaT001455.1
Chr1	exon	20290881	20291008	20290881	ID=MsaT001455.1.exon3;Parent=MsaT001455.1
Chr1	CDS	20290881	20291008	20290881	ID=cds.MsaT001455.1;Parent=MsaT001455.1
Chr1	exon	20291107	20291542	20291107	ID=MsaT001455.1.exon2;Parent=MsaT001455.1
Chr1	CDS	20291107	20291542	20291107	ID=cds.MsaT001455.1;Parent=MsaT001455.1
Chr1	exon	20291947	20292033	20291947	ID=MsaT001455.1.exon1;Parent=MsaT001455.1
Chr1	CDS	20291947	20292033	20291947	ID=cds.MsaT001455.1;Parent=MsaT001455.1

Gene Sequence

>MsaT001455.1

ATGTCTTCTCAAGAACATGGTCATCAGAGTAATGGTGTCCACTTTTTTAAGGTTATTCGTCAAAGTACCCTTCAAGAAGAAAAACTGAGTGTGCCCATAACTTTTGTGAAAAGGTATTGGAAAGGAATAACAAACCCAGTTACTCTAAGGTTTCCAAACATGATGGAAAAGAAAGTTTTTTGGGAGAAAACTAGTGAAAATGAAGTTATATTTTGCAATGGTTGGAAAGAACTTGCAAATTATTTGTCTTTGAATGAATCACAATTTTTGGTGTTTCAATATCAAGAAAATTCTGTCTTTAATGTGATTGTATTCGGTAGATGCGGATTAGAAATAAAATACCCGTCAAGAGAAACTAGGGAAGAATCTGAAGAGAGTGATAGTTCTTTGAAAATTATTGAGAACCCTTCATCATCACGGGTTAAAAGGCTAAAATTTTCAGCACCATCTATGGAAGTTTGTAAGAAGATGAAAATCAACTCAAAAGAACAAAAAGATTCTAAGCGTGAGCATGTGAACAATGGAAGTAGTTGTGATGATATTAAGGAGAGAAGTAGAATTTTGTTCCAGAAAGTGAAGAAAAAATTCGACTCTGATAAGGACTTTTTTGCATGTATGATCCAAAAGTCATACATTGATAGAGATCGCTTGGTCATACCAAATGAATTTGTCAAGAAACATATGGACATGATGGAAGGAAGAGATGATGCTACCCTTTTTGTTGACAAAGATAAATGGAATTTGAAGCTCACTTTAAATAAACAATCTGCACTAACTTGTGGTTGGAGAGAATTCCGTGAAGAGAATAATTTGAAATTTGGTGATGTTTGTGTTTTTGTGCTAAACAAAGGCAAAGGAACAGTTCCATTTCAAGTTGTTATTTTCTCTTTGGAAAAGGACTTGGAAACTCCTTATTTTGAAGGTAATTATATTTGA

Protein sequence

>MsaT001455.1

MSSQEHGHQSNGVHFFKVIRQSTLQEEKLSVPITFVKRYWKGITNPVTLRFPNMMEKKVFWEKTSENEVIFCNGWKELANYLSLNESQFLVFQYQENSVFNVIVFGRCGLEIKYPSRETREESEESDSSLKIIENPSSSRVKRLKFSAPSMEVCKKMKINSKEQKDSKREHVNNGSSCDDIKERSRILFQKVKKKFDSDKDFFACMIQKSYIDRDRLVIPNEFVKKHMDMMEGRDDATLFVDKDKWNLKLTLNKQSALTCGWREFREENNLKFGDVCVFVLNKGKGTVPFQVVIFSLEKDLETPYFEGNYI*