AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG001765


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001765 MtrunA17_Chr1g0167691 98.851 87 1 0 1 87 1 87 2.19e-61 191
MsaG001765 MtrunA17_Chr1g0167691 77.953 127 22 3 62 187 134 255 8.77e-56 177
MsaG001765 MtrunA17_Chr1g0167661 93.103 87 6 0 1 87 1 87 2.34e-56 178
MsaG001765 MtrunA17_Chr1g0167661 73.267 101 20 2 88 187 160 254 3.50e-44 147
MsaG001765 MtrunA17_Chr1g0187761 87.356 87 11 0 1 87 1 87 2.68e-54 173
MsaG001765 MtrunA17_Chr1g0187761 51.282 78 37 1 111 187 181 258 2.75e-17 77.0
MsaG001765 MtrunA17_Chr7g0261281 78.161 87 19 0 1 87 1 87 5.46e-48 157
MsaG001765 MtrunA17_Chr7g0274581 42.233 206 92 5 1 180 1 205 1.72e-47 154
MsaG001765 MtrunA17_Chr1g0203411 73.563 87 23 0 1 87 1 87 7.28e-45 150
MsaG001765 MtrunA17_Chr4g0039971 72.414 87 24 0 1 87 2 88 6.48e-43 146
MsaG001765 MtrunA17_Chr2g0281071 73.864 88 22 1 1 87 1 88 6.32e-42 144
MsaG001765 MtrunA17_Chr4g0048511 73.864 88 22 1 1 87 1 88 7.99e-42 144
MsaG001765 MtrunA17_Chr6g0453471 70.115 87 26 0 1 87 1 87 1.03e-41 143
MsaG001765 MtrunA17_Chr7g0217741 71.264 87 25 0 1 87 1 87 1.44e-41 142
MsaG001765 MtrunA17_Chr2g0323411 72.414 87 24 0 1 87 1 87 1.83e-41 142
MsaG001765 MtrunA17_Chr2g0294811 71.264 87 25 0 1 87 1 87 1.95e-41 135
MsaG001765 MtrunA17_Chr4g0068061 71.264 87 25 0 1 87 1 87 2.15e-41 142
MsaG001765 MtrunA17_Chr3g0115821 68.966 87 27 0 1 87 1 87 4.83e-41 141
MsaG001765 MtrunA17_Chr2g0311221 69.412 85 26 0 3 87 5 89 6.14e-41 140
MsaG001765 MtrunA17_Chr2g0323351 70.115 87 26 0 1 87 1 87 1.29e-40 137
MsaG001765 MtrunA17_Chr4g0042671 70.115 87 26 0 1 87 1 87 2.17e-40 141
MsaG001765 MtrunA17_Chr8g0346561 65.517 87 30 0 1 87 1 87 3.72e-40 138
MsaG001765 MtrunA17_Chr4g0022891 68.966 87 27 0 1 87 1 87 4.16e-40 136
MsaG001765 MtrunA17_Chr4g0042611 67.816 87 28 0 1 87 1 87 7.49e-40 130
MsaG001765 MtrunA17_Chr7g0275911 65.517 87 30 0 1 87 1 87 7.73e-40 136
MsaG001765 MtrunA17_Chr5g0410961 68.966 87 27 0 1 87 1 87 1.52e-39 137
MsaG001765 MtrunA17_Chr4g0037141 68.966 87 27 0 1 87 1 87 5.77e-39 134
MsaG001765 MtrunA17_Chr1g0194951 66.667 87 29 0 1 87 1 87 8.59e-39 136
MsaG001765 MtrunA17_Chr6g0453211 65.517 87 30 0 1 87 1 87 8.88e-39 135
MsaG001765 MtrunA17_Chr4g0070641 64.368 87 31 0 1 87 1 87 1.78e-38 130
MsaG001765 MtrunA17_Chr4g0070611 64.368 87 31 0 1 87 1 87 2.37e-38 133
MsaG001765 MtrunA17_Chr4g0022931 64.773 88 30 1 1 87 1 88 4.57e-38 132
MsaG001765 MtrunA17_Chr8g0349261 67.416 89 27 2 1 87 1 89 5.52e-38 132
MsaG001765 MtrunA17_Chr4g0022901 64.773 88 30 1 1 87 1 88 7.90e-38 131
MsaG001765 MtrunA17_Chr2g0323321 64.368 87 30 1 1 87 1 86 1.07e-37 126
MsaG001765 MtrunA17_Chr5g0395281 66.667 87 29 0 1 87 1 87 1.18e-37 131
MsaG001765 MtrunA17_Chr3g0092401 65.517 87 30 0 1 87 2 88 1.27e-37 131
MsaG001765 MtrunA17_Chr3g0121241 63.855 83 30 0 5 87 35 117 1.45e-37 131
MsaG001765 MtrunA17_Chr4g0060721 63.218 87 32 0 1 87 2 88 8.02e-37 130
MsaG001765 MtrunA17_Chr7g0269831 73.563 87 23 0 1 87 1 87 8.10e-37 130
MsaG001765 MtrunA17_Chr3g0131121 65.517 87 30 0 1 87 1 87 9.04e-37 129
MsaG001765 MtrunA17_Chr7g0217221 63.218 87 32 0 1 87 1 87 1.16e-36 128
MsaG001765 MtrunA17_Chr4g0022911 61.364 88 33 1 1 87 1 88 1.19e-36 129
MsaG001765 MtrunA17_Chr3g0103281 63.218 87 32 0 1 87 1 87 2.39e-36 129
MsaG001765 MtrunA17_Chr7g0228891 63.218 87 32 0 1 87 1 87 3.32e-36 127
MsaG001765 MtrunA17_Chr4g0022881 59.770 87 35 0 1 87 1 87 8.59e-36 125
MsaG001765 MtrunA17_Chr8g0385321 63.218 87 32 0 1 87 1 87 1.13e-35 127
MsaG001765 MtrunA17_Chr5g0395221 64.368 87 31 0 1 87 1 87 2.31e-35 119
MsaG001765 MtrunA17_Chr3g0110351 63.218 87 32 0 1 87 1 87 5.57e-35 125
MsaG001765 MtrunA17_Chr7g0254411 64.368 87 31 0 1 87 1 87 6.87e-35 125
MsaG001765 MtrunA17_Chr1g0193371 63.218 87 32 0 1 87 1 87 1.17e-34 125
MsaG001765 MtrunA17_Chr7g0271241 63.218 87 32 0 1 87 1 87 1.29e-34 125
MsaG001765 MtrunA17_Chr5g0434571 63.218 87 32 0 1 87 37 123 1.49e-34 124
MsaG001765 MtrunA17_Chr7g0270891 62.069 87 33 0 1 87 1 87 8.91e-34 122
MsaG001765 MtrunA17_Chr4g0057031 59.770 87 35 0 1 87 1 87 1.30e-33 120
MsaG001765 MtrunA17_Chr1g0193801 60.920 87 34 0 1 87 1 87 1.70e-33 122
MsaG001765 MtrunA17_Chr8g0342511 56.180 89 39 0 1 89 1 89 4.59e-33 114
MsaG001765 MtrunA17_Chr5g0417821 66.234 77 26 0 11 87 6 82 4.91e-33 119
MsaG001765 MtrunA17_Chr5g0435101 58.140 86 36 0 2 87 1 86 7.63e-33 117
MsaG001765 MtrunA17_Chr1g0151941 56.818 88 37 1 1 87 1 88 9.92e-33 117
MsaG001765 MtrunA17_Chr2g0309911 59.756 82 33 0 6 87 5 86 2.07e-32 118
MsaG001765 MtrunA17_Chr4g0058631 59.770 87 35 0 1 87 1 87 7.58e-32 117
MsaG001765 MtrunA17_Chr8g0342531 56.322 87 38 0 1 87 1 87 7.68e-32 112
MsaG001765 MtrunA17_Chr2g0327351 58.621 87 35 1 1 86 1 87 1.18e-31 116
MsaG001765 MtrunA17_Chr1g0152011 58.621 87 35 1 1 86 1 87 6.85e-31 114
MsaG001765 MtrunA17_Chr7g0264641 56.818 88 37 1 1 87 1 88 7.65e-31 113
MsaG001765 MtrunA17_Chr8g0342541 56.322 87 38 0 1 87 1 87 8.55e-31 114
MsaG001765 MtrunA17_Chr4g0054391 56.322 87 37 1 1 86 1 87 8.75e-31 113
MsaG001765 MtrunA17_Chr5g0400821 58.621 87 35 1 1 86 1 87 9.35e-31 114
MsaG001765 MtrunA17_Chr2g0330041 57.471 87 37 0 1 87 1 87 9.42e-31 115
MsaG001765 MtrunA17_Chr4g0044421 60.920 87 33 1 2 87 1 87 1.18e-30 110
MsaG001765 MtrunA17_Chr4g0028311 57.471 87 36 1 1 86 1 87 1.47e-30 113
MsaG001765 MtrunA17_Chr6g0452271 55.814 86 38 0 1 86 1 86 2.08e-30 113
MsaG001765 MtrunA17_Chr3g0117091 59.770 87 35 0 1 87 1 87 3.38e-30 113
MsaG001765 MtrunA17_Chr1g0211161 58.824 85 35 0 3 87 4 88 5.32e-30 110
MsaG001765 MtrunA17_Chr3g0135311 55.682 88 38 1 1 87 1 88 5.52e-30 112
MsaG001765 MtrunA17_Chr8g0342521 55.172 87 39 0 1 87 1 87 5.67e-30 112
MsaG001765 MtrunA17_Chr6g0487491 55.172 87 38 1 1 86 1 87 5.82e-30 110
MsaG001765 MtrunA17_Chr5g0397231 55.172 87 39 0 1 87 1 87 6.36e-30 112
MsaG001765 MtrunA17_Chr4g0072751 57.471 87 36 1 1 86 1 87 8.08e-30 112
MsaG001765 MtrunA17_Chr8g0387421 54.023 87 40 0 1 87 1 87 1.03e-29 111
MsaG001765 MtrunA17_Chr8g0342461 55.682 88 38 1 1 87 1 88 1.03e-29 106
MsaG001765 MtrunA17_Chr3g0099141 59.211 76 31 0 12 87 40 115 1.58e-29 106
MsaG001765 MtrunA17_Chr8g0342471 55.682 88 38 1 1 87 1 88 3.86e-29 105
MsaG001765 MtrunA17_Chr1g0209661 57.500 80 34 0 8 87 23 102 1.34e-28 108
MsaG001765 MtrunA17_Chr3g0080861 57.895 76 32 0 12 87 37 112 5.32e-28 109
MsaG001765 MtrunA17_Chr8g0354661 59.211 76 31 0 12 87 37 112 5.41e-28 109
MsaG001765 MtrunA17_Chr3g0099131 59.211 76 31 0 12 87 41 116 7.11e-28 108
MsaG001765 MtrunA17_Chr8g0343831 54.023 87 36 1 1 87 1 83 1.45e-27 104
MsaG001765 MtrunA17_Chr7g0228231 57.895 76 32 0 12 87 14 89 1.77e-27 102
MsaG001765 MtrunA17_Chr2g0322521 62.025 79 30 0 9 87 26 104 2.59e-27 106
MsaG001765 MtrunA17_Chr6g0450101 49.495 99 47 2 1 97 1 98 3.02e-27 102
MsaG001765 MtrunA17_Chr1g0203441 61.333 75 29 0 13 87 14 88 5.06e-27 103
MsaG001765 MtrunA17_Chr8g0342481 53.409 88 40 1 1 87 1 88 7.00e-27 105
MsaG001765 MtrunA17_Chr5g0425591 53.165 79 37 0 13 91 10 88 9.30e-27 97.8
MsaG001765 MtrunA17_Chr1g0194291 55.844 77 34 0 11 87 20 96 1.01e-26 102
MsaG001765 MtrunA17_Chr6g0470971 54.762 84 38 0 4 87 6 89 1.29e-26 102
MsaG001765 MtrunA17_Chr4g0055981 54.430 79 36 0 9 87 52 130 1.37e-26 101
MsaG001765 MtrunA17_Chr1g0154031 55.263 76 34 0 12 87 76 151 1.86e-26 103
MsaG001765 MtrunA17_Chr2g0328771 59.211 76 31 0 12 87 20 95 4.48e-26 101
MsaG001765 MtrunA17_Chr7g0220341 56.962 79 32 1 11 87 24 102 6.85e-26 100
MsaG001765 MtrunA17_Chr5g0440781 50.588 85 42 0 13 97 13 97 7.72e-26 98.2
MsaG001765 MtrunA17_Chr4g0032401 59.211 76 31 0 12 87 17 92 2.09e-25 100
MsaG001765 MtrunA17_Chr5g0440761 50.588 85 42 0 13 97 13 97 2.96e-25 98.6
MsaG001765 MtrunA17_Chr8g0360111 53.247 77 36 0 11 87 24 100 3.21e-25 98.2
MsaG001765 MtrunA17_Chr3g0088461 58.228 79 33 0 9 87 19 97 3.50e-25 99.8
MsaG001765 MtrunA17_Chr5g0441141 50.588 85 42 0 13 97 13 97 4.12e-25 98.2
MsaG001765 MtrunA17_Chr5g0434911 49.383 81 41 0 7 87 16 96 4.66e-25 98.2
MsaG001765 MtrunA17_Chr6g0453751 46.078 102 45 2 10 103 18 117 8.46e-25 94.0
MsaG001765 MtrunA17_Chr5g0434831 53.846 78 36 0 10 87 5 82 9.25e-25 95.5
MsaG001765 MtrunA17_Chr1g0186061 50.667 75 37 0 13 87 21 95 2.25e-24 95.9
MsaG001765 MtrunA17_Chr5g0434931 50.000 78 39 0 10 87 33 110 2.39e-24 96.3
MsaG001765 MtrunA17_Chr7g0240821 56.944 72 31 0 16 87 5 76 3.55e-24 94.7
MsaG001765 MtrunA17_Chr1g0194301 50.000 76 38 0 12 87 33 108 5.10e-24 95.5
MsaG001765 MtrunA17_Chr1g0168661 47.561 82 43 0 6 87 15 96 5.31e-24 95.1
MsaG001765 MtrunA17_Chr1g0192411 52.000 75 36 0 12 86 12 86 1.16e-23 96.3
MsaG001765 MtrunA17_Chr5g0434841 50.000 80 40 0 8 87 16 95 1.87e-23 94.7
MsaG001765 MtrunA17_Chr7g0228991 50.000 78 39 0 10 87 27 104 2.60e-23 93.6
MsaG001765 MtrunA17_Chr1g0180391 51.316 76 37 0 12 87 19 94 3.39e-22 89.7
MsaG001765 MtrunA17_Chr4g0068921 52.632 76 36 0 12 87 24 99 4.14e-22 88.6
MsaG001765 MtrunA17_Chr2g0293911 52.632 76 36 0 12 87 24 99 5.93e-22 90.9
MsaG001765 MtrunA17_Chr5g0441131 44.706 85 47 0 13 97 10 94 8.78e-22 87.4
MsaG001765 MtrunA17_Chr4g0013361 46.914 81 42 1 8 87 6 86 1.37e-20 86.7
MsaG001765 MtrunA17_Chr8g0334881 43.210 81 45 1 8 87 6 86 4.37e-19 82.8
MsaG001765 MtrunA17_Chr2g0327821 44.737 76 42 0 12 87 6 81 3.79e-18 79.0
MsaG001765 MtrunA17_Chr6g0454921 51.351 74 35 1 14 87 15 87 5.42e-18 78.2
MsaG001765 MtrunA17_Chr1g0193901 55.000 60 26 1 10 68 9 68 9.40e-18 75.1
MsaG001765 MtrunA17_Chr1g0193891 55.000 60 26 1 10 68 9 68 9.40e-18 75.1
MsaG001765 MtrunA17_Chr1g0193871 55.000 60 26 1 10 68 9 68 9.40e-18 75.1
MsaG001765 MtrunA17_Chr1g0193881 55.000 60 26 1 10 68 9 68 9.40e-18 75.1
MsaG001765 MtrunA17_Chr3g0133601 48.649 74 37 1 14 87 37 109 1.19e-17 77.4
MsaG001765 MtrunA17_Chr4g0030881 42.683 82 40 1 13 87 8 89 2.66e-17 77.0
MsaG001765 MtrunA17_Chr5g0401731 48.649 74 37 1 14 87 15 87 4.05e-17 77.4
MsaG001765 MtrunA17_Chr7g0247131 70.455 44 13 0 44 87 10 53 5.64e-17 76.6
MsaG001765 MtrunA17_Chr7g0247141 66.667 48 15 1 1 47 1 48 6.30e-17 71.2
MsaG001765 MtrunA17_Chr4g0053431 47.436 78 32 2 14 87 5 77 7.70e-17 76.3
MsaG001765 MtrunA17_Chr3g0117511 43.678 87 46 2 3 87 170 255 2.48e-15 73.2
MsaG001765 MtrunA17_Chr4g0008551 46.667 75 37 2 14 87 38 110 2.70e-15 72.8
MsaG001765 MtrunA17_Chr1g0157731 40.789 76 44 1 12 87 89 163 5.72e-14 69.3
MsaG001765 MtrunA17_Chr3g0139671 42.105 76 43 1 12 87 83 157 9.19e-14 68.9
MsaG001765 MtrunA17_Chr4g0058991 40.230 87 48 3 3 87 197 281 1.88e-13 67.8
MsaG001765 MtrunA17_Chr5g0429661 42.857 77 41 2 12 87 120 194 6.96e-13 65.9
MsaG001765 MtrunA17_Chr6g0460661 29.054 148 94 3 14 151 16 162 1.33e-12 62.8
MsaG001765 MtrunA17_Chr6g0480581 44.595 74 40 1 14 87 4 76 4.48e-12 62.8
MsaG001765 MtrunA17_Chr7g0238631 42.105 76 43 1 12 87 111 185 5.93e-12 63.5
MsaG001765 MtrunA17_Chr7g0229101 59.091 44 18 0 44 87 4 47 1.44e-11 60.8
MsaG001765 MtrunA17_Chr4g0042501 44.000 75 39 2 14 87 105 177 3.29e-11 61.2
MsaG001765 MtrunA17_Chr7g0229131 56.818 44 19 0 44 87 4 47 3.44e-11 59.3
MsaG001765 MtrunA17_Chr7g0238651 38.356 73 43 1 17 87 10 82 6.24e-11 60.1
MsaG001765 MtrunA17_Chr5g0434901 57.500 40 17 0 48 87 9 48 8.25e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001765 AT2G31180.1 79.310 87 18 0 1 87 1 87 4.23e-49 160
MsaG001765 AT3G23250.1 78.161 87 19 0 1 87 1 87 9.57e-48 157
MsaG001765 AT1G06180.1 75.862 87 21 0 1 87 1 87 5.94e-45 149
MsaG001765 AT4G21440.1 74.713 87 22 0 1 87 1 87 2.09e-44 150
MsaG001765 AT1G16490.1 71.765 85 24 0 3 87 5 89 6.32e-43 144
MsaG001765 AT5G16770.4 68.041 97 30 1 1 97 1 96 9.92e-43 145
MsaG001765 AT5G16770.3 68.041 97 30 1 1 97 1 96 9.92e-43 145
MsaG001765 AT5G16770.1 68.041 97 30 1 1 97 1 96 1.72e-42 145
MsaG001765 AT5G16770.2 68.041 97 30 1 1 97 1 96 1.72e-42 145
MsaG001765 AT3G02940.2 71.264 87 25 0 1 87 1 87 1.87e-42 144
MsaG001765 AT3G02940.1 71.264 87 25 0 1 87 1 87 3.13e-42 144
MsaG001765 AT3G02940.3 71.264 87 25 0 1 87 1 87 3.13e-42 144
MsaG001765 AT4G05100.1 73.864 88 22 1 1 87 1 88 6.16e-42 143
MsaG001765 AT1G79180.1 67.742 93 28 1 3 93 5 97 1.95e-41 141
MsaG001765 AT4G28110.1 70.115 87 26 0 1 87 1 87 1.97e-41 141
MsaG001765 AT1G56160.1 68.235 85 27 0 3 87 5 89 4.98e-41 140
MsaG001765 AT3G61250.1 67.816 87 28 0 1 87 1 87 6.62e-41 140
MsaG001765 AT3G01140.2 67.816 87 28 0 1 87 1 87 1.56e-40 140
MsaG001765 AT1G34670.1 70.115 87 26 0 1 87 1 87 1.68e-40 140
MsaG001765 AT5G49330.1 70.115 87 26 0 1 87 1 87 3.09e-40 139
MsaG001765 AT5G15310.4 67.816 87 28 0 1 87 1 87 5.54e-40 136
MsaG001765 AT5G15310.1 67.816 87 28 0 1 87 1 87 6.15e-40 138
MsaG001765 AT5G15310.2 67.816 87 28 0 1 87 1 87 6.78e-40 138
MsaG001765 AT3G01140.1 66.667 87 29 0 1 87 44 130 1.16e-39 139
MsaG001765 AT2G16720.1 67.816 87 28 0 1 87 1 87 2.50e-39 135
MsaG001765 AT5G10280.1 67.816 87 28 0 1 87 1 87 2.52e-39 137
MsaG001765 AT4G38620.1 68.966 87 27 0 1 87 1 87 5.56e-39 135
MsaG001765 AT3G12820.1 67.059 85 28 0 3 87 5 89 6.90e-39 133
MsaG001765 AT5G65230.1 68.966 87 27 0 1 87 1 87 1.59e-38 134
MsaG001765 AT1G22640.1 65.517 87 30 0 1 87 1 87 2.13e-38 132
MsaG001765 AT4G09460.1 65.517 87 30 0 1 87 1 87 3.47e-38 131
MsaG001765 AT4G17785.2 65.909 88 29 1 1 87 1 88 3.82e-38 134
MsaG001765 AT2G47460.1 65.517 87 30 0 1 87 1 87 4.00e-38 134
MsaG001765 AT4G17785.1 65.909 88 29 1 1 87 1 88 4.00e-38 134
MsaG001765 AT5G60890.1 64.368 87 31 0 1 87 1 87 6.00e-38 132
MsaG001765 AT3G13540.1 63.095 84 31 0 4 87 15 98 9.22e-38 130
MsaG001765 AT5G62470.2 65.517 87 30 0 1 87 1 87 1.10e-37 133
MsaG001765 AT1G35515.1 63.218 87 32 0 1 87 1 87 1.83e-37 129
MsaG001765 AT3G28910.1 64.368 87 31 0 1 87 1 87 1.95e-37 132
MsaG001765 AT5G07690.1 66.667 87 29 0 1 87 1 87 2.16e-37 132
MsaG001765 AT3G62610.1 61.856 97 36 1 1 97 1 96 2.51e-37 132
MsaG001765 AT5G16600.1 65.517 87 30 0 1 87 1 87 5.08e-37 130
MsaG001765 AT1G74080.1 63.218 87 32 0 1 87 1 87 6.45e-37 130
MsaG001765 AT5G61420.2 65.517 87 30 0 1 87 1 87 9.19e-37 131
MsaG001765 AT4G22680.1 63.218 87 32 0 1 87 1 87 2.70e-36 127
MsaG001765 AT3G47600.1 63.218 87 32 0 1 87 1 87 2.97e-36 129
MsaG001765 AT5G62470.1 65.517 87 29 1 1 87 1 86 3.21e-36 129
MsaG001765 AT4G34990.1 65.517 87 30 0 1 87 1 87 4.80e-36 127
MsaG001765 AT1G08810.1 64.368 87 31 0 1 87 1 87 6.75e-36 127
MsaG001765 AT1G74650.1 64.368 87 31 0 1 87 1 87 9.17e-36 127
MsaG001765 AT5G14340.1 62.069 87 33 0 1 87 13 99 1.83e-35 125
MsaG001765 AT1G18570.1 63.636 88 31 1 1 87 1 88 2.07e-35 127
MsaG001765 AT5G56110.1 63.218 87 32 0 1 87 1 87 7.56e-35 125
MsaG001765 AT1G79180.2 50.000 126 28 2 3 93 5 130 1.04e-34 125
MsaG001765 AT1G57560.1 62.069 87 33 0 1 87 1 87 1.26e-34 124
MsaG001765 AT1G57560.2 62.069 87 33 0 1 87 1 87 1.50e-34 123
MsaG001765 AT5G07700.1 64.368 87 31 0 1 87 1 87 1.73e-34 124
MsaG001765 AT5G07700.2 64.368 87 31 0 1 87 1 87 1.73e-34 124
MsaG001765 AT1G66230.1 62.069 87 33 0 1 87 1 87 1.93e-34 123
MsaG001765 AT5G26660.1 62.069 87 33 0 1 87 1 87 2.32e-34 124
MsaG001765 AT4G12350.1 62.069 87 33 0 1 87 1 87 3.91e-34 122
MsaG001765 AT4G01680.3 58.947 95 37 1 1 93 1 95 3.98e-34 121
MsaG001765 AT4G01680.1 62.069 87 33 0 1 87 1 87 1.36e-33 122
MsaG001765 AT5G54230.1 71.053 76 22 0 12 87 12 87 1.87e-33 121
MsaG001765 AT1G18710.1 55.556 99 43 1 1 99 1 98 2.01e-33 120
MsaG001765 AT3G13890.2 59.770 87 35 0 1 87 1 87 3.49e-33 121
MsaG001765 AT1G09540.1 60.920 87 34 0 1 87 1 87 6.20e-33 121
MsaG001765 AT3G12720.1 60.976 82 32 0 6 87 16 97 1.83e-32 118
MsaG001765 AT4G37780.1 55.172 87 38 1 1 86 1 87 1.68e-31 116
MsaG001765 AT3G28470.1 54.639 97 43 1 1 97 1 96 1.92e-31 116
MsaG001765 AT1G74430.1 55.556 99 43 1 1 99 1 98 3.28e-31 114
MsaG001765 AT2G32460.1 61.250 80 31 0 8 87 14 93 3.30e-31 118
MsaG001765 AT2G32460.2 61.538 78 30 0 10 87 4 81 1.11e-30 116
MsaG001765 AT5G57620.1 58.621 87 35 1 1 86 1 87 1.44e-30 114
MsaG001765 AT4G01680.2 54.545 99 33 1 1 87 1 99 3.50e-30 113
MsaG001765 AT3G13890.1 54.167 96 35 1 1 87 1 96 3.78e-30 113
MsaG001765 AT1G63910.1 56.322 87 38 0 1 87 1 87 5.99e-30 113
MsaG001765 AT3G49690.1 58.621 87 35 1 1 86 1 87 7.97e-30 111
MsaG001765 AT5G62320.1 53.261 92 36 1 3 87 4 95 8.73e-30 110
MsaG001765 AT5G06100.1 58.442 77 32 0 11 87 31 107 1.62e-29 113
MsaG001765 AT3G11440.2 56.471 85 33 1 7 87 32 116 2.75e-29 112
MsaG001765 AT2G36890.1 56.322 87 37 1 1 86 1 87 3.23e-29 110
MsaG001765 AT5G06100.5 58.442 77 32 0 11 87 31 107 3.29e-29 113
MsaG001765 AT5G06100.2 58.442 77 32 0 11 87 31 107 3.29e-29 113
MsaG001765 AT5G06100.3 58.442 77 32 0 11 87 31 107 3.29e-29 113
MsaG001765 AT5G06100.4 58.442 77 32 0 11 87 31 107 3.29e-29 113
MsaG001765 AT3G11440.3 56.471 85 33 1 7 87 32 116 3.89e-29 113
MsaG001765 AT3G11440.4 56.471 85 33 1 7 87 32 116 3.89e-29 113
MsaG001765 AT3G11440.1 56.471 85 33 1 7 87 32 116 3.89e-29 113
MsaG001765 AT5G23000.1 55.172 87 38 1 1 86 1 87 4.78e-29 110
MsaG001765 AT2G36890.2 56.322 87 37 1 1 86 42 128 5.24e-29 110
MsaG001765 AT5G14750.1 58.667 75 31 0 13 87 17 91 6.97e-29 106
MsaG001765 AT5G65790.1 56.322 87 37 1 1 86 1 87 1.39e-28 109
MsaG001765 AT5G40330.1 57.333 75 32 0 13 87 13 87 1.83e-28 106
MsaG001765 AT5G40350.1 57.895 76 32 0 12 87 17 92 4.16e-28 105
MsaG001765 AT5G55020.1 57.895 76 32 0 12 87 26 101 5.75e-28 109
MsaG001765 AT5G35550.1 61.842 76 29 0 12 87 14 89 1.04e-27 105
MsaG001765 AT3G01530.1 34.911 169 104 3 8 171 21 188 2.33e-27 102
MsaG001765 AT2G26960.1 54.430 79 36 0 9 87 17 95 2.67e-27 107
MsaG001765 AT3G27810.1 56.579 76 33 0 12 87 20 95 3.51e-27 102
MsaG001765 AT1G25340.1 58.667 75 31 0 13 87 19 93 1.23e-26 102
MsaG001765 AT4G26930.1 53.947 76 35 0 12 87 19 94 3.23e-26 103
MsaG001765 AT3G27920.1 52.500 80 38 0 8 87 10 89 3.39e-26 100
MsaG001765 AT1G68320.1 56.579 76 33 0 12 87 19 94 9.25e-26 100
MsaG001765 AT5G12870.1 53.488 86 40 0 2 87 8 93 1.43e-25 100
MsaG001765 AT3G30210.1 53.247 77 36 0 11 87 26 102 3.29e-25 99.0
MsaG001765 AT3G08500.1 55.696 79 35 0 9 87 27 105 7.00e-25 99.4
MsaG001765 AT1G48000.1 53.947 76 35 0 12 87 32 107 7.80e-25 97.4
MsaG001765 AT2G47190.1 50.000 80 40 0 8 87 16 95 1.18e-24 97.4
MsaG001765 AT3G24310.1 51.948 77 37 0 11 87 17 93 1.96e-24 96.7
MsaG001765 AT4G25560.1 61.333 75 29 0 13 87 11 85 2.69e-24 96.7
MsaG001765 AT5G52600.1 54.430 79 36 0 9 87 9 87 2.72e-24 94.7
MsaG001765 AT4G13480.1 53.333 75 35 0 13 87 7 81 3.79e-24 95.9
MsaG001765 AT1G66370.1 52.564 78 37 0 10 87 6 83 4.03e-24 95.5
MsaG001765 AT1G66380.2 56.410 78 34 0 10 87 6 83 9.45e-24 90.9
MsaG001765 AT5G52260.1 55.172 87 39 0 1 87 1 87 1.13e-23 94.7
MsaG001765 AT1G66380.1 56.410 78 34 0 10 87 6 83 5.98e-23 89.7
MsaG001765 AT1G56650.1 56.410 78 34 0 10 87 6 83 1.56e-22 91.3
MsaG001765 AT3G48920.1 49.367 79 40 0 9 87 15 93 2.79e-22 90.9
MsaG001765 AT1G25340.2 54.667 75 29 1 13 87 19 88 2.94e-22 91.3
MsaG001765 AT1G66390.1 56.410 78 34 0 10 87 6 83 4.26e-22 90.1
MsaG001765 AT1G25340.3 54.667 75 29 1 13 87 19 88 4.55e-22 91.3
MsaG001765 AT5G49620.2 50.000 82 41 0 8 89 22 103 5.36e-21 88.6
MsaG001765 AT3G06490.1 53.947 76 35 0 12 87 19 94 9.43e-21 87.8
MsaG001765 AT5G49620.1 50.000 80 40 0 8 87 22 101 2.01e-20 86.7
MsaG001765 AT3G60460.1 43.902 82 45 1 7 87 6 87 7.51e-20 85.1
MsaG001765 AT3G46130.1 43.750 80 45 0 8 87 5 84 9.63e-20 84.0
MsaG001765 AT3G53200.1 51.316 76 37 0 12 87 9 84 2.65e-19 82.4
MsaG001765 AT5G59780.3 45.333 75 41 0 13 87 9 83 2.85e-19 82.4
MsaG001765 AT2G26950.1 44.304 79 44 0 9 87 13 91 5.39e-19 83.6
MsaG001765 AT4G37260.1 50.000 74 36 1 14 87 13 85 1.29e-17 79.3
MsaG001765 AT2G23290.1 48.649 74 37 1 14 87 13 85 1.04e-16 76.6
MsaG001765 AT5G26660.2 72.093 43 12 0 45 87 14 56 1.22e-16 76.6
MsaG001765 AT5G14750.3 63.265 49 15 1 39 87 12 57 3.03e-16 72.8
MsaG001765 AT3G12820.2 70.732 41 12 0 47 87 1 41 3.46e-16 73.2
MsaG001765 AT3G50060.1 48.649 74 37 1 14 87 6 78 6.05e-16 74.3
MsaG001765 AT3G55730.1 48.718 78 31 2 14 87 56 128 1.35e-15 74.3
MsaG001765 AT5G67300.1 48.649 74 37 1 14 87 6 78 2.04e-15 73.2
MsaG001765 AT5G35550.2 65.306 49 17 0 39 87 44 92 3.71e-15 71.6
MsaG001765 AT4G18770.1 42.683 82 42 2 8 87 211 289 1.30e-14 71.2
MsaG001765 AT3G27785.1 41.463 82 43 2 8 87 183 261 3.31e-14 70.1
MsaG001765 AT5G58850.1 43.590 78 43 1 10 87 101 177 4.73e-14 69.7
MsaG001765 AT3G09230.1 42.308 78 36 2 14 87 55 127 8.56e-14 68.9
MsaG001765 AT5G40350.2 60.465 43 17 0 45 87 5 47 1.07e-13 66.2
MsaG001765 AT2G39880.1 47.436 78 32 2 14 87 50 122 1.07e-13 68.6
MsaG001765 AT5G40360.1 37.931 87 53 1 1 87 145 230 1.17e-13 68.6
MsaG001765 AT5G11050.1 41.772 79 43 2 10 87 101 177 2.17e-13 67.8
MsaG001765 AT3G27810.2 55.556 45 20 0 43 87 2 46 3.32e-13 65.1
MsaG001765 AT4G32730.5 40.789 76 44 1 12 87 85 159 6.39e-13 66.6
MsaG001765 AT4G32730.4 40.789 76 44 1 12 87 85 159 6.39e-13 66.6
MsaG001765 AT4G32730.3 40.789 76 44 1 12 87 85 159 6.39e-13 66.6
MsaG001765 AT4G32730.2 40.789 76 44 1 12 87 85 159 6.39e-13 66.6
MsaG001765 AT4G32730.1 40.789 76 44 1 12 87 85 159 6.51e-13 66.6
MsaG001765 AT5G11510.3 43.750 80 36 2 12 87 79 153 8.14e-13 66.6
MsaG001765 AT5G11510.1 43.750 80 36 2 12 87 79 153 8.14e-13 66.6
MsaG001765 AT5G11510.4 43.750 80 36 2 12 87 79 153 8.14e-13 66.6
MsaG001765 AT3G09370.1 42.500 80 37 2 12 87 128 202 8.77e-13 66.2
MsaG001765 AT3G09370.2 42.500 80 37 2 12 87 133 207 8.97e-13 66.2
MsaG001765 AT5G11510.2 43.750 80 36 2 12 87 79 153 9.39e-13 66.2
MsaG001765 AT4G33450.1 38.824 85 46 2 3 87 13 91 9.88e-13 65.1
MsaG001765 AT3G09370.3 42.500 80 37 2 12 87 141 215 1.01e-12 65.9
MsaG001765 AT5G11510.5 43.750 80 36 2 12 87 79 153 1.02e-12 66.2
MsaG001765 AT3G47600.2 62.791 43 16 0 45 87 39 81 1.35e-12 65.1
MsaG001765 AT3G29020.2 40.541 74 43 1 14 87 67 139 4.47e-12 63.5
MsaG001765 AT3G29020.1 40.541 74 43 1 14 87 65 137 4.63e-12 62.8
MsaG001765 AT1G17950.1 45.333 75 38 2 14 87 5 77 1.15e-11 62.0
MsaG001765 AT5G02320.1 39.474 76 45 1 12 87 125 199 1.15e-11 63.2
MsaG001765 AT5G02320.2 39.474 76 45 1 12 87 125 199 1.15e-11 63.2
MsaG001765 AT5G02320.3 39.474 76 45 1 12 87 65 139 1.29e-11 62.8
MsaG001765 AT1G69560.2 41.250 80 44 2 9 87 118 195 1.96e-11 62.0
MsaG001765 AT1G69560.1 41.250 80 44 2 9 87 102 179 2.09e-11 62.0
MsaG001765 AT2G37630.1 39.726 73 42 1 17 87 7 79 5.48e-11 60.8
MsaG001765 AT3G53200.2 60.465 43 17 0 45 87 9 51 6.48e-11 59.3
MsaG001765 AT3G46130.3 52.273 44 21 0 44 87 9 52 9.45e-11 59.3

Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATTATCAAAAGGGTTT+TGG 0.220517 1:+26121397 None:intergenic
TGAAAAGAAGGGATTGAAAA+AGG 0.278369 1:-26123056 MsaT001765.1:CDS
TTAAAATTGTATTGTTGATC+TGG 0.320458 1:+26121438 None:intergenic
AAATTTCCTCTCTTAATATC+AGG 0.325119 1:+26122745 None:intergenic
GAACAAATACCTGCATGTTT+TGG 0.334771 1:+26122956 None:intergenic
TTGAAATTGATGAAAGCTTT+TGG 0.341700 1:-26121533 MsaT001765.1:CDS
GAAACTGTCATAGAATTTGA+TGG 0.351777 1:+26121471 None:intergenic
GAGGATTTCATCTTCCTCTA+AGG 0.392145 1:+26123024 None:intergenic
ATTGTCACAAATGAATCTTC+AGG 0.397071 1:+26121558 None:intergenic
TATGACGTGTTTATCAAATC+AGG 0.415459 1:-26121357 MsaT001765.1:CDS
TGCATGAGTCACTGGGGAAC+AGG 0.418688 1:-26122690 MsaT001765.1:intron
AAAGGGTCCTTGGACCTTAG+AGG 0.420566 1:-26123038 MsaT001765.1:CDS
CATCAAGATGCATGAGTCAC+TGG 0.430430 1:-26122698 MsaT001765.1:CDS
ATGCCATCATCATTATCAAA+AGG 0.440486 1:+26121390 None:intergenic
GGCTCCTTGTTGTGAAAAGA+AGG 0.442620 1:-26123068 MsaT001765.1:CDS
ATAAACATGGACATAGCAAT+TGG 0.459805 1:-26122988 MsaT001765.1:CDS
TGCCATCATCATTATCAAAA+GGG 0.487704 1:+26121391 None:intergenic
ATGATGTAAGTCTAAAACTC+AGG 0.524939 1:+26121318 None:intergenic
TTTGCAGGTTTATTAAGATG+TGG 0.531442 1:-26122805 MsaT001765.1:intron
ATCAAGATGCATGAGTCACT+GGG 0.537633 1:-26122697 MsaT001765.1:CDS
TTGTCACAAATGAATCTTCA+GGG 0.549007 1:+26121559 None:intergenic
TCATCTTCCTCTAAGGTCCA+AGG 0.559081 1:+26123031 None:intergenic
GAAAGAGTTGTCGATTGAGA+TGG 0.564322 1:-26122783 MsaT001765.1:CDS
TTAAAACCTGATATTAAGAG+AGG 0.565110 1:-26122751 MsaT001765.1:CDS
GCTCCTTGTTGTGAAAAGAA+GGG 0.589438 1:-26123067 MsaT001765.1:CDS
TGTCATAGAATTTGATGGCA+TGG 0.606056 1:+26121476 None:intergenic
CGTGCCCTACCAAAACATGC+AGG 0.611878 1:-26122965 MsaT001765.1:intron
ACATCATACATCAATAAACA+TGG 0.617616 1:-26123001 MsaT001765.1:CDS
GTTTATTGATGTATGATGTG+AGG 0.651160 1:+26123005 None:intergenic
CATAGAATTTGATGGCATGG+TGG 0.691929 1:+26121479 None:intergenic
TCAAGATGCATGAGTCACTG+GGG 0.758088 1:-26122696 MsaT001765.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 26121329 26123098 26121329 ID=MsaG001765
Chr1 mRNA 26121329 26123098 26121329 ID=MsaT001765.1;Parent=MsaG001765
Chr1 exon 26121329 26121629 26121329 ID=MsaT001765.1.exon3;Parent=MsaT001765.1
Chr1 CDS 26121329 26121629 26121329 ID=cds.MsaT001765.1;Parent=MsaT001765.1
Chr1 exon 26122691 26122820 26122691 ID=MsaT001765.1.exon2;Parent=MsaT001765.1
Chr1 CDS 26122691 26122820 26122691 ID=cds.MsaT001765.1;Parent=MsaT001765.1
Chr1 exon 26122966 26123098 26122966 ID=MsaT001765.1.exon1;Parent=MsaT001765.1
Chr1 CDS 26122966 26123098 26122966 ID=cds.MsaT001765.1;Parent=MsaT001765.1
Gene Sequence

>MsaT001765.1

ATGGTTAGGGCTCCTTGTTGTGAAAAGAAGGGATTGAAAAAGGGTCCTTGGACCTTAGAGGAAGATGAAATCCTCACATCATACATCAATAAACATGGACATAGCAATTGGCGTGCCCTACCAAAACATGCAGGTTTATTAAGATGTGGAAAGAGTTGTCGATTGAGATGGATTAACTATTTAAAACCTGATATTAAGAGAGGAAATTTTTCAAATGAAGAAGAGGAAACTATCATCAAGATGCATGAGTCACTGGGGAACAGTGATTTTTCATCACAAGGAAAAAATTTGGACAATAGCATCATTTGTGACCCTGAAGATTCATTTGTGACAATGCTTGAAATTGATGAAAGCTTTTGGTCAGAGACAGTAATTGATGATGAAATTAGTTCCACCATGCCATCAAATTCTATGACAGTTTCAAATGATTTACCAGATCAACAATACAATTTTAATAATTCAGTGGAAAATTTCCAAAACCCTTTTGATAATGATGATGGCATGGATTTTTGGTATGACGTGTTTATCAAATCAGGAGAATCAACAGAATTGCCTGAGTTTTAG

Protein sequence

>MsaT001765.1

MVRAPCCEKKGLKKGPWTLEEDEILTSYINKHGHSNWRALPKHAGLLRCGKSCRLRWINYLKPDIKRGNFSNEEEETIIKMHESLGNSDFSSQGKNLDNSIICDPEDSFVTMLEIDESFWSETVIDDEISSTMPSNSMTVSNDLPDQQYNFNNSVENFQNPFDNDDGMDFWYDVFIKSGESTELPEF*