AlfalfaGEDB | MsaG001831

M. sativa ssp. caerulea / MsaG001831

KEGG: -
GO: -
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001831	AES60398.2	85.821	134	19	0	1	134	1	134	6.72e-72	221

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001831	tr\|G7I6L4\|G7I6L4_MEDTR	85.821	134	19	0	1	134	1	134	3.21e-72	221

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TFs/TRs:

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Gene ID	Type	Classification
MsaG001831	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001831	MtrunA17_Chr5g0399781	51.852	54	25	1	3	56	12	64	1.33e-11	60.1
MsaG001831	MtrunA17_Chr4g0055611	66.667	36	12	0	3	38	12	47	6.04e-11	58.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 20 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAAGCTTCAAAGTCTA+TGG	0.184389	1:+27387646	MsaT001831.1:CDS
ACAAAAGCTTCAAAGTCTAT+GGG	0.556384	1:+27387647	MsaT001831.1:CDS
ATCAGACCTTGACGTTGAAA+AGG	0.465983	1:+27387289	MsaT001831.1:CDS
ATCGATTGTGAAGAATCAAA+TGG	0.491491	1:+27387614	MsaT001831.1:CDS
ATTTGATTCTTCACAATCGA+TGG	0.523804	1:-27387612	None:intergenic
CATAGTATTGGCTTCTCATA+CGG	0.492997	1:-27387188	None:intergenic
CCAAGCAATGAGATAGGCAT+TGG	0.496933	1:+27387741	MsaT001831.1:CDS
CCAATACTATGTAATGCTTG+TGG	0.579274	1:+27387200	MsaT001831.1:CDS
CCAATGCCTATCTCATTGCT+TGG	0.566560	1:-27387741	None:intergenic
CCACAAGCATTACATAGTAT+TGG	0.433061	1:-27387200	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	27387152	27387809	27387152	ID=MsaG001831
Chr1	mRNA	27387152	27387809	27387152	ID=MsaT001831.1;Parent=MsaG001831
Chr1	exon	27387152	27387350	27387152	ID=MsaT001831.1.exon1;Parent=MsaT001831.1
Chr1	CDS	27387152	27387350	27387152	ID=cds.MsaT001831.1;Parent=MsaT001831.1
Chr1	exon	27387604	27387809	27387604	ID=MsaT001831.1.exon2;Parent=MsaT001831.1
Chr1	CDS	27387604	27387809	27387604	ID=cds.MsaT001831.1;Parent=MsaT001831.1

Gene Sequence

>MsaT001831.1

ATGGTTTTGACAGAAACTAAACTTTGGCGTAAAGGACCGTATGAGAAGCCAATACTATGTAATGCTTGTGGACTACATTTCAAGGCTAAAGGAACCCTTGATAACTATCTTCCGAAGACATCCCAACAAAATCAGTTATCAGACCTTGACGTTGAAAAGGAATCTGAAAGTCATCCCGAGCTTTCAAACCAATTTCCAGAAAGGACACCATCGATTGTGAAGAATCAAATGGAGGAGTTTCAACAAAAGCTTCAAAGTCTATGGGAATCTGAGAAAGAATTGAATGAATCATCTGAAGACAATATTTTGTTGTTTGATAATATGAACAACTGTATACCAAGCAATGAGATAGGCATTGGATGCACTCTACTGAAGACAGATGTTACTTCTAAAAAATCTGCATGA

Protein sequence

>MsaT001831.1

MVLTETKLWRKGPYEKPILCNACGLHFKAKGTLDNYLPKTSQQNQLSDLDVEKESESHPELSNQFPERTPSIVKNQMEEFQQKLQSLWESEKELNESSEDNILLFDNMNNCIPSNEIGIGCTLLKTDVTSKKSA*