Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001552 | RHN78369.1 | 90.413 | 605 | 37 | 1 | 1 | 605 | 1 | 584 | 0.0 | 1118 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001552 | sp|Q336N8|JM706_ORYSJ | 51.255 | 478 | 228 | 3 | 27 | 501 | 85 | 560 | 1.48e-173 | 518 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001552 | tr|A0A396JJG9|A0A396JJG9_MEDTR | 90.413 | 605 | 37 | 1 | 1 | 605 | 1 | 584 | 0.0 | 1118 |
Gene ID | Type | Classification |
---|---|---|
MsaG001552 | TR | Jumonji |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG004998 | MsaG001552 | 0.866092 | 7.359880e-65 | 7.263820e-62 |
MsaG005537 | MsaG001552 | 0.856102 | 7.828998e-62 | 5.264280e-59 |
MsaG008185 | MsaG001552 | 0.836936 | 1.279325e-56 | 4.541814e-54 |
MsaG044624 | MsaG001552 | 0.834409 | 5.542159e-56 | 1.824009e-53 |
MsaG045987 | MsaG001552 | 0.802181 | 1.064032e-48 | 1.511443e-46 |
MsaG001552 | MsaG033149 | 0.802861 | 7.715561e-49 | 1.113180e-46 |
MsaG001552 | MsaG030315 | 0.804863 | 2.974116e-49 | 4.494729e-47 |
MsaG001552 | MsaG030588 | 0.819923 | 1.575577e-52 | 3.458144e-50 |
MsaG001552 | MsaG036524 | 0.802626 | 8.623317e-49 | 1.237516e-46 |
MsaG001552 | MsaG036751 | 0.834771 | 4.500333e-56 | 1.497203e-53 |
MsaG014376 | MsaG001552 | 0.820586 | 1.112291e-52 | 2.484528e-50 |
MsaG016650 | MsaG001552 | 0.808932 | 4.140896e-50 | 6.891774e-48 |
MsaG016651 | MsaG001552 | 0.832506 | 1.645235e-55 | 5.119235e-53 |
MsaG017062 | MsaG001552 | 0.835167 | 3.579385e-56 | 1.204957e-53 |
MsaG017543 | MsaG001552 | 0.800009 | 2.943811e-48 | 3.981123e-46 |
MsaG018225 | MsaG001552 | 0.805134 | 2.612919e-49 | 3.973710e-47 |
MsaG019382 | MsaG001552 | 0.844338 | 1.504655e-58 | 6.745905e-56 |
MsaG027390 | MsaG001552 | 0.804951 | 2.851165e-49 | 4.317706e-47 |
MsaG030955 | MsaG001552 | 0.814738 | 2.286238e-51 | 4.390283e-49 |
MsaG032593 | MsaG001552 | 0.808219 | 5.869408e-50 | 9.602153e-48 |
MsaG033030 | MsaG001552 | 0.812524 | 6.982354e-51 | 1.268549e-48 |
MsaG036047 | MsaG001552 | 0.841969 | 6.395000e-58 | 2.656816e-55 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001552 | MtrunA17_Chr1g0164731 | 90.413 | 605 | 37 | 1 | 1 | 605 | 1 | 584 | 0.0 | 1118 |
MsaG001552 | MtrunA17_Chr1g0164761 | 73.150 | 581 | 131 | 4 | 39 | 614 | 2 | 562 | 0.0 | 867 |
MsaG001552 | MtrunA17_Chr5g0410721 | 55.992 | 484 | 212 | 1 | 27 | 510 | 71 | 553 | 0.0 | 591 |
MsaG001552 | MtrunA17_Chr3g0116441 | 37.067 | 375 | 200 | 8 | 30 | 383 | 3 | 362 | 5.98e-67 | 238 |
MsaG001552 | MtrunA17_Chr8g0380981 | 36.856 | 388 | 170 | 10 | 41 | 362 | 39 | 417 | 7.60e-57 | 207 |
MsaG001552 | MtrunA17_Chr1g0189211 | 30.427 | 539 | 282 | 17 | 41 | 500 | 146 | 670 | 1.78e-54 | 200 |
MsaG001552 | MtrunA17_Chr7g0214951 | 75.000 | 120 | 12 | 2 | 218 | 336 | 99 | 201 | 1.01e-53 | 182 |
MsaG001552 | MtrunA17_Chr5g0397501 | 33.666 | 401 | 225 | 14 | 124 | 501 | 302 | 684 | 2.02e-50 | 188 |
MsaG001552 | MtrunA17_Chr1g0199511 | 44.149 | 188 | 101 | 1 | 189 | 376 | 291 | 474 | 6.06e-50 | 187 |
MsaG001552 | MtrunA17_Chr2g0303101 | 33.807 | 352 | 201 | 11 | 171 | 500 | 232 | 573 | 6.90e-44 | 168 |
MsaG001552 | MtrunA17_Chr7g0261401 | 25.000 | 440 | 284 | 12 | 193 | 610 | 338 | 753 | 8.48e-29 | 122 |
MsaG001552 | MtrunA17_Chr7g0214941 | 49.333 | 75 | 32 | 2 | 506 | 575 | 1 | 74 | 1.10e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001552 | AT5G46910.1 | 53.862 | 492 | 226 | 1 | 19 | 510 | 77 | 567 | 0.0 | 575 |
MsaG001552 | AT5G46910.2 | 53.862 | 492 | 226 | 1 | 19 | 510 | 77 | 567 | 0.0 | 574 |
MsaG001552 | AT2G34880.1 | 30.769 | 559 | 301 | 18 | 42 | 532 | 58 | 598 | 1.66e-59 | 213 |
MsaG001552 | AT3G48430.1 | 33.506 | 385 | 214 | 7 | 29 | 376 | 4 | 383 | 9.12e-59 | 214 |
MsaG001552 | AT4G20400.1 | 26.829 | 615 | 352 | 16 | 41 | 567 | 52 | 656 | 1.72e-56 | 206 |
MsaG001552 | AT1G63490.1 | 41.697 | 271 | 132 | 6 | 124 | 377 | 46 | 307 | 2.85e-56 | 206 |
MsaG001552 | AT1G63490.2 | 41.697 | 271 | 132 | 6 | 124 | 377 | 299 | 560 | 4.11e-56 | 206 |
MsaG001552 | AT1G63490.4 | 41.697 | 271 | 132 | 6 | 124 | 377 | 299 | 560 | 4.11e-56 | 206 |
MsaG001552 | AT1G30810.3 | 30.741 | 540 | 276 | 17 | 41 | 500 | 55 | 576 | 5.18e-56 | 203 |
MsaG001552 | AT1G30810.2 | 30.741 | 540 | 276 | 17 | 41 | 500 | 55 | 576 | 5.18e-56 | 203 |
MsaG001552 | AT1G30810.1 | 30.741 | 540 | 276 | 17 | 41 | 500 | 55 | 576 | 5.18e-56 | 203 |
MsaG001552 | AT4G20400.2 | 27.197 | 603 | 341 | 16 | 53 | 567 | 7 | 599 | 3.10e-53 | 196 |
MsaG001552 | AT1G08620.2 | 33.890 | 419 | 193 | 12 | 42 | 386 | 143 | 551 | 8.83e-53 | 196 |
MsaG001552 | AT1G08620.4 | 33.890 | 419 | 193 | 12 | 42 | 386 | 143 | 551 | 8.83e-53 | 196 |
MsaG001552 | AT1G08620.1 | 33.890 | 419 | 193 | 12 | 42 | 386 | 143 | 551 | 8.83e-53 | 196 |
MsaG001552 | AT1G08620.3 | 33.890 | 419 | 193 | 12 | 42 | 386 | 157 | 565 | 9.09e-53 | 196 |
MsaG001552 | AT5G04240.1 | 46.809 | 188 | 96 | 1 | 189 | 376 | 259 | 442 | 1.35e-50 | 189 |
MsaG001552 | AT2G38950.1 | 26.394 | 538 | 317 | 18 | 39 | 521 | 102 | 615 | 1.01e-33 | 137 |
MsaG001552 | AT1G63490.3 | 51.724 | 87 | 42 | 0 | 291 | 377 | 15 | 101 | 9.30e-24 | 107 |
Find 95 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGCCATTGTACAGTCTTTC+TGG | 0.128715 | 1:+22227050 | MsaT001552.1:CDS |
TTGATTTGGATGATCTAAAT+TGG | 0.212573 | 1:+22224934 | MsaT001552.1:CDS |
TGTCTTAATGAAAGAGAAAA+AGG | 0.225632 | 1:+22225248 | MsaT001552.1:CDS |
GCTCCTGAGGCTTCTAAATA+TGG | 0.273176 | 1:+22225038 | MsaT001552.1:CDS |
TTGGTGATTGGTTTCCATTT+GGG | 0.283394 | 1:+22226882 | MsaT001552.1:CDS |
TCCTGCAATATCTTCTGTTT+TGG | 0.293249 | 1:+22227913 | MsaT001552.1:CDS |
AATCCAGCATGATATGAATT+AGG | 0.298533 | 1:-22226323 | None:intergenic |
CAAATCGAATGAACTTGATT+TGG | 0.304291 | 1:+22224920 | MsaT001552.1:CDS |
GCAGGATTAGTGGCACTAAT+TGG | 0.313079 | 1:-22225219 | None:intergenic |
AGTTCCTCATATGGAATTAT+AGG | 0.316333 | 1:-22226944 | None:intergenic |
TGTTCTGATGGATGGTATAC+TGG | 0.323713 | 1:-22224978 | None:intergenic |
GAGAAGGGAACAGTTGAGTA+TGG | 0.324983 | 1:+22225574 | MsaT001552.1:CDS |
AGATCTTCAAATACATCATT+AGG | 0.331595 | 1:+22227133 | MsaT001552.1:CDS |
ATAAAGGGTTCGCGGTCTTT+TGG | 0.338413 | 1:-22227852 | None:intergenic |
ATTGGTGATTGGTTTCCATT+TGG | 0.339040 | 1:+22226881 | MsaT001552.1:CDS |
TTACAAAGAAGTTCCTCATA+TGG | 0.344918 | 1:-22226953 | None:intergenic |
TTACCATGGAAAAGGCAAAT+TGG | 0.347643 | 1:-22227229 | None:intergenic |
GGATGGTATACTGGACATTC+TGG | 0.356909 | 1:-22224969 | None:intergenic |
TATATCCTTCACATTCCATT+TGG | 0.359513 | 1:-22225310 | None:intergenic |
TAAACTTTGCTATTGGTGAT+TGG | 0.380389 | 1:+22226870 | MsaT001552.1:CDS |
AATGAGCAAATTCAATTTGA+AGG | 0.382800 | 1:+22225648 | MsaT001552.1:CDS |
CTCATTCCAAGTTTATCATC+AGG | 0.397301 | 1:-22225631 | None:intergenic |
GACGCATTCAATCATGCTAT+AGG | 0.420173 | 1:-22227476 | None:intergenic |
TTCTGAACTGCAAAATCTGT+TGG | 0.420224 | 1:-22225497 | None:intergenic |
GAAGAACTGTCAACTCTGTA+AGG | 0.420264 | 1:+22227711 | MsaT001552.1:CDS |
GACAAAATCAGCAGGATTAG+TGG | 0.424845 | 1:-22225229 | None:intergenic |
AAACAATTGTACAGCCTCTT+CGG | 0.431193 | 1:+22225283 | MsaT001552.1:CDS |
TCATGTTGTAACAAGACATT+AGG | 0.439737 | 1:-22226248 | None:intergenic |
TTTCTTGCTGCAGCCCCAAA+TGG | 0.452844 | 1:-22226896 | None:intergenic |
GAAGCTGTAAACTTTGCTAT+TGG | 0.453482 | 1:+22226863 | MsaT001552.1:CDS |
AGCCTCTTCGGCTTTCCAAA+TGG | 0.455559 | 1:+22225295 | MsaT001552.1:CDS |
TGCTCAAATTCTTGTTCTGA+TGG | 0.458499 | 1:-22224990 | None:intergenic |
GCTACCTATAATTCCATATG+AGG | 0.458631 | 1:+22226940 | MsaT001552.1:CDS |
ACTGAAAGCAGAATGATAAT+CGG | 0.460027 | 1:+22227669 | MsaT001552.1:intron |
CTGATCCTATGCTTTACATT+GGG | 0.461409 | 1:+22225913 | MsaT001552.1:CDS |
TTCATTAAGACAAAATCAGC+AGG | 0.464993 | 1:-22225237 | None:intergenic |
ACATGATGTGCCGGTTTACA+AGG | 0.470430 | 1:+22226265 | MsaT001552.1:CDS |
TACAAGGCGGTGCAAAAGCC+AGG | 0.481676 | 1:+22226281 | MsaT001552.1:CDS |
TTTCCTAATTCATATCATGC+TGG | 0.481919 | 1:+22226320 | MsaT001552.1:CDS |
ACTGATCCTATGCTTTACAT+TGG | 0.488180 | 1:+22225912 | MsaT001552.1:CDS |
CAAATTCTTGTTCTGATGGA+TGG | 0.494920 | 1:-22224986 | None:intergenic |
GGTGGAAATAAAACTTGGTA+TGG | 0.496778 | 1:+22226095 | MsaT001552.1:CDS |
ATTTACATATCAAGAATTTG+AGG | 0.498743 | 1:+22225453 | MsaT001552.1:CDS |
TGACATGCAGCCTCTGCCAT+AGG | 0.501176 | 1:+22227161 | MsaT001552.1:CDS |
ACCAAAACAGAAGATATTGC+AGG | 0.502442 | 1:-22227914 | None:intergenic |
AATTGAGAGGCTGCCGAGCT+AGG | 0.502653 | 1:-22226122 | None:intergenic |
TGGTGATTGGTTTCCATTTG+GGG | 0.516058 | 1:+22226883 | MsaT001552.1:CDS |
TGCTATTCAGTATGTTTGCA+TGG | 0.518171 | 1:+22225937 | MsaT001552.1:CDS |
TAGAAGATCACTATTTGTAC+AGG | 0.521776 | 1:+22225964 | MsaT001552.1:CDS |
CGAAATGATACATGGAGAGA+AGG | 0.529280 | 1:+22225558 | MsaT001552.1:CDS |
TTACCTTCCTCTCTTAGAGA+AGG | 0.529901 | 1:-22225337 | None:intergenic |
CTCAAATTATAAAGGGTTCG+CGG | 0.531379 | 1:-22227860 | None:intergenic |
ACTTAGGTGGAAATAAAACT+TGG | 0.531960 | 1:+22226090 | MsaT001552.1:CDS |
TTAGCAGAACATGGAGAGAA+TGG | 0.532587 | 1:+22226185 | MsaT001552.1:CDS |
TGTGATCCTGATGATAAACT+TGG | 0.532849 | 1:+22225625 | MsaT001552.1:CDS |
TGTTGTAACAAGACATTAGG+AGG | 0.534027 | 1:-22226245 | None:intergenic |
AGCATAAATTATCATCACTT+AGG | 0.537173 | 1:+22226074 | MsaT001552.1:intron |
TCTACAGAAAATTGCTCCTG+AGG | 0.540615 | 1:+22225025 | MsaT001552.1:CDS |
ATACCATATTTAGAAGCCTC+AGG | 0.547248 | 1:-22225041 | None:intergenic |
TTGGTATGGTGTGCCTAGCT+CGG | 0.549146 | 1:+22226109 | MsaT001552.1:CDS |
AAGCTACATAACAATCCCTA+TGG | 0.550057 | 1:-22227177 | None:intergenic |
AAGGTGATGACAAACTCTCC+TGG | 0.552268 | 1:-22226299 | None:intergenic |
GAGTATGGAGTCAACATTGA+GGG | 0.553863 | 1:+22225589 | MsaT001552.1:CDS |
ATGGAAAAGGCAAATTGGAT+AGG | 0.554570 | 1:-22227224 | None:intergenic |
GACATGCAGCCTCTGCCATA+GGG | 0.557662 | 1:+22227162 | MsaT001552.1:CDS |
TAACCTTCTCTAAGAGAGGA+AGG | 0.559927 | 1:+22225334 | MsaT001552.1:CDS |
CAAGACATTAGGAGGGAACA+TGG | 0.568622 | 1:-22226237 | None:intergenic |
TTCTGGCACGAAATGATACA+TGG | 0.572727 | 1:+22225550 | MsaT001552.1:CDS |
TACTTCTCCATCAGTGATGA+GGG | 0.579966 | 1:+22227829 | MsaT001552.1:CDS |
GAAATGATACATGGAGAGAA+GGG | 0.582021 | 1:+22225559 | MsaT001552.1:CDS |
ATTTGAGGCTATCGCAAACA+AGG | 0.584174 | 1:+22225468 | MsaT001552.1:CDS |
ATAATAACCTTCTCTAAGAG+AGG | 0.584975 | 1:+22225330 | MsaT001552.1:CDS |
ATAAATTATCATCACTTAGG+TGG | 0.586118 | 1:+22226077 | MsaT001552.1:CDS |
CATAACAATCCCTATGGCAG+AGG | 0.587190 | 1:-22227171 | None:intergenic |
CAAAAGCAAACTCGAAGCCA+TGG | 0.587402 | 1:+22227018 | MsaT001552.1:CDS |
TATCATGCTGGATTTAGTCA+TGG | 0.587724 | 1:+22226332 | MsaT001552.1:CDS |
AAGAACTGTCAACTCTGTAA+GGG | 0.595848 | 1:+22227712 | MsaT001552.1:CDS |
AACAAAATCTTAGCAGAACA+TGG | 0.596081 | 1:+22226176 | MsaT001552.1:CDS |
CTTGTTACAACATGATGTGC+CGG | 0.599827 | 1:+22226256 | MsaT001552.1:CDS |
ATACTTCTCCATCAGTGATG+AGG | 0.601559 | 1:+22227828 | MsaT001552.1:CDS |
AATGGCACAATAAGATGCCA+TGG | 0.612133 | 1:-22227035 | None:intergenic |
TTCCATTTGGAAAGCCGAAG+AGG | 0.612215 | 1:-22225297 | None:intergenic |
GCTTTCCAAATGGAATGTGA+AGG | 0.614974 | 1:+22225305 | MsaT001552.1:CDS |
AGCATCCCAATGTAAAGCAT+AGG | 0.618659 | 1:-22225918 | None:intergenic |
AAAAGAATCAGAAGACGACA+AGG | 0.627850 | 1:+22227789 | MsaT001552.1:CDS |
TAAACTGAAAACAAGAGTCA+CGG | 0.629474 | 1:+22227745 | MsaT001552.1:CDS |
CCGTTGCGTTTAGTTGACAG+AGG | 0.635990 | 1:+22225775 | MsaT001552.1:CDS |
AGCATGATATGAATTAGGAA+AGG | 0.636839 | 1:-22226318 | None:intergenic |
CTTGAATTTAGAATTTGGCG+CGG | 0.653536 | 1:+22225740 | MsaT001552.1:intron |
TGAGTATGGAGTCAACATTG+AGG | 0.665976 | 1:+22225588 | MsaT001552.1:CDS |
CCTCTGTCAACTAAACGCAA+CGG | 0.668558 | 1:-22225775 | None:intergenic |
ACTAAACGCAACGGAGACTG+CGG | 0.678157 | 1:-22225766 | None:intergenic |
GTTGTAACAAGACATTAGGA+GGG | 0.697642 | 1:-22226244 | None:intergenic |
TGATGTGCCGGTTTACAAGG+CGG | 0.701604 | 1:+22226268 | MsaT001552.1:CDS |
ATGCCAGAAAGACTGTACAA+TGG | 0.727660 | 1:-22227053 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 22224843 | 22227958 | 22224843 | ID=MsaG001552 |
Chr1 | mRNA | 22224843 | 22227958 | 22224843 | ID=MsaT001552.1;Parent=MsaG001552 |
Chr1 | exon | 22224843 | 22225059 | 22224843 | ID=MsaT001552.1.exon1;Parent=MsaT001552.1 |
Chr1 | CDS | 22224843 | 22225059 | 22224843 | ID=cds.MsaT001552.1;Parent=MsaT001552.1 |
Chr1 | exon | 22225199 | 22225355 | 22225199 | ID=MsaT001552.1.exon2;Parent=MsaT001552.1 |
Chr1 | CDS | 22225199 | 22225355 | 22225199 | ID=cds.MsaT001552.1;Parent=MsaT001552.1 |
Chr1 | exon | 22225450 | 22225669 | 22225450 | ID=MsaT001552.1.exon3;Parent=MsaT001552.1 |
Chr1 | CDS | 22225450 | 22225669 | 22225450 | ID=cds.MsaT001552.1;Parent=MsaT001552.1 |
Chr1 | exon | 22225751 | 22225804 | 22225751 | ID=MsaT001552.1.exon4;Parent=MsaT001552.1 |
Chr1 | CDS | 22225751 | 22225804 | 22225751 | ID=cds.MsaT001552.1;Parent=MsaT001552.1 |
Chr1 | exon | 22225906 | 22225985 | 22225906 | ID=MsaT001552.1.exon5;Parent=MsaT001552.1 |
Chr1 | CDS | 22225906 | 22225985 | 22225906 | ID=cds.MsaT001552.1;Parent=MsaT001552.1 |
Chr1 | exon | 22226076 | 22226353 | 22226076 | ID=MsaT001552.1.exon6;Parent=MsaT001552.1 |
Chr1 | CDS | 22226076 | 22226353 | 22226076 | ID=cds.MsaT001552.1;Parent=MsaT001552.1 |
Chr1 | exon | 22226849 | 22227247 | 22226849 | ID=MsaT001552.1.exon7;Parent=MsaT001552.1 |
Chr1 | CDS | 22226849 | 22227247 | 22226849 | ID=cds.MsaT001552.1;Parent=MsaT001552.1 |
Chr1 | exon | 22227335 | 22227495 | 22227335 | ID=MsaT001552.1.exon8;Parent=MsaT001552.1 |
Chr1 | CDS | 22227335 | 22227495 | 22227335 | ID=cds.MsaT001552.1;Parent=MsaT001552.1 |
Chr1 | exon | 22227680 | 22227958 | 22227680 | ID=MsaT001552.1.exon9;Parent=MsaT001552.1 |
Chr1 | CDS | 22227680 | 22227958 | 22227680 | ID=cds.MsaT001552.1;Parent=MsaT001552.1 |
Gene Sequence |
Protein sequence |