AlfalfaGEDB | MsaG001900

M. sativa ssp. caerulea / MsaG001900

KEGG: K21554
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001900	KEH41184.1	61.864	354	111	4	2	354	5	335	1.12e-133	394

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001900	sp\|Q9M8K2\|REM21_ARATH	23.563	348	219	7	6	352	23	324	3.79e-17	84.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001900	tr\|A0A072VGK8\|A0A072VGK8_MEDTR	61.864	354	111	4	2	354	5	335	5.33e-134	394

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TFs/TRs:

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Gene ID	Type	Classification
MsaG001900	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000003	MsaG001900	0.837923	7.168608e-57	2.622940e-54
MsaG000015	MsaG001900	0.835545	2.875664e-56	9.791062e-54
MsaG000030	MsaG001900	0.849856	4.702222e-60	2.535869e-57
MsaG000045	MsaG001900	0.898436	1.213095e-76	5.665942e-73
MsaG000062	MsaG001900	0.830313	5.667149e-55	1.654826e-52
MsaG000070	MsaG001900	0.842868	3.703210e-58	1.583415e-55
MsaG000083	MsaG001900	0.914012	7.793767e-84	9.621229e-80
MsaG000110	MsaG001900	0.845092	9.445616e-59	4.341401e-56
MsaG000113	MsaG001900	0.911185	1.968296e-82	2.009841e-78
MsaG000127	MsaG001900	0.853385	4.757840e-61	2.901786e-58

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001900	MtrunA17_Chr1g0169171	61.538	325	101	4	31	354	1	302	8.39e-121	350
MsaG001900	MtrunA17_Chr1g0169081	92.899	169	11	1	187	354	156	324	1.30e-112	330
MsaG001900	MtrunA17_Chr1g0169161	73.529	170	43	1	184	353	166	333	1.44e-86	265
MsaG001900	MtrunA17_Chr3g0125151	70.866	127	35	1	228	354	1	125	1.90e-63	197
MsaG001900	MtrunA17_Chr3g0125161	72.881	118	32	0	2	119	16	133	1.08e-54	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001900	AT3G06160.5	23.055	347	222	6	6	352	8	309	3.69e-18	84.3
MsaG001900	AT3G06160.4	23.055	347	222	6	6	352	8	309	3.69e-18	84.3
MsaG001900	AT3G06160.3	23.055	347	222	6	6	352	8	309	3.69e-18	84.3
MsaG001900	AT3G06160.1	23.563	348	219	7	6	352	23	324	3.86e-18	84.7
MsaG001900	AT3G06160.2	24.138	348	217	8	6	352	67	368	7.68e-18	84.3
MsaG001900	AT4G01580.1	37.374	99	58	3	8	105	30	125	4.75e-12	64.7
MsaG001900	AT3G18960.2	37.624	101	59	3	8	107	30	127	1.14e-11	63.5
MsaG001900	AT3G18960.1	37.624	101	59	3	8	107	30	127	1.25e-11	63.9

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Find 61 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAAGGTAAATGACG+AGG	0.671120	1:-28395065	MsaT001900.1:CDS
AAAGAATTGTACCAATTCAT+TGG	0.326483	1:+28394534	None:intergenic
AAATCCTTGATAACATTCTT+TGG	0.259575	1:+28394190	None:intergenic
AAGAATTGTACCAATTCATT+GGG	0.434349	1:+28394535	None:intergenic
AAGGGTGCACATTGTTAGGA+AGG	0.552584	1:-28393791	MsaT001900.1:CDS
AATTGTAACTAAGATGGCCA+AGG	0.605912	1:-28395601	None:intergenic
ACAACACATATCGAAAAGAG+AGG	0.662380	1:-28393949	MsaT001900.1:CDS
AGAACCTGCAAGTGCAAAGC+TGG	0.504053	1:-28394779	MsaT001900.1:intron
AGAGAAGCACGCTGAAAGAA+TGG	0.532134	1:-28395547	MsaT001900.1:intron
AGAGAGGCCAAGTACGTATA+TGG	0.345367	1:-28393933	MsaT001900.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	28393786	28395610	28393786	ID=MsaG001900
Chr1	mRNA	28393786	28395610	28393786	ID=MsaT001900.1;Parent=MsaG001900
Chr1	exon	28393786	28394025	28393786	ID=MsaT001900.1.exon5;Parent=MsaT001900.1
Chr1	CDS	28393786	28394025	28393786	ID=cds.MsaT001900.1;Parent=MsaT001900.1
Chr1	exon	28394141	28394218	28394141	ID=MsaT001900.1.exon4;Parent=MsaT001900.1
Chr1	CDS	28394141	28394218	28394141	ID=cds.MsaT001900.1;Parent=MsaT001900.1
Chr1	exon	28394546	28394670	28394546	ID=MsaT001900.1.exon3;Parent=MsaT001900.1
Chr1	CDS	28394546	28394670	28394546	ID=cds.MsaT001900.1;Parent=MsaT001900.1
Chr1	exon	28394780	28395338	28394780	ID=MsaT001900.1.exon2;Parent=MsaT001900.1
Chr1	CDS	28394780	28395338	28394780	ID=cds.MsaT001900.1;Parent=MsaT001900.1
Chr1	exon	28395548	28395610	28395548	ID=MsaT001900.1.exon1;Parent=MsaT001900.1
Chr1	CDS	28395548	28395610	28395548	ID=cds.MsaT001900.1;Parent=MsaT001900.1

Gene Sequence

>MsaT001900.1

ATGGCCAAGGATTACCCAGACTTCTTCAAAGTTTTTTCCTCAGAGAAGCACGCTGAAAGAATGCGTATCCCTAATGCTTTTGTGAACTTGATGCGTTCAAAAAGGAGGGTAATAAATGATTTTATCCTAAGAGATCGTAGACGAAGAGATTGGCATGTCAAAGCTCGTCGTATTGGCGATGAGCTTTATTTTGACGATGGCTGGAAGCAATTTAGAGATGAAAATTCTTTAGAGGAGGACGATTTCCTTGTTTTTACACATATTGAAAACAACGTATTCAGGTTCAAAATTCTTCAACTATCATCAATGTGTGAAAAGAAGAAGGTAAATGACGAGGAGGAAAATAATAATATGATGGAGGATGAGGAAGAGGACAATGATGGTGATGATGATGACGACGATGATGAGGATGATGATTATGATTATGATGGTGATGATGCTGCTGCTGCTGCTGTTGATGATATTATGGCAGAGGAAGAAGATCATGATGATGATATTACGGCAGAGGAAGAACATCATGATACCGATGATGATGGTGATGACAACGACGAGAATGAAAGAATGTATAAGGAAATTAGTAGAAGTAAACATCAACATTGTAGAACCTGCAAGTGCAAAGCTGCGGACATTGGGAGCAGCTCTGCACGTTCAAAACTCGAAGATGACGAAATTGATGCTGAAATGTATATTCAACCGGGAAATCCACACTTTATTGCAAAATATATTCATTCCAGACCCAATGAATTGTTTATTCCAAAGAATGTTATCAAGGATTTCTGCCTCTACTTCACAAAACATGTCACCCTTGTGTGTTGCCACTGTAAGGACATTCAGAGTAATGACTTAGCGGCCTATCATCACATCTTGCCACAAATAAGTACAACACATATCGAAAAGAGAGGCCAAGTACGTATATGGAGAGATGGTCGAGTACGTGTGCTAGGGTGGGAAGATTTTTGTGGAAAGAGCAAGATCACAGAAAATGATAGTTGCTTATGCGAGATTGTGCTACGTGAAGATGGAACAATCGAAATGTTAAGGGTGCACATTGTTAGGAAGGAATGA

Protein sequence

>MsaT001900.1

MAKDYPDFFKVFSSEKHAERMRIPNAFVNLMRSKRRVINDFILRDRRRRDWHVKARRIGDELYFDDGWKQFRDENSLEEDDFLVFTHIENNVFRFKILQLSSMCEKKKVNDEEENNNMMEDEEEDNDGDDDDDDDEDDDYDYDGDDAAAAAVDDIMAEEEDHDDDITAEEEHHDTDDDGDDNDENERMYKEISRSKHQHCRTCKCKAADIGSSSARSKLEDDEIDAEMYIQPGNPHFIAKYIHSRPNELFIPKNVIKDFCLYFTKHVTLVCCHCKDIQSNDLAAYHHILPQISTTHIEKRGQVRIWRDGRVRVLGWEDFCGKSKITENDSCLCEIVLREDGTIEMLRVHIVRKE*