AlfalfaGEDB | MsaG001709

M. sativa ssp. caerulea / MsaG001709

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001709	KEH41073.1	91.071	168	12	2	1	166	1	167	4.66e-107	313

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001709	tr\|A0A072VI02\|A0A072VI02_MEDTR	91.071	168	12	2	1	166	1	167	2.23e-107	313

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG001709	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG001709	0.870464	2.914374e-66	3.443143e-63
MsaG000234	MsaG001709	0.803030	7.121579e-49	1.031510e-46
MsaG000364	MsaG001709	0.823071	2.978224e-53	7.108947e-51
MsaG000379	MsaG001709	0.803638	5.337969e-49	7.840887e-47
MsaG000479	MsaG001709	0.868256	1.509811e-65	1.627641e-62
MsaG000520	MsaG001709	0.897645	2.616294e-76	1.168853e-72
MsaG000553	MsaG001709	0.815854	1.294800e-51	2.557630e-49
MsaG000842	MsaG001709	0.894111	7.503582e-75	2.754020e-71
MsaG001223	MsaG001709	0.887124	4.080079e-72	1.037922e-68
MsaG001246	MsaG001709	0.878647	4.977033e-69	8.438263e-66

Showing 1 to 10 of 472 entries

Previous1 2 3 4 5…48Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001709	MtrunA17_Chr1g0166461	91.071	168	12	2	1	166	1	167	4.29e-111	313
MsaG001709	MtrunA17_Chr1g0170601	59.036	166	55	4	1	166	1	153	3.70e-58	178
MsaG001709	MtrunA17_Chr5g0423491	59.091	176	44	5	1	166	1	158	3.32e-53	166
MsaG001709	MtrunA17_Chr1g0187511	35.443	158	84	6	11	166	4	145	3.00e-15	68.9
MsaG001709	MtrunA17_Chr1g0187541	33.129	163	74	7	14	166	9	146	1.36e-13	64.3

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 35 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCTATGATAATGGT+AGG	0.569456	1:+25116385	MsaT001709.1:CDS
AAATGGTTTCTTCTTGGTTG+TGG	0.446475	1:-25116417	None:intergenic
AACTCATATCGAGTCTCACA+TGG	0.585317	1:+25116251	MsaT001709.1:CDS
ACTCAAAACATCTATGATAA+TGG	0.384781	1:+25116381	MsaT001709.1:CDS
ATCTTCAAATGATGGTACTA+AGG	0.499653	1:+25116521	MsaT001709.1:CDS
ATTGATTTCATTGATTTGGT+TGG	0.453682	1:+25116579	MsaT001709.1:CDS
ATTGCACTTGAGGATTGATA+TGG	0.362335	1:-25116314	None:intergenic
ATTGGAACATGAAAACCTGG+CGG	0.713059	1:-25116354	None:intergenic
CAAATTCACATGTTTACCAA+TGG	0.564592	1:+25116481	MsaT001709.1:CDS
CAACTCGGGTGCTCAAACAT+TGG	0.437124	1:+25116614	MsaT001709.1:CDS

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	25116156	25116656	25116156	ID=MsaG001709
Chr1	mRNA	25116156	25116656	25116156	ID=MsaT001709.1;Parent=MsaG001709
Chr1	exon	25116156	25116656	25116156	ID=MsaT001709.1.exon1;Parent=MsaT001709.1
Chr1	CDS	25116156	25116656	25116156	ID=cds.MsaT001709.1;Parent=MsaT001709.1

Gene Sequence

>MsaT001709.1

ATGACCAATGGCTTTAGTAACACGAGGCATGATGTGTTAAACTCGGTTGCATGTAGATTATGCAACCGAGTTTTCATAAGCACTCAAGCACTCATAACTCATATCGAGTCTCACATGGAGAACGAAGGTGCTGCGATAAGAAGACTCTATTCGACGGACCATATCAATCCTCAAGTGCAATTTCCTTCTCATTGTACCCCGCCAGGTTTTCATGTTCCAATTGACACTCAAAACATCTATGATAATGGTAGGATTTTCCAACCACAACCAAGAAGAAACCATTTTCTAAATGTTGGTTCTATGCAACTTACACCACATGGTTTGCCAAATTCACATGTTTACCAATGGAAGCATCTACAAGAAGAATCTTCAAATGATGGTACTAAGGCATATATCATGCAGCTTGAGAAACCTATCAAGAAAATTGATTTCATTGATTTGGTTGGTAATGATGATGACAACTCGGGTGCTCAAACATTGGATTTAGCACTTAAGCTCTAG

Protein sequence

>MsaT001709.1

MTNGFSNTRHDVLNSVACRLCNRVFISTQALITHIESHMENEGAAIRRLYSTDHINPQVQFPSHCTPPGFHVPIDTQNIYDNGRIFQPQPRRNHFLNVGSMQLTPHGLPNSHVYQWKHLQEESSNDGTKAYIMQLEKPIKKIDFIDLVGNDDDNSGAQTLDLALKL*