AlfalfaGEDB | MsaG001756

M. sativa ssp. caerulea / MsaG001756

KEGG: K07760
GO: GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234
PFAM: PF00069.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001756	XP_003590823.1	89.247	93	10	0	1	93	1	93	2.47e-47	163

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001756	sp\|Q8LF80\|CKB21_ARATH	77.381	84	19	0	10	93	6	89	5.79e-38	132

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001756	tr\|G7I4T8\|G7I4T8_MEDTR	89.247	93	10	0	1	93	1	93	1.18e-47	163

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000181	MsaG001756	0.811212	1.343335e-50	2.362974e-48
MsaG000706	MsaG001756	0.828620	1.454902e-54	4.048494e-52
MsaG000796	MsaG001756	0.829867	7.273503e-55	2.097050e-52
MsaG001037	MsaG001756	0.811125	1.403037e-50	2.462667e-48
MsaG001055	MsaG001756	0.801988	1.164931e-48	1.647522e-46
MsaG001224	MsaG001756	0.816158	1.108149e-51	2.206032e-49
MsaG002646	MsaG001756	0.824126	1.691351e-53	4.154356e-51
MsaG003688	MsaG001756	0.854766	1.910467e-61	1.223918e-58
MsaG004025	MsaG001756	0.812462	7.200995e-51	1.306283e-48
MsaG004045	MsaG001756	0.824887	1.121902e-53	2.813441e-51
MsaG004413	MsaG001756	0.815801	1.329856e-51	2.623442e-49
MsaG005408	MsaG001756	0.801932	1.196183e-48	1.689580e-46
MsaG005420	MsaG001756	0.825931	6.365929e-54	1.643227e-51
MsaG005937	MsaG001756	0.806349	1.455640e-49	2.277768e-47
MsaG006085	MsaG001756	0.802139	1.085064e-48	1.539829e-46
MsaG006760	MsaG001756	0.823313	2.616290e-53	6.286105e-51
MsaG007204	MsaG001756	0.801945	1.189009e-48	1.679930e-46
MsaG007841	MsaG001756	0.808380	5.427118e-50	8.912756e-48
MsaG008412	MsaG001756	0.813374	4.555797e-51	8.454206e-49
MsaG009640	MsaG001756	0.813419	4.452785e-51	8.272575e-49
MsaG012081	MsaG001756	0.833330	1.028988e-55	3.279843e-53
MsaG012529	MsaG001756	0.802580	8.812466e-49	1.263330e-46
MsaG043564	MsaG001756	0.816969	7.308714e-52	1.485529e-49
MsaG044881	MsaG001756	0.817398	5.858421e-52	1.203983e-49
MsaG045632	MsaG001756	0.810747	1.692625e-50	2.943573e-48
MsaG045811	MsaG001756	0.807273	9.303670e-50	1.487869e-47
MsaG045911	MsaG001756	0.805965	1.752203e-49	2.716909e-47
MsaG046018	MsaG001756	0.801762	1.296144e-48	1.823677e-46
MsaG046203	MsaG001756	0.812411	7.388587e-51	1.338585e-48
MsaG046670	MsaG001756	0.806966	1.079920e-49	1.714555e-47
MsaG046782	MsaG001756	0.824218	1.609758e-53	3.963706e-51
MsaG046865	MsaG001756	0.808582	4.915536e-50	8.112207e-48
MsaG000283	MsaG001756	0.800178	2.720801e-48	3.693398e-46
MsaG003078	MsaG001756	0.801020	1.835784e-48	2.539884e-46
MsaG001756	MsaG000001	0.932465	2.269501e-94	1.133725e-89
MsaG001756	MsaG008743	0.822328	4.425014e-53	1.035296e-50
MsaG001756	MsaG007870	0.804261	3.966396e-49	5.911249e-47
MsaG001756	MsaG018216	0.827093	3.375103e-54	8.997858e-52
MsaG001756	MsaG029909	0.832608	1.552825e-55	4.845978e-53
MsaG001756	MsaG027840	0.812990	5.526041e-51	1.015682e-48
MsaG001756	MsaG032991	0.817384	5.901052e-52	1.212315e-49
MsaG001756	MsaG032354	0.800637	2.196314e-48	3.012646e-46
MsaG001756	MsaG031490	0.843451	2.592893e-58	1.129627e-55
MsaG001756	MsaG031602	0.821430	7.125056e-53	1.627463e-50
MsaG001756	MsaG031607	0.815633	1.449226e-51	2.846803e-49
MsaG001756	MsaG036962	0.820383	1.237589e-52	2.749714e-50
MsaG001756	MsaG037527	0.823033	3.039283e-53	7.247252e-51
MsaG001756	MsaG041372	0.801382	1.549544e-48	2.161491e-46
MsaG015993	MsaG001756	0.823157	2.844474e-53	6.805321e-51
MsaG016512	MsaG001756	0.805906	1.802681e-49	2.791325e-47
MsaG016529	MsaG001756	0.820546	1.135943e-52	2.534764e-50
MsaG016976	MsaG001756	0.812961	5.608031e-51	1.029992e-48
MsaG017119	MsaG001756	0.836680	1.486387e-56	5.236171e-54
MsaG017114	MsaG001756	0.809688	2.855894e-50	4.840457e-48
MsaG017187	MsaG001756	0.834102	6.613139e-56	2.156346e-53
MsaG018425	MsaG001756	0.800388	2.466559e-48	3.364329e-46
MsaG018437	MsaG001756	0.816951	7.377194e-52	1.498729e-49
MsaG018659	MsaG001756	0.802282	1.014438e-48	1.444349e-46
MsaG018676	MsaG001756	0.802147	1.080825e-48	1.534117e-46
MsaG020149	MsaG001756	0.809661	2.894401e-50	4.902500e-48
MsaG020750	MsaG001756	0.804426	3.666339e-49	5.484837e-47
MsaG021034	MsaG001756	0.835793	2.491222e-56	8.545034e-54
MsaG023950	MsaG001756	0.807492	8.364097e-50	1.344649e-47
MsaG024161	MsaG001756	0.831349	3.167317e-55	9.528126e-53
MsaG024615	MsaG001756	0.801306	1.605334e-48	2.235464e-46
MsaG027825	MsaG001756	0.819881	1.610629e-52	3.531132e-50
MsaG028620	MsaG001756	0.804416	3.684242e-49	5.510350e-47
MsaG028754	MsaG001756	0.805443	2.251870e-49	3.449302e-47
MsaG029469	MsaG001756	0.818133	4.005528e-52	8.389183e-50
MsaG029577	MsaG001756	0.803007	7.201716e-49	1.042567e-46
MsaG030014	MsaG001756	0.824996	1.057429e-53	2.659709e-51
MsaG030595	MsaG001756	0.822544	3.944557e-53	9.282470e-51
MsaG030681	MsaG001756	0.819324	2.156067e-52	4.658290e-50
MsaG032180	MsaG001756	0.800320	2.545974e-48	3.467235e-46
MsaG033372	MsaG001756	0.809031	3.944687e-50	6.580786e-48
MsaG034954	MsaG001756	0.831776	2.487887e-55	7.579399e-53
MsaG035522	MsaG001756	0.811289	1.293108e-50	2.278914e-48
MsaG039808	MsaG001756	0.812446	7.257933e-51	1.316079e-48
MsaG040923	MsaG001756	0.806844	1.145928e-49	1.814088e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001756	MtrunA17_Chr1g0187371	89.247	93	10	0	1	93	1	93	2.27e-51	163
MsaG001756	MtrunA17_Chr4g0002001	67.143	70	23	0	18	87	4	73	1.26e-25	97.1
MsaG001756	MtrunA17_Chr4g0051261	53.731	67	30	1	18	84	4	69	6.91e-18	76.3
MsaG001756	MtrunA17_Chr2g0293491	52.239	67	31	1	18	84	4	69	4.49e-17	73.9
MsaG001756	MtrunA17_Chr3g0093571	52.239	67	31	1	18	84	25	90	1.56e-15	70.5
MsaG001756	MtrunA17_Chr3g0093391	50.746	67	32	1	18	84	23	88	2.00e-15	70.1
MsaG001756	MtrunA17_Chr4g0061141	50.769	65	31	1	17	81	104	167	2.47e-12	61.2
MsaG001756	MtrunA17_Chr8g0385971	50.000	64	31	1	18	81	90	152	3.22e-12	60.8
MsaG001756	MtrunA17_Chr2g0286421	47.436	78	39	2	5	81	88	164	4.97e-12	60.5
MsaG001756	MtrunA17_Chr7g0218071	48.718	78	38	2	5	81	106	182	5.18e-12	60.5
MsaG001756	MtrunA17_Chr4g0057791	49.123	57	29	0	18	74	218	274	1.19e-11	59.3
MsaG001756	MtrunA17_Chr4g0066691	47.692	65	33	1	17	81	103	166	1.84e-11	58.9
MsaG001756	MtrunA17_Chr3g0131861	48.485	66	33	1	16	81	95	159	2.56e-11	58.5
MsaG001756	MtrunA17_Chr6g0453711	46.154	65	34	1	17	81	109	172	4.36e-11	57.8
MsaG001756	MtrunA17_Chr1g0191221	48.438	64	32	1	18	81	122	184	4.48e-11	57.8
MsaG001756	MtrunA17_Chr2g0317501	49.231	65	32	1	17	81	133	196	6.58e-11	57.4
MsaG001756	MtrunA17_Chr7g0273601	46.875	64	33	1	18	81	107	169	9.63e-11	57.0
MsaG001756	MtrunA17_Chr1g0201571	40.506	79	45	2	4	81	111	188	9.85e-11	56.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001756	AT1G76540.1	77.381	84	19	0	10	93	6	89	5.88e-39	132
MsaG001756	AT1G20930.1	78.049	82	18	0	12	93	10	91	1.79e-38	130
MsaG001756	AT2G38620.3	61.250	80	29	1	18	97	4	81	1.00e-25	96.7
MsaG001756	AT2G38620.1	61.250	80	29	1	18	97	4	81	1.00e-25	96.7
MsaG001756	AT2G38620.2	61.250	80	29	1	18	97	4	81	3.37e-25	96.3
MsaG001756	AT3G54180.1	66.197	71	24	0	18	88	4	74	1.77e-24	94.4
MsaG001756	AT5G10270.1	48.052	77	36	1	18	94	26	98	3.93e-17	75.5
MsaG001756	AT5G64960.1	48.052	77	36	1	18	94	26	98	4.43e-17	75.1
MsaG001756	AT3G48750.1	52.239	67	31	1	18	84	4	69	5.15e-17	74.3
MsaG001756	AT1G67580.1	50.000	70	31	2	18	87	406	471	1.42e-13	65.5
MsaG001756	AT1G67580.2	50.000	70	31	2	18	87	406	471	1.42e-13	65.5
MsaG001756	AT1G18670.2	52.308	65	30	1	17	81	130	193	2.50e-13	64.7
MsaG001756	AT1G18670.3	52.308	65	30	1	17	81	130	193	3.18e-13	64.3
MsaG001756	AT1G18670.1	52.308	65	30	1	17	81	130	193	3.47e-13	64.3
MsaG001756	AT1G71530.4	50.000	66	32	1	16	81	145	209	2.36e-12	61.6
MsaG001756	AT1G71530.3	50.000	66	32	1	16	81	145	209	2.73e-12	61.6
MsaG001756	AT4G10010.2	47.436	78	39	2	5	81	142	218	2.88e-12	61.6
MsaG001756	AT1G71530.2	50.000	66	32	1	16	81	145	209	3.44e-12	61.2
MsaG001756	AT1G74330.3	50.769	65	31	1	17	81	120	183	3.60e-12	61.2
MsaG001756	AT1G66750.1	51.667	60	28	1	24	83	19	77	3.74e-12	61.2
MsaG001756	AT1G33770.1	50.769	65	31	1	17	81	140	203	4.06e-12	61.2
MsaG001756	AT1G74330.1	50.769	65	31	1	17	81	120	183	4.31e-12	61.2
MsaG001756	AT1G74330.2	50.769	65	31	1	17	81	120	183	4.39e-12	61.2
MsaG001756	AT1G71530.1	50.000	66	32	1	16	81	145	209	9.72e-12	60.1
MsaG001756	AT3G05050.3	43.590	78	42	2	5	81	124	200	9.73e-12	60.1
MsaG001756	AT3G05050.2	43.590	78	42	2	5	81	124	200	9.73e-12	60.1
MsaG001756	AT3G05050.1	43.590	78	42	2	5	81	124	200	9.73e-12	60.1
MsaG001756	AT5G39420.1	47.143	70	28	3	16	81	103	167	1.13e-11	59.7
MsaG001756	AT2G38620.4	74.359	39	10	0	18	56	4	42	1.92e-11	58.5
MsaG001756	AT1G57700.1	50.769	65	31	1	17	81	145	208	2.23e-11	58.9
MsaG001756	AT1G03740.2	50.000	64	31	1	18	81	213	275	3.53e-11	58.5
MsaG001756	AT1G09600.1	49.231	65	32	1	17	81	162	225	3.78e-11	58.5
MsaG001756	AT5G63370.5	41.860	86	44	3	4	84	282	366	3.92e-11	58.2
MsaG001756	AT5G63370.10	41.860	86	44	3	4	84	282	366	3.92e-11	58.2
MsaG001756	AT5G63370.7	41.860	86	44	3	4	84	282	366	4.91e-11	58.2
MsaG001756	AT5G63370.8	41.860	86	44	3	4	84	282	366	4.91e-11	58.2
MsaG001756	AT5G63370.4	41.860	86	44	3	4	84	282	366	4.91e-11	58.2
MsaG001756	AT5G63370.6	41.860	86	44	3	4	84	282	366	4.91e-11	58.2
MsaG001756	AT5G63370.1	41.860	86	44	3	4	84	282	366	4.91e-11	58.2
MsaG001756	AT5G50860.1	44.444	72	37	2	12	81	106	176	5.23e-11	58.2
MsaG001756	AT1G03740.1	50.000	64	31	1	18	81	213	275	5.77e-11	57.8
MsaG001756	AT5G63370.9	45.070	71	34	2	18	84	163	232	6.80e-11	57.8
MsaG001756	AT5G63370.2	45.070	71	34	2	18	84	163	232	7.65e-11	57.4
MsaG001756	AT5G63370.3	45.070	71	34	2	18	84	163	232	7.65e-11	57.4
MsaG001756	AT1G54610.1	48.438	64	32	1	18	81	118	180	8.26e-11	57.4
MsaG001756	AT1G54610.3	48.438	64	32	1	18	81	118	180	8.26e-11	57.4
MsaG001756	AT1G54610.2	48.438	64	32	1	18	81	118	180	8.26e-11	57.4

Find 20 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGGGATAACTGTGTTGTATT+TGG	0.270067	1:-25845436	MsaT001756.1:CDS
TGTTGGATGTGAAACAATTA+AGG	0.332045	1:-25845471	MsaT001756.1:CDS
AACTACTGCGATTGTTTCAC+CGG	0.429923	1:+25845790	None:intergenic
CTCATGATCCACATGTTGTT+AGG	0.436119	1:-25845583	MsaT001756.1:intron
GAAACCTCGCGAAGCGTAGT+AGG	0.445811	1:+25845623	None:intergenic
AGAGCAAGAGAGAAAGCTAC+TGG	0.475204	1:-25845701	MsaT001756.1:CDS
TTCGAGAAGCTCGAGAAAGT+TGG	0.501777	1:-25845749	MsaT001756.1:CDS
TCCTCCTACTACGCTTCGCG+AGG	0.556697	1:-25845627	MsaT001756.1:CDS
GAGAAGCTCGAGAAAGTTGG+AGG	0.563232	1:-25845746	MsaT001756.1:CDS
AATTAAGGACAGAACAAGGA+AGG	0.564998	1:-25845456	MsaT001756.1:CDS
CGTCTTCATGAAGATGATGA+AGG	0.573237	1:-25845653	MsaT001756.1:CDS
ACCTCGCGAAGCGTAGTAGG+AGG	0.577549	1:+25845626	None:intergenic
AAGCTCGAGAAAGTTGGAGG+AGG	0.601692	1:-25845743	MsaT001756.1:CDS
TTAACTTACCTAACAACATG+TGG	0.608876	1:+25845575	None:intergenic
ATTAAGGACAGAACAAGGAA+GGG	0.628262	1:-25845455	MsaT001756.1:CDS
GAGCAAGAGAGAAAGCTACT+GGG	0.629277	1:-25845700	MsaT001756.1:CDS
TGGAGGAGGAACGTACGAGA+AGG	0.635343	1:-25845729	MsaT001756.1:CDS
AAACAATTAAGGACAGAACA+AGG	0.651168	1:-25845460	MsaT001756.1:CDS
GATTCAATCATGGAGAAACC+CGG	0.652544	1:-25845809	None:intergenic
ACTACTGCGATTGTTTCACC+GGG	0.654995	1:+25845791	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	25845429	25845822	25845429	ID=MsaG001756
Chr1	mRNA	25845429	25845822	25845429	ID=MsaT001756.1;Parent=MsaG001756
Chr1	exon	25845429	25845495	25845429	ID=MsaT001756.1.exon2;Parent=MsaT001756.1
Chr1	CDS	25845429	25845495	25845429	ID=cds.MsaT001756.1;Parent=MsaT001756.1
Chr1	exon	25845584	25845822	25845584	ID=MsaT001756.1.exon1;Parent=MsaT001756.1
Chr1	CDS	25845584	25845822	25845584	ID=cds.MsaT001756.1;Parent=MsaT001756.1

Gene Sequence	>MsaT001756.1 ATGGAGAAACCCGGTGAAACAATCGCAGTAGTTTTATCGGCGAAGAAAGCATTCGAGAAGCTCGAGAAAGTTGGAGGAGGAACGTACGAGAAGGTTTACAGAGCAAGAGAGAAAGCTACTGGGAAGATTGTTGCGTTGAAGAAGACTCGTCTTCATGAAGATGATGAAGGTGTTCCTCCTACTACGCTTCGCGAGGTTTCGATTTTGCGTATGCTCTCTCATGATCCACATGTTGTTAGGTTGTTGGATGTGAAACAATTAAGGACAGAACAAGGAAGGGATAACTGTGTTGTATTTGGTTTTTGA
Protein sequence	>MsaT001756.1 MEKPGETIAVVLSAKKAFEKLEKVGGGTYEKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSHDPHVVRLLDVKQLRTEQGRDNCVVFGF*