Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001735 | XP_003589957.2 | 99.782 | 458 | 1 | 0 | 1 | 458 | 1 | 458 | 0.0 | 938 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001735 | sp|Q9LW62|CKL10_ARATH | 77.511 | 458 | 86 | 4 | 2 | 458 | 1 | 442 | 0.0 | 723 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001735 | tr|G7I3R5|G7I3R5_MEDTR | 99.782 | 458 | 1 | 0 | 1 | 458 | 1 | 458 | 0.0 | 938 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001735 | MtrunA17_Chr1g0166821 | 99.782 | 458 | 1 | 0 | 1 | 458 | 1 | 458 | 0.0 | 938 |
MsaG001735 | MtrunA17_Chr1g0187571 | 86.022 | 465 | 57 | 3 | 1 | 458 | 1 | 464 | 0.0 | 770 |
MsaG001735 | MtrunA17_Chr7g0261501 | 77.440 | 461 | 94 | 6 | 2 | 452 | 1 | 461 | 0.0 | 701 |
MsaG001735 | MtrunA17_Chr1g0183631 | 72.391 | 460 | 110 | 7 | 2 | 452 | 1 | 452 | 0.0 | 668 |
MsaG001735 | MtrunA17_Chr1g0167261 | 74.731 | 372 | 66 | 4 | 1 | 368 | 1 | 348 | 0.0 | 553 |
MsaG001735 | MtrunA17_Chr2g0329981 | 64.186 | 430 | 129 | 5 | 2 | 424 | 1 | 412 | 0.0 | 551 |
MsaG001735 | MtrunA17_Chr4g0071031 | 62.980 | 443 | 144 | 6 | 2 | 425 | 1 | 442 | 0.0 | 548 |
MsaG001735 | MtrunA17_Chr8g0342821 | 60.851 | 470 | 162 | 8 | 2 | 452 | 1 | 467 | 0.0 | 544 |
MsaG001735 | MtrunA17_Chr8g0390211 | 61.305 | 429 | 147 | 7 | 2 | 420 | 1 | 420 | 0.0 | 524 |
MsaG001735 | MtrunA17_Chr6g0486611 | 62.704 | 429 | 134 | 10 | 2 | 416 | 1 | 417 | 0.0 | 522 |
MsaG001735 | MtrunA17_Chr2g0299661 | 57.415 | 472 | 172 | 9 | 2 | 452 | 1 | 464 | 1.25e-180 | 513 |
MsaG001735 | MtrunA17_Chr1g0146151 | 54.567 | 427 | 178 | 4 | 2 | 420 | 1 | 419 | 1.46e-166 | 475 |
MsaG001735 | MtrunA17_Chr3g0140071 | 54.628 | 443 | 162 | 6 | 2 | 418 | 1 | 430 | 2.73e-165 | 473 |
MsaG001735 | MtrunA17_Chr7g0214531 | 39.649 | 285 | 153 | 6 | 6 | 274 | 31 | 312 | 2.22e-60 | 207 |
MsaG001735 | MtrunA17_Chr3g0140431 | 38.710 | 279 | 158 | 6 | 6 | 274 | 32 | 307 | 2.81e-57 | 199 |
MsaG001735 | MtrunA17_Chr1g0213321 | 38.028 | 284 | 162 | 6 | 6 | 278 | 113 | 393 | 5.79e-57 | 199 |
MsaG001735 | MtrunA17_Chr1g0146301 | 37.276 | 279 | 162 | 6 | 6 | 274 | 118 | 393 | 8.52e-56 | 196 |
MsaG001735 | MtrunA17_Chr7g0253211 | 37.234 | 282 | 161 | 5 | 10 | 278 | 324 | 602 | 1.48e-53 | 192 |
MsaG001735 | MtrunA17_Chr8g0340491 | 37.234 | 282 | 155 | 6 | 10 | 274 | 128 | 404 | 4.08e-51 | 184 |
MsaG001735 | MtrunA17_Chr3g0107051 | 31.050 | 219 | 129 | 8 | 6 | 215 | 17 | 222 | 1.83e-13 | 72.0 |
MsaG001735 | MtrunA17_Chr4g0075541 | 27.305 | 282 | 175 | 10 | 12 | 282 | 89 | 351 | 2.37e-13 | 71.2 |
MsaG001735 | MtrunA17_Chr5g0405421 | 25.000 | 224 | 151 | 6 | 9 | 224 | 98 | 312 | 1.80e-12 | 69.3 |
MsaG001735 | MtrunA17_Chr7g0267751 | 27.189 | 217 | 134 | 8 | 10 | 216 | 135 | 337 | 1.10e-11 | 67.0 |
MsaG001735 | MtrunA17_Chr7g0245031 | 33.871 | 124 | 69 | 4 | 108 | 229 | 250 | 362 | 2.27e-11 | 65.9 |
MsaG001735 | MtrunA17_Chr7g0272841 | 24.537 | 216 | 144 | 4 | 9 | 214 | 67 | 273 | 4.42e-11 | 65.1 |
MsaG001735 | MtrunA17_Chr4g0072831 | 30.719 | 153 | 74 | 6 | 8 | 154 | 8 | 134 | 5.43e-11 | 63.5 |
MsaG001735 | MtrunA17_Chr4g0001331 | 30.667 | 225 | 126 | 12 | 5 | 216 | 15 | 222 | 5.83e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG001735 | AT3G23340.1 | 77.511 | 458 | 86 | 4 | 2 | 458 | 1 | 442 | 0.0 | 723 |
MsaG001735 | AT4G14340.1 | 75.647 | 464 | 92 | 5 | 2 | 458 | 7 | 456 | 0.0 | 717 |
MsaG001735 | AT3G23340.2 | 74.891 | 458 | 84 | 5 | 2 | 458 | 1 | 428 | 0.0 | 687 |
MsaG001735 | AT5G43320.1 | 72.708 | 480 | 108 | 8 | 2 | 458 | 1 | 480 | 0.0 | 683 |
MsaG001735 | AT1G04440.1 | 71.795 | 468 | 121 | 3 | 2 | 458 | 1 | 468 | 0.0 | 676 |
MsaG001735 | AT4G28540.1 | 71.639 | 476 | 107 | 9 | 2 | 452 | 5 | 477 | 0.0 | 664 |
MsaG001735 | AT1G03930.1 | 73.517 | 472 | 101 | 9 | 2 | 452 | 1 | 469 | 0.0 | 651 |
MsaG001735 | AT5G44100.1 | 71.158 | 475 | 112 | 6 | 2 | 452 | 1 | 474 | 0.0 | 630 |
MsaG001735 | AT5G44100.2 | 71.158 | 475 | 112 | 6 | 2 | 452 | 1 | 474 | 0.0 | 630 |
MsaG001735 | AT4G14340.2 | 86.503 | 326 | 43 | 1 | 2 | 326 | 7 | 332 | 0.0 | 602 |
MsaG001735 | AT5G43320.2 | 84.545 | 330 | 46 | 2 | 2 | 326 | 1 | 330 | 0.0 | 575 |
MsaG001735 | AT5G43320.3 | 84.545 | 330 | 46 | 2 | 2 | 326 | 1 | 330 | 0.0 | 575 |
MsaG001735 | AT1G72710.1 | 69.895 | 382 | 105 | 5 | 2 | 377 | 1 | 378 | 0.0 | 544 |
MsaG001735 | AT4G26100.1 | 60.089 | 451 | 148 | 6 | 2 | 422 | 1 | 449 | 0.0 | 541 |
MsaG001735 | AT5G57015.1 | 77.143 | 315 | 69 | 1 | 2 | 316 | 1 | 312 | 0.0 | 531 |
MsaG001735 | AT2G19470.1 | 73.494 | 332 | 81 | 3 | 2 | 327 | 1 | 331 | 0.0 | 525 |
MsaG001735 | AT4G28880.3 | 72.930 | 314 | 85 | 0 | 2 | 315 | 1 | 314 | 1.26e-176 | 501 |
MsaG001735 | AT4G28880.2 | 72.930 | 314 | 85 | 0 | 2 | 315 | 1 | 314 | 1.26e-176 | 501 |
MsaG001735 | AT4G28880.1 | 72.930 | 314 | 85 | 0 | 2 | 315 | 1 | 314 | 1.26e-176 | 501 |
MsaG001735 | AT4G28880.4 | 72.930 | 314 | 85 | 0 | 2 | 315 | 1 | 314 | 1.26e-176 | 501 |
MsaG001735 | AT4G28860.1 | 61.765 | 408 | 124 | 8 | 2 | 391 | 1 | 394 | 1.13e-175 | 498 |
MsaG001735 | AT4G28860.2 | 71.875 | 320 | 85 | 2 | 2 | 321 | 1 | 315 | 3.16e-175 | 496 |
MsaG001735 | AT4G08800.1 | 66.107 | 298 | 69 | 2 | 2 | 299 | 1 | 266 | 5.98e-146 | 418 |
MsaG001735 | AT2G25760.2 | 40.357 | 280 | 152 | 4 | 10 | 274 | 107 | 386 | 5.58e-62 | 213 |
MsaG001735 | AT2G25760.1 | 39.643 | 280 | 151 | 5 | 10 | 274 | 107 | 383 | 7.09e-59 | 205 |
MsaG001735 | AT3G13670.1 | 35.640 | 289 | 167 | 6 | 6 | 278 | 131 | 416 | 3.99e-54 | 192 |
MsaG001735 | AT3G03940.1 | 36.170 | 282 | 164 | 5 | 10 | 278 | 140 | 418 | 1.35e-53 | 191 |
MsaG001735 | AT5G18190.2 | 36.170 | 282 | 164 | 5 | 10 | 278 | 130 | 408 | 2.16e-53 | 190 |
MsaG001735 | AT5G18190.1 | 36.170 | 282 | 164 | 5 | 10 | 278 | 130 | 408 | 2.16e-53 | 190 |
MsaG001735 | AT3G50530.1 | 25.751 | 233 | 138 | 7 | 6 | 220 | 144 | 359 | 1.15e-12 | 70.5 |
MsaG001735 | AT3G06030.1 | 26.389 | 216 | 140 | 7 | 9 | 214 | 67 | 273 | 8.02e-12 | 67.8 |
MsaG001735 | AT1G62400.1 | 26.761 | 284 | 174 | 11 | 12 | 282 | 88 | 350 | 8.75e-12 | 67.0 |
MsaG001735 | AT1G30270.1 | 27.854 | 219 | 133 | 8 | 8 | 215 | 29 | 233 | 3.33e-11 | 65.5 |
MsaG001735 | AT1G30270.2 | 27.854 | 219 | 133 | 8 | 8 | 215 | 29 | 233 | 4.16e-11 | 65.5 |
Find 117 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCAGATGGTCCTGGGTTTA+AGG | 0.165568 | 1:-25488856 | None:intergenic |
TTCAAACTTGGGAGGAAAAT+TGG | 0.201290 | 1:+25484709 | MsaT001735.1:CDS |
AGTAGCAGACCAAGCTCTTC+TGG | 0.221963 | 1:+25489557 | MsaT001735.1:CDS |
GTCATTTGGAGAAATTTATT+TGG | 0.224733 | 1:+25484738 | MsaT001735.1:CDS |
TTGAAGAAGCATATACAATT+TGG | 0.250533 | 1:-25486209 | None:intergenic |
GTCATGGCCATTGACCTTCT+TGG | 0.314864 | 1:+25486619 | MsaT001735.1:CDS |
GTTATGATGGATCTTGTTAT+TGG | 0.331896 | 1:+25484679 | None:intergenic |
TCATTTGGAGAAATTTATTT+GGG | 0.336755 | 1:+25484739 | MsaT001735.1:CDS |
AAGCATTGAAGTACCTCTAT+TGG | 0.339689 | 1:-25488167 | None:intergenic |
GAAATTCGAGATAGATTATC+AGG | 0.341801 | 1:+25489248 | MsaT001735.1:CDS |
AAAATTGGAAGTGGGTCATT+TGG | 0.351862 | 1:+25484724 | MsaT001735.1:CDS |
TGTAGCAACCTGATTCTGAT+AGG | 0.353677 | 1:+25489483 | MsaT001735.1:intron |
TCTCTTAAGATATGAATAAT+CGG | 0.357282 | 1:-25488537 | None:intergenic |
ATATTGAAGTATCCACAAAT+TGG | 0.362130 | 1:+25488712 | MsaT001735.1:CDS |
AGTTTGACTATGTATTTGAT+TGG | 0.365329 | 1:+25488686 | MsaT001735.1:CDS |
ATATCTTAAGAGACTCTTCC+GGG | 0.366043 | 1:+25488547 | MsaT001735.1:CDS |
AGAAACACTAACCACATCTT+TGG | 0.368375 | 1:-25489348 | None:intergenic |
GCCTTAAACCCAGGACCATC+TGG | 0.374719 | 1:+25488855 | MsaT001735.1:CDS |
GAGCGATTAGAACGGCCTTC+AGG | 0.389926 | 1:+25488879 | MsaT001735.1:CDS |
CATATCTTAAGAGACTCTTC+CGG | 0.390501 | 1:+25488546 | MsaT001735.1:CDS |
ACCGCAATGATCGGCAATAG+TGG | 0.400015 | 1:-25488502 | None:intergenic |
TTTAAGGCTGGTTTCACACT+TGG | 0.402104 | 1:-25488840 | None:intergenic |
TTTAGGCCGCAAGGCAAATC+AGG | 0.406238 | 1:+25486891 | MsaT001735.1:CDS |
AATCGCTCTCCAGATGGTCC+TGG | 0.408461 | 1:-25488864 | None:intergenic |
GGTACGGGTAAAGGATGATT+TGG | 0.422925 | 1:-25489666 | None:intergenic |
GTAATGGCAGTGCTTCAAAA+AGG | 0.426296 | 1:+25489522 | MsaT001735.1:CDS |
AGCTTTGAGCTCCTGTCAAT+TGG | 0.426702 | 1:+25489725 | MsaT001735.1:CDS |
GATGGTCCTGGGTTTAAGGC+TGG | 0.435674 | 1:-25488852 | None:intergenic |
GATAACCTTCTCGAATGAAT+AGG | 0.436809 | 1:-25488571 | None:intergenic |
GTAGCAGACCAAGCTCTTCT+GGG | 0.445063 | 1:+25489558 | MsaT001735.1:CDS |
GAGCTCCTGTCAATTGGTAC+AGG | 0.445961 | 1:+25489731 | MsaT001735.1:CDS |
TGTCCCTGCGGTACGGGTAA+AGG | 0.446946 | 1:-25489675 | None:intergenic |
ACCTCGTGTCCCTGCGGTAC+GGG | 0.451847 | 1:-25489681 | None:intergenic |
CTGCGAGCCCTATCAGAATC+AGG | 0.454495 | 1:-25489491 | None:intergenic |
ACTAACCCGTGTTCTAGAAC+TGG | 0.454676 | 1:-25488737 | None:intergenic |
TTAAATAAGTCTTCGAGACT+TGG | 0.457011 | 1:-25486643 | None:intergenic |
ATTGGTGGAAAATTCAAACT+TGG | 0.459721 | 1:+25484697 | MsaT001735.1:CDS |
CTAGAACTGGATCCAATTTG+TGG | 0.461995 | 1:-25488724 | None:intergenic |
TGAGGATGCTTTGTCTTCAC+AGG | 0.464666 | 1:-25486172 | None:intergenic |
CTTTCATGCCTTGCCATGGA+AGG | 0.469976 | 1:-25488091 | None:intergenic |
ATACCTCATATAAAGTGGTC+TGG | 0.472466 | 1:+25486577 | MsaT001735.1:CDS |
TTTCATATTAGGTACCTGTA+TGG | 0.476195 | 1:-25487327 | None:intergenic |
CTCTTAAGATATGAATAATC+GGG | 0.477779 | 1:-25488536 | None:intergenic |
AAATTGTATATGCTTCTTCA+AGG | 0.478491 | 1:+25486211 | MsaT001735.1:CDS |
CTGCGCAAGGACTGCAGCAT+AGG | 0.482559 | 1:+25489303 | MsaT001735.1:CDS |
GAAAATGCTTACTCCAATAG+AGG | 0.494552 | 1:+25488154 | MsaT001735.1:CDS |
CACCTCGTGTCCCTGCGGTA+CGG | 0.496390 | 1:-25489682 | None:intergenic |
CGACTAGACCGGCTTTCACT+AGG | 0.501636 | 1:-25489584 | None:intergenic |
CCATGGCAAGGCATGAAAGC+TGG | 0.502381 | 1:+25488095 | MsaT001735.1:CDS |
AGAGGAAGTGGCTGTTAAGC+TGG | 0.503078 | 1:+25484869 | MsaT001735.1:CDS |
CTAGGTTCCCCAGAAGAGCT+TGG | 0.503285 | 1:-25489566 | None:intergenic |
AGTAGAGTATATGCACTCTC+GGG | 0.504876 | 1:+25486825 | MsaT001735.1:CDS |
GGTCTGCTACTTGATATCAT+AGG | 0.504963 | 1:-25489545 | None:intergenic |
TATAAAGTGGTCTGGAGTTG+AGG | 0.509261 | 1:+25486585 | MsaT001735.1:CDS |
ATCGCTCTCCAGATGGTCCT+GGG | 0.510903 | 1:-25488863 | None:intergenic |
TAAACCCATCAGAAAATTGT+CGG | 0.511510 | 1:-25486872 | None:intergenic |
ACTCCAGACCACTTTATATG+AGG | 0.512923 | 1:-25486580 | None:intergenic |
AAATATGATGTGAATTCTGT+TGG | 0.516022 | 1:-25488479 | None:intergenic |
GAGTAGAGTATATGCACTCT+CGG | 0.522104 | 1:+25486824 | MsaT001735.1:CDS |
TCATCCTTTACCCGTACCGC+AGG | 0.523644 | 1:+25489671 | MsaT001735.1:CDS |
CCAGCTTTCATGCCTTGCCA+TGG | 0.523784 | 1:-25488095 | None:intergenic |
CACATAAGCATATACCATAC+AGG | 0.528806 | 1:+25487313 | MsaT001735.1:CDS |
TTGGTGGAAAATTCAAACTT+GGG | 0.528933 | 1:+25484698 | MsaT001735.1:CDS |
GTAGCAACCTGATTCTGATA+GGG | 0.529158 | 1:+25489484 | MsaT001735.1:intron |
TGGATCCAGTTCTAGAACAC+GGG | 0.531689 | 1:+25488732 | MsaT001735.1:CDS |
ATAAAGTGGTCTGGAGTTGA+GGG | 0.536659 | 1:+25486586 | MsaT001735.1:CDS |
CTGGAATACCTCATATAAAG+TGG | 0.539142 | 1:+25486572 | MsaT001735.1:CDS |
CAGGTATACATTATTGACTA+CGG | 0.539979 | 1:+25487261 | MsaT001735.1:intron |
AGGGAAAACAAGAATCTCAC+TGG | 0.540312 | 1:+25487763 | MsaT001735.1:intron |
TGTGCAAACTCAAGAGGAAG+TGG | 0.545993 | 1:+25484857 | MsaT001735.1:CDS |
TATCTTCAAACCGCAATGAT+CGG | 0.546276 | 1:-25488511 | None:intergenic |
AAACCCATCAGAAAATTGTC+GGG | 0.547167 | 1:-25486871 | None:intergenic |
GATAGATTATCAGGTGCAGT+GGG | 0.549752 | 1:+25489257 | MsaT001735.1:CDS |
ATGATGGATCTTGTTATTGG+TGG | 0.549805 | 1:+25484682 | MsaT001735.1:CDS |
ACTTGGTCCAAGAAGGTCAA+TGG | 0.555497 | 1:-25486626 | None:intergenic |
CGGGACCTATTCATTCGAGA+AGG | 0.558168 | 1:+25488566 | MsaT001735.1:CDS |
GCTCGCAGTTCTACTCGTAA+TGG | 0.559763 | 1:+25489506 | MsaT001735.1:CDS |
TTGGACTCGTAGAGAAGTTG+AGG | 0.560210 | 1:-25486190 | None:intergenic |
CTTCGAGACTTGGTCCAAGA+AGG | 0.563259 | 1:-25486633 | None:intergenic |
CTTGGGAGGAAAATTGGAAG+TGG | 0.565797 | 1:+25484715 | MsaT001735.1:CDS |
CGTTCTAATCGCTCTCCAGA+TGG | 0.568142 | 1:-25488870 | None:intergenic |
GTTAACACTCACCTTGGAGT+TGG | 0.571211 | 1:+25487805 | MsaT001735.1:CDS |
AGAAGGAATGGCTCTGCGCA+AGG | 0.573456 | 1:+25489290 | MsaT001735.1:CDS |
TAGATTATCAGGTGCAGTGG+GGG | 0.578783 | 1:+25489259 | MsaT001735.1:CDS |
CTGGGGAACCTAGTGAAAGC+CGG | 0.580386 | 1:+25489576 | MsaT001735.1:CDS |
GTGAAACCAGCCTTAAACCC+AGG | 0.580552 | 1:+25488846 | MsaT001735.1:CDS |
TAGATACCTGATTTGCCTTG+CGG | 0.583445 | 1:-25486897 | None:intergenic |
TCGAGATCAATCGACTAGAC+CGG | 0.585197 | 1:-25489595 | None:intergenic |
GCAAGTGTTAACACTCACCT+TGG | 0.587854 | 1:+25487799 | MsaT001735.1:CDS |
GATGATTTGGATTCAAGACC+TGG | 0.588580 | 1:-25489653 | None:intergenic |
TGTTAATGTGCAAACTCAAG+AGG | 0.593524 | 1:+25484851 | MsaT001735.1:CDS |
TGCCTCACTCACCAACTCCA+AGG | 0.596982 | 1:-25487816 | None:intergenic |
AGATAGATTATCAGGTGCAG+TGG | 0.597787 | 1:+25489256 | MsaT001735.1:CDS |
GTGGAAAATTCAAACTTGGG+AGG | 0.601354 | 1:+25484701 | MsaT001735.1:CDS |
CTTCTCGAATGAATAGGTCC+CGG | 0.601529 | 1:-25488565 | None:intergenic |
AGCTCCTGTCAATTGGTACA+GGG | 0.606402 | 1:+25489732 | MsaT001735.1:CDS |
TCCACTATTGCCGATCATTG+CGG | 0.612017 | 1:+25488501 | MsaT001735.1:CDS |
TGAGGGCGAGTACAATGTCA+TGG | 0.623455 | 1:+25486603 | MsaT001735.1:CDS |
TCTGATGGGTTTAGGCCGCA+AGG | 0.624373 | 1:+25486882 | MsaT001735.1:CDS |
ACCCGTACCGCAGGGACACG+AGG | 0.630056 | 1:+25489680 | MsaT001735.1:CDS |
CTAACCACATCTTTGGAAGA+CGG | 0.637061 | 1:-25489341 | None:intergenic |
AGAGATGATCTAGAATCACT+TGG | 0.637396 | 1:+25487958 | MsaT001735.1:CDS |
TTGGATCCAGTTCTAGAACA+CGG | 0.640938 | 1:+25488731 | MsaT001735.1:CDS |
TTGGGAGGAAAATTGGAAGT+GGG | 0.646604 | 1:+25484716 | MsaT001735.1:CDS |
TAGCAGACCAAGCTCTTCTG+GGG | 0.648246 | 1:+25489559 | MsaT001735.1:CDS |
ACTACTCAGAGGGTTCAACC+AGG | 0.654494 | 1:+25489635 | MsaT001735.1:CDS |
TTGTATATGCTTCTTCAAGG+AGG | 0.656173 | 1:+25486214 | MsaT001735.1:CDS |
GTCGTCTATCGACTACTCAG+AGG | 0.661119 | 1:+25489624 | MsaT001735.1:CDS |
TCGTCTATCGACTACTCAGA+GGG | 0.669134 | 1:+25489625 | MsaT001735.1:CDS |
TTGATCAGCAAGCATCAACA+CGG | 0.671767 | 1:-25486695 | None:intergenic |
CATCCTTTACCCGTACCGCA+GGG | 0.680597 | 1:+25489672 | MsaT001735.1:CDS |
TATGCCGTCTTCCAAAGATG+TGG | 0.681158 | 1:+25489337 | MsaT001735.1:CDS |
GTAGAGTATATGCACTCTCG+GGG | 0.691454 | 1:+25486826 | MsaT001735.1:CDS |
CATCTGGAGAGCGATTAGAA+CGG | 0.692759 | 1:+25488871 | MsaT001735.1:CDS |
GCGACCACCTCGTGTCCCTG+CGG | 0.725612 | 1:-25489687 | None:intergenic |
ATAGATTATCAGGTGCAGTG+GGG | 0.730659 | 1:+25489258 | MsaT001735.1:CDS |
CGTACCGCAGGGACACGAGG+TGG | 0.738349 | 1:+25489683 | MsaT001735.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 25484682 | 25489766 | 25484682 | ID=MsaG001735 |
Chr1 | mRNA | 25484682 | 25489766 | 25484682 | ID=MsaT001735.1;Parent=MsaG001735 |
Chr1 | exon | 25484682 | 25484760 | 25484682 | ID=MsaT001735.1.exon1;Parent=MsaT001735.1 |
Chr1 | CDS | 25484682 | 25484760 | 25484682 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25484850 | 25484890 | 25484850 | ID=MsaT001735.1.exon2;Parent=MsaT001735.1 |
Chr1 | CDS | 25484850 | 25484890 | 25484850 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25486169 | 25486238 | 25486169 | ID=MsaT001735.1.exon3;Parent=MsaT001735.1 |
Chr1 | CDS | 25486169 | 25486238 | 25486169 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25486572 | 25486720 | 25486572 | ID=MsaT001735.1.exon4;Parent=MsaT001735.1 |
Chr1 | CDS | 25486572 | 25486720 | 25486572 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25486817 | 25486912 | 25486817 | ID=MsaT001735.1.exon5;Parent=MsaT001735.1 |
Chr1 | CDS | 25486817 | 25486912 | 25486817 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25487264 | 25487334 | 25487264 | ID=MsaT001735.1.exon6;Parent=MsaT001735.1 |
Chr1 | CDS | 25487264 | 25487334 | 25487264 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25487765 | 25487826 | 25487765 | ID=MsaT001735.1.exon7;Parent=MsaT001735.1 |
Chr1 | CDS | 25487765 | 25487826 | 25487765 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25487947 | 25488010 | 25487947 | ID=MsaT001735.1.exon8;Parent=MsaT001735.1 |
Chr1 | CDS | 25487947 | 25488010 | 25487947 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25488091 | 25488175 | 25488091 | ID=MsaT001735.1.exon9;Parent=MsaT001735.1 |
Chr1 | CDS | 25488091 | 25488175 | 25488091 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25488461 | 25488587 | 25488461 | ID=MsaT001735.1.exon10;Parent=MsaT001735.1 |
Chr1 | CDS | 25488461 | 25488587 | 25488461 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25488680 | 25488753 | 25488680 | ID=MsaT001735.1.exon11;Parent=MsaT001735.1 |
Chr1 | CDS | 25488680 | 25488753 | 25488680 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25488840 | 25488900 | 25488840 | ID=MsaT001735.1.exon12;Parent=MsaT001735.1 |
Chr1 | CDS | 25488840 | 25488900 | 25488840 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25489240 | 25489358 | 25489240 | ID=MsaT001735.1.exon13;Parent=MsaT001735.1 |
Chr1 | CDS | 25489240 | 25489358 | 25489240 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Chr1 | exon | 25489488 | 25489766 | 25489488 | ID=MsaT001735.1.exon14;Parent=MsaT001735.1 |
Chr1 | CDS | 25489488 | 25489766 | 25489488 | ID=cds.MsaT001735.1;Parent=MsaT001735.1 |
Gene Sequence |
Protein sequence |