AlfalfaGEDB | MsaG001719

M. sativa ssp. caerulea / MsaG001719

KEGG: K14494
GO: GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141
PFAM: PF03514.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001719	AES91985.1	63.636	66	23	1	1	66	24	88	5.34e-16	76.6

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001719	sp\|Q84TQ7\|GAI_GOSHI	57.971	69	28	1	1	68	162	230	4.65e-18	79.3

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001719	tr\|G7JNX8\|G7JNX8_MEDTR	63.636	66	23	1	1	66	24	88	2.55e-16	76.6

TFs/TRs:

Gene ID	Type	Classification
MsaG001719	TF	GRAS

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001719	MtrunA17_Chr4g0068471	63.636	66	23	1	1	66	24	88	4.91e-20	76.6
MsaG001719	MtrunA17_Chr3g0110971	61.290	62	24	0	1	62	207	268	7.99e-19	78.2
MsaG001719	MtrunA17_Chr8g0376381	50.000	56	28	0	7	62	163	218	1.33e-12	60.5

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001719	AT2G01570.1	52.239	67	32	1	67	212	278	1.53e-15	69.3
MsaG001719	AT1G66350.1	51.613	62	30	1	62	143	204	2.98e-15	68.6
MsaG001719	AT5G17490.1	53.125	64	30	4	67	151	214	2.98e-15	68.6
MsaG001719	AT1G14920.1	49.254	67	34	1	67	160	226	3.81e-15	68.2
MsaG001719	AT3G03450.1	51.613	62	30	1	62	171	232	8.92e-15	67.0

Find 9 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGTTCAACCCCTATCGCCTC+TGG	0.395762	1:-25261440	None:intergenic
CCTCTATGCTAAAATTAGTC+AGG	0.453663	1:-25261632	None:intergenic
CCCTATCGCCTCTGGGTCCA+TGG	0.457846	1:-25261432	None:intergenic
CCATGGACCCAGAGGCGATA+GGG	0.457994	1:+25261432	None:intergenic
CGAGCATAATATTCTCTCGC+TGG	0.479992	1:-25261496	None:intergenic
CATGGACCCAGAGGCGATAG+GGG	0.566921	1:+25261433	None:intergenic
GTTCAACCCCTATCGCCTCT+GGG	0.580458	1:-25261439	None:intergenic
TCCATGGACCCAGAGGCGAT+AGG	0.603401	1:+25261431	None:intergenic
ACTGATTTCCATGGACCCAG+AGG	0.699900	1:+25261424	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	25261434	25261640	25261434	ID=MsaG001719
Chr1	mRNA	25261434	25261640	25261434	ID=MsaT001719.1;Parent=MsaG001719
Chr1	exon	25261434	25261640	25261434	ID=MsaT001719.1.exon1;Parent=MsaT001719.1
Chr1	CDS	25261434	25261640	25261434	ID=cds.MsaT001719.1;Parent=MsaT001719.1

Gene Sequence	>MsaT001719.1 ATGGACCCAGAGGCGATAGGGGTTGAACTTGTTCACATTTTGATGGCGTGTGATGAAGCTATCCAGCGAGAGAATATTATGCTCGCAAACATGCTCGTGAGACGCATTGCATTGTTAACTTCGTTGCAAACTCGAGTGATGAGTAATGTTGCTTCGTATTTCGCTGAAGCTTTTGCTCGGAGAATCAACATATTTGATCCTGACTAA
Protein sequence	>MsaT001719.1 MDPEAIGVELVHILMACDEAIQRENIMLANMLVRRIALLTSLQTRVMSNVASYFAEAFARRINIFDPD*