AlfalfaGEDB | MsaG001552

M. sativa ssp. caerulea / MsaG001552

KEGG: K11446
GO: GO:0000003 GO:0000902 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009987 GO:0010033 GO:0010228 GO:0010605 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0099402 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251
PFAM: PF02375.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001552	RHN78369.1	90.413	605	37	1	1	605	1	584	0.0	1118

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001552	sp\|Q336N8\|JM706_ORYSJ	51.255	478	228	3	27	501	85	560	1.48e-173	518

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001552	tr\|A0A396JJG9\|A0A396JJG9_MEDTR	90.413	605	37	1	1	605	1	584	0.0	1118

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TFs/TRs:

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Gene ID	Type	Classification
MsaG001552	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001552	MsaG033149	0.802861	7.715561e-49	1.113180e-46
MsaG001552	MsaG030315	0.804863	2.974116e-49	4.494729e-47
MsaG001552	MsaG030588	0.819923	1.575577e-52	3.458144e-50
MsaG001552	MsaG036524	0.802626	8.623317e-49	1.237516e-46
MsaG001552	MsaG036751	0.834771	4.500333e-56	1.497203e-53
MsaG004998	MsaG001552	0.866092	7.359880e-65	7.263820e-62
MsaG005537	MsaG001552	0.856102	7.828998e-62	5.264280e-59
MsaG008185	MsaG001552	0.836936	1.279325e-56	4.541814e-54
MsaG014376	MsaG001552	0.820586	1.112291e-52	2.484528e-50
MsaG016650	MsaG001552	0.808932	4.140896e-50	6.891774e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001552	MtrunA17_Chr1g0164731	90.413	605	37	1	1	605	1	584	0.0	1118
MsaG001552	MtrunA17_Chr1g0164761	73.150	581	131	4	39	614	2	562	0.0	867
MsaG001552	MtrunA17_Chr5g0410721	55.992	484	212	1	27	510	71	553	0.0	591
MsaG001552	MtrunA17_Chr3g0116441	37.067	375	200	8	30	383	3	362	5.98e-67	238
MsaG001552	MtrunA17_Chr8g0380981	36.856	388	170	10	41	362	39	417	7.60e-57	207
MsaG001552	MtrunA17_Chr1g0189211	30.427	539	282	17	41	500	146	670	1.78e-54	200
MsaG001552	MtrunA17_Chr7g0214951	75.000	120	12	2	218	336	99	201	1.01e-53	182
MsaG001552	MtrunA17_Chr5g0397501	33.666	401	225	14	124	501	302	684	2.02e-50	188
MsaG001552	MtrunA17_Chr1g0199511	44.149	188	101	1	189	376	291	474	6.06e-50	187
MsaG001552	MtrunA17_Chr2g0303101	33.807	352	201	11	171	500	232	573	6.90e-44	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001552	AT5G46910.1	53.862	492	226	1	19	510	77	567	0.0	575
MsaG001552	AT5G46910.2	53.862	492	226	1	19	510	77	567	0.0	574
MsaG001552	AT2G34880.1	30.769	559	301	18	42	532	58	598	1.66e-59	213
MsaG001552	AT3G48430.1	33.506	385	214	7	29	376	4	383	9.12e-59	214
MsaG001552	AT4G20400.1	26.829	615	352	16	41	567	52	656	1.72e-56	206
MsaG001552	AT1G63490.1	41.697	271	132	6	124	377	46	307	2.85e-56	206
MsaG001552	AT1G63490.2	41.697	271	132	6	124	377	299	560	4.11e-56	206
MsaG001552	AT1G63490.4	41.697	271	132	6	124	377	299	560	4.11e-56	206
MsaG001552	AT1G30810.3	30.741	540	276	17	41	500	55	576	5.18e-56	203
MsaG001552	AT1G30810.2	30.741	540	276	17	41	500	55	576	5.18e-56	203

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Find 95 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATCAGAAGACGACA+AGG	0.627850	1:+22227789	MsaT001552.1:CDS
AAACAATTGTACAGCCTCTT+CGG	0.431193	1:+22225283	MsaT001552.1:CDS
AACAAAATCTTAGCAGAACA+TGG	0.596081	1:+22226176	MsaT001552.1:CDS
AAGAACTGTCAACTCTGTAA+GGG	0.595848	1:+22227712	MsaT001552.1:CDS
AAGCTACATAACAATCCCTA+TGG	0.550057	1:-22227177	None:intergenic
AAGGTGATGACAAACTCTCC+TGG	0.552268	1:-22226299	None:intergenic
AATCCAGCATGATATGAATT+AGG	0.298533	1:-22226323	None:intergenic
AATGAGCAAATTCAATTTGA+AGG	0.382800	1:+22225648	MsaT001552.1:CDS
AATGGCACAATAAGATGCCA+TGG	0.612133	1:-22227035	None:intergenic
AATTGAGAGGCTGCCGAGCT+AGG	0.502653	1:-22226122	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	22224843	22227958	22224843	ID=MsaG001552
Chr1	mRNA	22224843	22227958	22224843	ID=MsaT001552.1;Parent=MsaG001552
Chr1	exon	22224843	22225059	22224843	ID=MsaT001552.1.exon1;Parent=MsaT001552.1
Chr1	CDS	22224843	22225059	22224843	ID=cds.MsaT001552.1;Parent=MsaT001552.1
Chr1	exon	22225199	22225355	22225199	ID=MsaT001552.1.exon2;Parent=MsaT001552.1
Chr1	CDS	22225199	22225355	22225199	ID=cds.MsaT001552.1;Parent=MsaT001552.1
Chr1	exon	22225450	22225669	22225450	ID=MsaT001552.1.exon3;Parent=MsaT001552.1
Chr1	CDS	22225450	22225669	22225450	ID=cds.MsaT001552.1;Parent=MsaT001552.1
Chr1	exon	22225751	22225804	22225751	ID=MsaT001552.1.exon4;Parent=MsaT001552.1
Chr1	CDS	22225751	22225804	22225751	ID=cds.MsaT001552.1;Parent=MsaT001552.1
Chr1	exon	22225906	22225985	22225906	ID=MsaT001552.1.exon5;Parent=MsaT001552.1
Chr1	CDS	22225906	22225985	22225906	ID=cds.MsaT001552.1;Parent=MsaT001552.1
Chr1	exon	22226076	22226353	22226076	ID=MsaT001552.1.exon6;Parent=MsaT001552.1
Chr1	CDS	22226076	22226353	22226076	ID=cds.MsaT001552.1;Parent=MsaT001552.1
Chr1	exon	22226849	22227247	22226849	ID=MsaT001552.1.exon7;Parent=MsaT001552.1
Chr1	CDS	22226849	22227247	22226849	ID=cds.MsaT001552.1;Parent=MsaT001552.1
Chr1	exon	22227335	22227495	22227335	ID=MsaT001552.1.exon8;Parent=MsaT001552.1
Chr1	CDS	22227335	22227495	22227335	ID=cds.MsaT001552.1;Parent=MsaT001552.1
Chr1	exon	22227680	22227958	22227680	ID=MsaT001552.1.exon9;Parent=MsaT001552.1
Chr1	CDS	22227680	22227958	22227680	ID=cds.MsaT001552.1;Parent=MsaT001552.1

Gene Sequence

>MsaT001552.1

ATGGGTGCAACAAATGTTGTCAAATGTAAAAGAAGTAAAATTAGAAGAAAAATGGTTGAAAAAAGTTCAATTACTCACAAATCGAATGAACTTGATTTGGATGATCTAAATTGGACAAACATGATTCCAGAATGTCCAGTATACCATCCATCAGAACAAGAATTTGAGCATCCTTTGATTTATCTACAGAAAATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTAGTGCCACTAATCCTGCTGATTTTGTCTTAATGAAAGAGAAAAAGGACTTCAAGTTTGAAACAATTGTACAGCCTCTTCGGCTTTCCAAATGGAATGTGAAGGATATAATAACCTTCTCTAAGAGAGGAAGAAAATTTACATATCAAGAATTTGAGGCTATCGCAAACAAGGCATTTTCCAACAGATTTTGCAGTTCAGAAGATCTTTCTTCTTTAGATATCGAAAAAGCGTTCTGGCACGAAATGATACATGGAGAGAAGGGAACAGTTGAGTATGGAGTCAACATTGAGGGTAGTGTCTTTTCATGTGATCCTGATGATAAACTTGGAATGAGCAAATTCAATTTGAAGAATTTGGCGCGGCTGCCGCAGTCTCCGTTGCGTTTAGTTGACAGAGGAATTCCTGGAATAACTGATCCTATGCTTTACATTGGGATGCTATTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCACTTAGGTGGAAATAAAACTTGGTATGGTGTGCCTAGCTCGGCAGCCTCTCAATTTGAAAAGACTGTCTTGAATCATGTGTATTGCAACAAAATCTTAGCAGAACATGGAGAGAATGGTTCGTTCCAATTTCTTGCACAAAAAACAACCATGTTCCCTCCTAATGTCTTGTTACAACATGATGTGCCGGTTTACAAGGCGGTGCAAAAGCCAGGAGAGTTTGTCATCACCTTTCCTAATTCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCATTTGGGGCTGCAGCAAGAAAACGTTATGCACATCTTAAAATGCTACCTATAATTCCATATGAGGAACTTCTTTGTAAAGAAGCAATGCTTATCTACAAGTCCTCAAAAGTCAGAAGTTACAAAAGCAAACTCGAAGCCATGGCATCTTATTGTGCCATTGTACAGTCTTTCTGGCATCTTATGCAATTTTATAAGACATCACTATCTCGATTGAGCAATTCAAGAAAGTCATCAAGATCTTCAAATACATCATTAGGTTCTGTGACATGCAGCCTCTGCCATAGGGATTGTTATGTAGCTTACTTGTTGTGCAAGAAATGCTATTCCTATCCAATTTGCCTTTTCCATGACATTGTGCCAAAAACTTGCTTATGTGGGGGAAAATATACCGTTTTTAAGAAGAATGACATGTCAGAACTCGAAGATGCTGCCAAAAGTTTTGAACAGGTAAAAGAATTGATTGACATGTTATCTTTAACATGTATATTCTCCTATAGCATGATTGAATGCAATGATAATCGGCATGAAGAAAAAAGTTCTAGAAGAACTGTCAACTCTGTAAGGGCAGTATCTTCTAAACTGAAAACAAGAGTCACGGACAACGTCAAGCGAAGTGTTGAAAAGAATCAGAAGACGACAAGGAATCATCGTAAAAACAATACTTCTCCATCAGTGATGAGGGCCAAAAGACCGCGAACCCTTTATAATTTGAGAAAACATGAATCAAAATTGATCATAGAAGCTCCTGCAATATCTTCTGTTTTGGTGAGATCTGAAAAATCAAAATAA

Protein sequence

>MsaT001552.1

MGATNVVKCKRSKIRRKMVEKSSITHKSNELDLDDLNWTNMIPECPVYHPSEQEFEHPLIYLQKIAPEASKYGICKIVSPISATNPADFVLMKEKKDFKFETIVQPLRLSKWNVKDIITFSKRGRKFTYQEFEAIANKAFSNRFCSSEDLSSLDIEKAFWHEMIHGEKGTVEYGVNIEGSVFSCDPDDKLGMSKFNLKNLARLPQSPLRLVDRGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHLGGNKTWYGVPSSAASQFEKTVLNHVYCNKILAEHGENGSFQFLAQKTTMFPPNVLLQHDVPVYKAVQKPGEFVITFPNSYHAGFSHGFNCGEAVNFAIGDWFPFGAAARKRYAHLKMLPIIPYEELLCKEAMLIYKSSKVRSYKSKLEAMASYCAIVQSFWHLMQFYKTSLSRLSNSRKSSRSSNTSLGSVTCSLCHRDCYVAYLLCKKCYSYPICLFHDIVPKTCLCGGKYTVFKKNDMSELEDAAKSFEQVKELIDMLSLTCIFSYSMIECNDNRHEEKSSRRTVNSVRAVSSKLKTRVTDNVKRSVEKNQKTTRNHRKNNTSPSVMRAKRPRTLYNLRKHESKLIIEAPAISSVLVRSEKSK*