AlfalfaGEDB | MsaG001743

M. sativa ssp. caerulea / MsaG001743

KEGG: K08790 K20069
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001743	XP_039690476.1	93.169	527	34	2	1	526	1	526	0.0	1018

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001743	sp\|Q9Y2H1\|ST38L_HUMAN	47.436	468	222	6	37	496	12	463	2.36e-140	416

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001743	tr\|G7I4M5\|G7I4M5_MEDTR	93.169	527	34	2	1	526	1	526	0.0	1018

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001743	MtrunA17_Chr1g0167311	93.169	527	34	2	1	526	1	526	0.0	1018
MsaG001743	MtrunA17_Chr1g0167351	81.559	526	90	3	1	524	1	521	0.0	869
MsaG001743	MtrunA17_Chr1g0187581	73.333	525	130	5	7	524	5	526	0.0	792
MsaG001743	MtrunA17_Chr1g0183651	71.180	517	139	5	1	509	1	515	0.0	728
MsaG001743	MtrunA17_Chr7g0261491	69.674	521	143	8	1	508	1	519	0.0	725
MsaG001743	MtrunA17_Chr3g0135951	62.637	455	159	5	39	483	18	471	0.0	580
MsaG001743	MtrunA17_Chr2g0299781	61.688	462	162	6	34	483	32	490	0.0	571
MsaG001743	MtrunA17_Chr1g0153321	58.263	472	187	7	42	508	35	501	0.0	563
MsaG001743	MtrunA17_Chr6g0478601	37.436	390	223	6	54	442	59	428	1.06e-82	266
MsaG001743	MtrunA17_Chr4g0018201	39.541	392	211	11	54	442	706	1074	5.54e-77	263

Showing 1 to 10 of 293 entries

Previous1 2 3 4 5…30Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG001743	AT3G23310.1	76.016	492	112	4	34	520	39	529	780
MsaG001743	AT4G14350.2	75.510	490	116	3	34	520	38	526	768
MsaG001743	AT4G14350.3	75.510	490	116	3	34	520	38	526	768
MsaG001743	AT4G14350.1	75.510	490	116	3	34	520	38	526	768
MsaG001743	AT4G14350.4	75.510	490	116	3	34	520	38	526	768
MsaG001743	AT2G20470.3	65.511	519	165	6	1	508	1	516	703
MsaG001743	AT2G20470.2	65.259	521	167	6	1	510	1	518	703
MsaG001743	AT2G20470.1	65.259	521	167	6	1	510	1	518	703
MsaG001743	AT1G03920.1	69.979	473	137	4	36	505	58	528	674
MsaG001743	AT1G03920.3	69.979	473	137	4	36	505	58	528	674

Showing 1 to 10 of 501 entries

Previous1 2 3 4 5…51Next

Find 126 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAAACTATCACCAG+AGG	0.654056	1:-25699236	MsaT001743.1:CDS
AAACACTGAAGATCATTTGA+CGG	0.531335	1:+25701661	None:intergenic
AAATCAGAGATGCTTCGTAG+AGG	0.680348	1:-25700977	MsaT001743.1:CDS
AAATGGAAGCTGCAAGGCGC+TGG	0.485731	1:-25701723	MsaT001743.1:CDS
AAATTTCGAGAAATTTCAAG+AGG	0.602505	1:-25698973	MsaT001743.1:intron
AACACTGAAGATCATTTGAC+GGG	0.511724	1:+25701662	None:intergenic
AACAGCAGAAACTGGAGCAT+TGG	0.520928	1:-25700236	MsaT001743.1:CDS
AACGTCATCATATCTCCACC+GGG	0.657380	1:+25700754	None:intergenic
AACTTCTGGAGCAATATAAT+TGG	0.220944	1:+25699764	None:intergenic
AACTTGCTTCTGGATAGAAA+TGG	0.545939	1:-25700396	MsaT001743.1:CDS

Showing 1 to 10 of 126 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	25697310	25701743	25697310	ID=MsaG001743
Chr1	mRNA	25697310	25701743	25697310	ID=MsaT001743.1;Parent=MsaG001743
Chr1	exon	25697310	25697368	25697310	ID=MsaT001743.1.exon13;Parent=MsaT001743.1
Chr1	CDS	25697310	25697368	25697310	ID=cds.MsaT001743.1;Parent=MsaT001743.1
Chr1	exon	25697495	25697545	25697495	ID=MsaT001743.1.exon12;Parent=MsaT001743.1
Chr1	CDS	25697495	25697545	25697495	ID=cds.MsaT001743.1;Parent=MsaT001743.1
Chr1	exon	25698182	25698266	25698182	ID=MsaT001743.1.exon11;Parent=MsaT001743.1
Chr1	CDS	25698182	25698266	25698182	ID=cds.MsaT001743.1;Parent=MsaT001743.1
Chr1	exon	25698824	25698871	25698824	ID=MsaT001743.1.exon10;Parent=MsaT001743.1
Chr1	CDS	25698824	25698871	25698824	ID=cds.MsaT001743.1;Parent=MsaT001743.1
Chr1	exon	25698974	25699087	25698974	ID=MsaT001743.1.exon9;Parent=MsaT001743.1
Chr1	CDS	25698974	25699087	25698974	ID=cds.MsaT001743.1;Parent=MsaT001743.1
Chr1	exon	25699162	25699290	25699162	ID=MsaT001743.1.exon8;Parent=MsaT001743.1
Chr1	CDS	25699162	25699290	25699162	ID=cds.MsaT001743.1;Parent=MsaT001743.1
Chr1	exon	25699555	25699639	25699555	ID=MsaT001743.1.exon7;Parent=MsaT001743.1
Chr1	CDS	25699555	25699639	25699555	ID=cds.MsaT001743.1;Parent=MsaT001743.1
Chr1	exon	25699729	25699808	25699729	ID=MsaT001743.1.exon6;Parent=MsaT001743.1
Chr1	CDS	25699729	25699808	25699729	ID=cds.MsaT001743.1;Parent=MsaT001743.1
Chr1	exon	25700212	25700434	25700212	ID=MsaT001743.1.exon5;Parent=MsaT001743.1
Chr1	CDS	25700212	25700434	25700212	ID=cds.MsaT001743.1;Parent=MsaT001743.1
Chr1	exon	25700652	25700893	25700652	ID=MsaT001743.1.exon4;Parent=MsaT001743.1
Chr1	CDS	25700652	25700893	25700652	ID=cds.MsaT001743.1;Parent=MsaT001743.1
Chr1	exon	25700973	25701056	25700973	ID=MsaT001743.1.exon3;Parent=MsaT001743.1
Chr1	CDS	25700973	25701056	25700973	ID=cds.MsaT001743.1;Parent=MsaT001743.1
Chr1	exon	25701184	25701358	25701184	ID=MsaT001743.1.exon2;Parent=MsaT001743.1
Chr1	CDS	25701184	25701358	25701184	ID=cds.MsaT001743.1;Parent=MsaT001743.1
Chr1	exon	25701535	25701743	25701535	ID=MsaT001743.1.exon1;Parent=MsaT001743.1
Chr1	CDS	25701535	25701743	25701535	ID=cds.MsaT001743.1;Parent=MsaT001743.1

Gene Sequence

>MsaT001743.1

ATGGAAGCTGCAAGGCGCTGGTTTAGAAAGCGTTGGTTAAAAAAGAAGGAAGCTGCAAGCCCGTCAAATGATCTTCAGTGTTTGGCGCTGGACGTAGTAAATGAGGAACCACCTTCAAATGAAACTAAACTGAAGGTTGAAGCTGCGAAGCATTTCGTAGAAAGGTATTATAAGAACCAGAAGCAGATCCAGCAGGAGAGGATAGAAAGACGTAATATTCTAGAAAACAAATTGGCCGATGCTGAAGTATCCAAGGAAGACAAGAAAAATTTGCTTAAGAATTTTGAGGAAAAGGAGACAGAAATCATGCGCCGTCAGAGACTTAAGATGGGTGCTGATGACTTTGAGCCCCTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTTAGAATCTGCCGAGAGAAGACAACTGGTCAGGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGTAGAGGACAGGTTGAATATGTCAAATCTGAAAGGAACCTTCTTGCAGAAGTTGATAGCAATTGCATTGTAAAACTTTATTGTTCCTTTCAAGATGACGAGTATTTATACCTCATAATGGAATATCTACCCGGTGGAGATATGATGACGTTGCTGATGCGGAAAGAAGTACTGACTGAAGATGAAGCTAAGTTCTACATCGGGGAGACTGTGCTAGCCATTGAGTCTATTCATAAACATAATTATATTCATAGAGATATCAAGCCCGACAACTTGCTTCTGGATAGAAATGGTCACGTGAAATTATCAGATTTTGGATTATGTAAGCCGCTAGACTGCAGTAACCTTCAGGAAAAAGACTTATCTGATGGAGTTAACAGAAGTGGAGTCCATCAAAGTGATGAACTTGCTTTATCTCCTAACCAATCTCAACAGCAGAAACTGGAGCATTGGCGGAAAAATCGTAGCAGAATGCTGGCCTATTCTACGGTTGGAACACCCAATTATATTGCTCCAGAAGTTATTCTGAAGAGAGGATATGGCGTGGAATGTGATTGGTGGTCTCTTGGAGTCATAATGTATGAAATGCTTGTGGGGTATCCACCATTTCATTCAGATGATACAAAGACAACGTGTCGAAAGATAGCACATTGGAAAACTTACTTAAAATTTCCAAAAGATAAACTATCACCAGAGGCAAAGGATCTTATTTGTCGTCTCCTATGTAATGCGAAGCAGAGGCTTGGAGCTAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGTAGTTGAATGGGAGAAATTGTACCAAATGAGAGCTCCTTTTATTCCTAAGGTCAATGATGAATTGGATACTCAAAATTTCGAGAAATTTCAAGAGGAGGACCAGCAAACTGAACCTTCGCCTAAGGCAGGGCCGTGGAGAAAGATGCTTCTATCTAAAGATATTAACTTTGTTGGTTACACATACAAGAATTATGAAATGGTGGATGTAAATGCAATACCCGGATATGTTGAACTGAAGAAGTCAAAACCTAAAAGGCCATCTATCAAGTCCTTATTTGAGGATGAATCAGCTAAGGCAGCTTCTTCTCATCAACCAGCTAGAGGGAAAGAAAATTGA

Protein sequence

>MsaT001743.1

MEAARRWFRKRWLKKKEAASPSNDLQCLALDVVNEEPPSNETKLKVEAAKHFVERYYKNQKQIQQERIERRNILENKLADAEVSKEDKKNLLKNFEEKETEIMRRQRLKMGADDFEPLTMIGKGAFGEVRICREKTTGQVYAMKKLKKSEMLRRGQVEYVKSERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKEVLTEDEAKFYIGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHVKLSDFGLCKPLDCSNLQEKDLSDGVNRSGVHQSDELALSPNQSQQQKLEHWRKNRSRMLAYSTVGTPNYIAPEVILKRGYGVECDWWSLGVIMYEMLVGYPPFHSDDTKTTCRKIAHWKTYLKFPKDKLSPEAKDLICRLLCNAKQRLGAKGADEIKAHPWFKVVEWEKLYQMRAPFIPKVNDELDTQNFEKFQEEDQQTEPSPKAGPWRKMLLSKDINFVGYTYKNYEMVDVNAIPGYVELKKSKPKRPSIKSLFEDESAKAASSHQPARGKEN*