AlfalfaGEDB | MsaG001863

M. sativa ssp. caerulea / MsaG001863

KEGG: K09422
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001863	XP_003590181.2	97.674	258	6	0	1	258	1	258	0.0	533

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001863	sp\|Q10MB4\|MYB2_ORYSJ	72.807	114	27	1	17	126	12	125	1.38e-53	179

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001863	tr\|G7I6P8\|G7I6P8_MEDTR	97.674	258	6	0	1	258	1	258	0.0	533

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TFs/TRs:

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Gene ID	Type	Classification
MsaG001863	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001863	MtrunA17_Chr1g0168661	97.674	258	6	0	1	258	1	258	0.0	533
MsaG001863	MtrunA17_Chr1g0186061	66.390	241	73	4	5	238	4	243	8.09e-103	299
MsaG001863	MtrunA17_Chr1g0209661	69.091	110	34	0	17	126	23	132	1.76e-53	175
MsaG001863	MtrunA17_Chr7g0228231	70.476	105	31	0	22	126	15	119	1.59e-52	169
MsaG001863	MtrunA17_Chr1g0194301	69.159	107	33	0	20	126	32	138	3.74e-52	171
MsaG001863	MtrunA17_Chr1g0194291	70.476	105	31	0	22	126	22	126	6.09e-52	170
MsaG001863	MtrunA17_Chr6g0450101	69.524	105	32	0	22	126	15	119	6.62e-52	168
MsaG001863	MtrunA17_Chr2g0327821	64.602	113	39	1	15	127	1	112	5.32e-50	164
MsaG001863	MtrunA17_Chr4g0030881	62.393	117	37	1	15	124	1	117	4.50e-49	162
MsaG001863	MtrunA17_Chr4g0039971	60.909	110	43	0	15	124	7	116	1.00e-46	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001863	AT4G13480.1	54.887	266	92	5	16	258	1	261	5.74e-88	262
MsaG001863	AT3G24310.1	59.542	262	78	8	18	258	15	269	9.07e-88	262
MsaG001863	AT3G30210.1	47.059	255	94	8	22	258	28	259	6.55e-64	201
MsaG001863	AT3G46130.1	68.750	112	35	0	15	126	3	114	1.98e-53	174
MsaG001863	AT5G59780.3	69.725	109	33	0	18	126	5	113	4.64e-53	172
MsaG001863	AT3G27810.1	69.091	110	33	1	17	126	17	125	3.49e-52	169
MsaG001863	AT1G48000.1	71.429	105	30	0	22	126	33	137	1.15e-51	169
MsaG001863	AT5G40350.1	70.588	102	30	0	22	123	18	119	2.01e-51	167
MsaG001863	AT1G68320.1	66.972	109	36	0	18	126	16	124	4.37e-51	169
MsaG001863	AT1G25340.1	67.619	105	34	0	22	126	19	123	3.32e-50	166

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Find 60 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTTGCAGATTGAGGT+GGG	0.627035	1:-27834512	MsaT001863.1:CDS
AACTCAGTTGCTAGGCTTAC+AGG	0.272684	1:-27834977	MsaT001863.1:intron
AATATTATGCTTTCTTCTTG+TGG	0.423745	1:+27834448	None:intergenic
AATTGGTCATGGTATCATGG+AGG	0.749718	1:-27835086	MsaT001863.1:CDS
ACAACAACTGCAATTCAACT+TGG	0.507410	1:-27833929	MsaT001863.1:CDS
ACAATGAAATAAAGAATTAC+TGG	0.345073	1:-27834080	MsaT001863.1:CDS
ACAATTGCAAGAAGTTTACC+GGG	0.627274	1:-27834111	MsaT001863.1:CDS
ACATTTGATTCTACATGTAT+TGG	0.353073	1:-27835129	None:intergenic
AGGACCATGGACTGCTGAAG+AGG	0.572659	1:-27835047	MsaT001863.1:CDS
AGGTGTCATGTCCATGTTTG+AGG	0.551244	1:-27833899	MsaT001863.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	27833654	27835137	27833654	ID=MsaG001863
Chr1	mRNA	27833654	27835137	27833654	ID=MsaT001863.1;Parent=MsaG001863
Chr1	exon	27833654	27834140	27833654	ID=MsaT001863.1.exon3;Parent=MsaT001863.1
Chr1	CDS	27833654	27834140	27833654	ID=cds.MsaT001863.1;Parent=MsaT001863.1
Chr1	exon	27834421	27834550	27834421	ID=MsaT001863.1.exon2;Parent=MsaT001863.1
Chr1	CDS	27834421	27834550	27834421	ID=cds.MsaT001863.1;Parent=MsaT001863.1
Chr1	exon	27834978	27835137	27834978	ID=MsaT001863.1.exon1;Parent=MsaT001863.1
Chr1	CDS	27834978	27835137	27834978	ID=cds.MsaT001863.1;Parent=MsaT001863.1

Gene Sequence

>MsaT001863.1

ATGTATTGGCGTGGAGTGATGGCAGGCCAAATTGGTCATGGTATCATGGAGGAAGAGGTTTGGAGGAAAGGACCATGGACTGCTGAAGAGGATAGGTTGTTGATTGACTATGTTAGGCTGCATGGTGAAGGCAGATGGAACTCAGTTGCTAGGCTTACAGGATTGAAAAGGAATGGAAAGAGTTGCAGATTGAGGTGGGTGAATTATCTAAGACCTGATCTCAAAAGAGGTCAAATAACACCACAAGAAGAAAGCATAATATTAGAGCTTCATGCTAGGTGGGGAAACAGATGGTCCACAATTGCAAGAAGTTTACCGGGAAGAACAGACAATGAAATAAAGAATTACTGGAGGACTCATTTCAAGAAAAAAGCAAAAAATCCCTATGATGCTGCCGAAAAGGCGAAAAACCGATTTCTGAGAAAGCAGTTATTTCACCAGCAGCAACAACAACAACAATTGCAGCAGCAGCAGCAACAACAACAACTGCAATTCAACTTGGACATGAAAGGTGTCATGTCCATGTTTGAGGAAAACAATAGCCATAGAATTCCTTATATATCTCAAACCAGACAAGAAATTTTCAACATGTATCCAAATACAACAGATGATCAGGGTTACTTTATGCTCAATGGAAACTCTTCTGTACCTAATGCAACAGAAGATGATAGTTTGTTTGATGGTCTGTGGAATTTGGATGATGTTCAAGGAAATTTCAGTGTTGCTAATGCAACAAACAAAGCTGGTCTATACAATTTAGTTGCTCCTTACTGTTAG

Protein sequence

>MsaT001863.1

MYWRGVMAGQIGHGIMEEEVWRKGPWTAEEDRLLIDYVRLHGEGRWNSVARLTGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKNPYDAAEKAKNRFLRKQLFHQQQQQQQLQQQQQQQQLQFNLDMKGVMSMFEENNSHRIPYISQTRQEIFNMYPNTTDDQGYFMLNGNSSVPNATEDDSLFDGLWNLDDVQGNFSVANATNKAGLYNLVAPYC*