AlfalfaGEDB | MsaG001765

M. sativa ssp. caerulea / MsaG001765

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001765	XP_039690520.1	50.206	243	60	4	1	187	1	238	1.77e-63	206

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001765	sp\|Q9SJX8\|MYB14_ARATH	79.310	87	18	0	1	87	1	87	4.17e-48	160

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001765	tr\|A0A445LHT3\|A0A445LHT3_GLYSO	48.106	264	59	8	1	187	1	263	1.97e-61	201

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TFs/TRs:

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Gene ID	Type	Classification
MsaG001765	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000015	MsaG001765	0.842592	4.380758e-58	1.856669e-55
MsaG000071	MsaG001765	0.805937	1.775702e-49	2.751568e-47
MsaG000083	MsaG001765	0.818848	2.762279e-52	5.893854e-50
MsaG000113	MsaG001765	0.844275	1.563872e-58	6.997318e-56
MsaG000135	MsaG001765	0.816884	7.634090e-52	1.548243e-49
MsaG000151	MsaG001765	0.908485	3.894412e-81	3.337756e-77
MsaG000153	MsaG001765	0.845959	5.511666e-59	2.606778e-56
MsaG000163	MsaG001765	0.899495	4.295276e-77	2.132937e-73
MsaG000188	MsaG001765	0.861010	2.728987e-63	2.204885e-60
MsaG000213	MsaG001765	0.898255	1.447542e-76	6.691388e-73

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001765	MtrunA17_Chr1g0167691	98.851	87	1	0	1	87	1	87	2.19e-61	191
MsaG001765	MtrunA17_Chr1g0167691	77.953	127	22	3	62	187	134	255	8.77e-56	177
MsaG001765	MtrunA17_Chr1g0167661	93.103	87	6	0	1	87	1	87	2.34e-56	178
MsaG001765	MtrunA17_Chr1g0167661	73.267	101	20	2	88	187	160	254	3.50e-44	147
MsaG001765	MtrunA17_Chr1g0187761	87.356	87	11	0	1	87	1	87	2.68e-54	173
MsaG001765	MtrunA17_Chr1g0187761	51.282	78	37	1	111	187	181	258	2.75e-17	77.0
MsaG001765	MtrunA17_Chr7g0261281	78.161	87	19	0	1	87	1	87	5.46e-48	157
MsaG001765	MtrunA17_Chr7g0274581	42.233	206	92	5	1	180	1	205	1.72e-47	154
MsaG001765	MtrunA17_Chr1g0203411	73.563	87	23	0	1	87	1	87	7.28e-45	150
MsaG001765	MtrunA17_Chr4g0039971	72.414	87	24	0	1	87	2	88	6.48e-43	146

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001765	AT2G31180.1	79.310	87	18	0	1	87	1	87	4.23e-49	160
MsaG001765	AT3G23250.1	78.161	87	19	0	1	87	1	87	9.57e-48	157
MsaG001765	AT1G06180.1	75.862	87	21	0	1	87	1	87	5.94e-45	149
MsaG001765	AT4G21440.1	74.713	87	22	0	1	87	1	87	2.09e-44	150
MsaG001765	AT1G16490.1	71.765	85	24	0	3	87	5	89	6.32e-43	144
MsaG001765	AT5G16770.4	68.041	97	30	1	1	97	1	96	9.92e-43	145
MsaG001765	AT5G16770.3	68.041	97	30	1	1	97	1	96	9.92e-43	145
MsaG001765	AT5G16770.1	68.041	97	30	1	1	97	1	96	1.72e-42	145
MsaG001765	AT5G16770.2	68.041	97	30	1	1	97	1	96	1.72e-42	145
MsaG001765	AT3G02940.2	71.264	87	25	0	1	87	1	87	1.87e-42	144

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Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGTCCTTGGACCTTAG+AGG	0.420566	1:-26123038	MsaT001765.1:CDS
AAATTTCCTCTCTTAATATC+AGG	0.325119	1:+26122745	None:intergenic
ACATCATACATCAATAAACA+TGG	0.617616	1:-26123001	MsaT001765.1:CDS
ATAAACATGGACATAGCAAT+TGG	0.459805	1:-26122988	MsaT001765.1:CDS
ATCAAGATGCATGAGTCACT+GGG	0.537633	1:-26122697	MsaT001765.1:CDS
ATGATGTAAGTCTAAAACTC+AGG	0.524939	1:+26121318	None:intergenic
ATGCCATCATCATTATCAAA+AGG	0.440486	1:+26121390	None:intergenic
ATTGTCACAAATGAATCTTC+AGG	0.397071	1:+26121558	None:intergenic
CATAGAATTTGATGGCATGG+TGG	0.691929	1:+26121479	None:intergenic
CATCAAGATGCATGAGTCAC+TGG	0.430430	1:-26122698	MsaT001765.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	26121329	26123098	26121329	ID=MsaG001765
Chr1	mRNA	26121329	26123098	26121329	ID=MsaT001765.1;Parent=MsaG001765
Chr1	exon	26121329	26121629	26121329	ID=MsaT001765.1.exon3;Parent=MsaT001765.1
Chr1	CDS	26121329	26121629	26121329	ID=cds.MsaT001765.1;Parent=MsaT001765.1
Chr1	exon	26122691	26122820	26122691	ID=MsaT001765.1.exon2;Parent=MsaT001765.1
Chr1	CDS	26122691	26122820	26122691	ID=cds.MsaT001765.1;Parent=MsaT001765.1
Chr1	exon	26122966	26123098	26122966	ID=MsaT001765.1.exon1;Parent=MsaT001765.1
Chr1	CDS	26122966	26123098	26122966	ID=cds.MsaT001765.1;Parent=MsaT001765.1

Gene Sequence

>MsaT001765.1

ATGGTTAGGGCTCCTTGTTGTGAAAAGAAGGGATTGAAAAAGGGTCCTTGGACCTTAGAGGAAGATGAAATCCTCACATCATACATCAATAAACATGGACATAGCAATTGGCGTGCCCTACCAAAACATGCAGGTTTATTAAGATGTGGAAAGAGTTGTCGATTGAGATGGATTAACTATTTAAAACCTGATATTAAGAGAGGAAATTTTTCAAATGAAGAAGAGGAAACTATCATCAAGATGCATGAGTCACTGGGGAACAGTGATTTTTCATCACAAGGAAAAAATTTGGACAATAGCATCATTTGTGACCCTGAAGATTCATTTGTGACAATGCTTGAAATTGATGAAAGCTTTTGGTCAGAGACAGTAATTGATGATGAAATTAGTTCCACCATGCCATCAAATTCTATGACAGTTTCAAATGATTTACCAGATCAACAATACAATTTTAATAATTCAGTGGAAAATTTCCAAAACCCTTTTGATAATGATGATGGCATGGATTTTTGGTATGACGTGTTTATCAAATCAGGAGAATCAACAGAATTGCCTGAGTTTTAG

Protein sequence

>MsaT001765.1

MVRAPCCEKKGLKKGPWTLEEDEILTSYINKHGHSNWRALPKHAGLLRCGKSCRLRWINYLKPDIKRGNFSNEEEETIIKMHESLGNSDFSSQGKNLDNSIICDPEDSFVTMLEIDESFWSETVIDDEISSTMPSNSMTVSNDLPDQQYNFNNSVENFQNPFDNDDGMDFWYDVFIKSGESTELPEF*