AlfalfaGEDB | MsaG001943

M. sativa ssp. caerulea / MsaG001943

KEGG: -
GO: -
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001943	RHN78770.1	87.261	314	40	0	60	373	1	314	0.0	536

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001943	tr\|A0A396JKH3\|A0A396JKH3_MEDTR	87.261	314	40	0	60	373	1	314	0.0	536

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TFs/TRs:

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Gene ID	Type	Classification
MsaG001943	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000062	MsaG001943	0.814714	2.313363e-51	4.439730e-49
MsaG000070	MsaG001943	0.807499	8.337333e-50	1.340573e-47
MsaG000083	MsaG001943	0.849816	4.823370e-60	2.597713e-57
MsaG000113	MsaG001943	0.856446	6.214671e-62	4.231773e-59
MsaG000140	MsaG001943	0.856088	7.904510e-62	5.312228e-59
MsaG000151	MsaG001943	0.804018	4.453616e-49	6.600119e-47
MsaG000153	MsaG001943	0.845481	7.423672e-59	3.455811e-56
MsaG000206	MsaG001943	0.803833	4.865069e-49	7.178696e-47
MsaG000224	MsaG001943	0.819360	2.115688e-52	4.575386e-50
MsaG000235	MsaG001943	0.824541	1.352686e-53	3.360287e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001943	MtrunA17_Chr1g0169561	87.261	314	40	0	60	373	1	314	0.0	536
MsaG001943	MtrunA17_Chr1g0169521	86.984	315	41	0	60	374	1	315	0.0	534
MsaG001943	MtrunA17_Chr1g0174001	75.258	194	35	2	194	374	1	194	1.35e-95	283
MsaG001943	MtrunA17_Chr7g0214511	56.596	235	76	8	153	375	67	287	4.66e-62	201
MsaG001943	MtrunA17_Chr1g0172861	37.425	334	118	14	64	374	12	277	1.38e-37	136
MsaG001943	MtrunA17_Chr1g0174871	34.899	298	135	12	96	375	29	285	2.67e-34	128
MsaG001943	MtrunA17_Chr1g0172961	34.982	283	116	12	64	327	12	245	5.75e-28	110
MsaG001943	MtrunA17_Chr1g0193731	36.296	270	84	10	130	374	16	222	5.08e-27	108
MsaG001943	MtrunA17_Chr1g0174861	39.286	196	91	7	157	340	45	224	2.34e-25	103
MsaG001943	MtrunA17_Chr4g0037041	37.714	175	61	5	72	243	10	139	7.55e-21	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 64 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATAGGGTTTGAACTT+AGG	0.336722	1:-28922947	None:intergenic
AACAAGGTGTGCTGCTAACA+AGG	0.519240	1:+28923713	MsaT001943.1:CDS
AACAGAAAAGAAACACTAAC+TGG	0.431171	1:-28923950	None:intergenic
AACTATAGGGTTTGAACTTA+GGG	0.333626	1:-28922946	None:intergenic
AACTGTAGATTCTTGAACCT+GGG	0.459451	1:-28923111	None:intergenic
AAGATGGGGCAGTCGGTGAG+TGG	0.586640	1:-28923453	None:intergenic
AATGAAATTCAGAAACAACA+AGG	0.709396	1:+28922917	MsaT001943.1:CDS
AATGAGAAGATGAAGGAACA+AGG	0.607433	1:+28923697	MsaT001943.1:CDS
AATTAGGGTCAAGAGTTGTC+AGG	0.507473	1:+28923881	MsaT001943.1:CDS
ACAAACATAATCATGATGAT+GGG	0.568114	1:+28923317	MsaT001943.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	28922830	28923957	28922830	ID=MsaG001943
Chr1	mRNA	28922830	28923957	28922830	ID=MsaT001943.1;Parent=MsaG001943
Chr1	exon	28922830	28923957	28922830	ID=MsaT001943.1.exon1;Parent=MsaT001943.1
Chr1	CDS	28922830	28923957	28922830	ID=cds.MsaT001943.1;Parent=MsaT001943.1

Gene Sequence

>MsaT001943.1

ATGAAGAGTTCTTTCTCATCATCCTATTTCCATTTTCATCATTCAAGTGATCACAAACCCGAAAACAACTATGAATATCATCATGATAATGAAATTCAGAAACAACAAGGTTCAAACCCTAAGTTCAAACCCTATAGTTTTTTTGTACACTCTCCTGAACCAAACACTCACAACATCATGAACAAACACTATTCTTCACCTTCTTCTCACCATTCGTTTGATAAACCCAAAAACAGCCATGATCATTATCACCAACAGACTCTTGAAGATGATAAGAAAAACCCAGGTTCAAGAATCTACAGTTGTGAGTTTTGTCACAAAACATTCACCTCTGGTAAATCACTTGGTGGTCACAAAACCATTCACCGCTCCTCTAACACTCTTCCTCAACCTAAAACAAACAAACAGATCCATGATCATGCTGTGAATAACGGCGGCACCTTGAAGAAGACTACAAAAATTACTTGGGTTTTTTCTTCATCTCTTCACAAACATAATCATGATGATGGGAAACTGAAGAACCATACATCTGATGTTTGTAACAAGGTTTTTTCATCCAATAGTGGTTTGAATGGACATATGAGATGGCATACTCAAAAGGTTTCGAAGAAGGGTGTGATTATCCACTCACCGACTGCCCCATCTTCCTTGGAACAAAGTCAACTTGAGTTTCTACCATCTACTGACTTGTCAAAGTACTTGCCGCCAATATCATATAAGACCAAAAAACGGAGTCCCAGGAGAAGGCGTATTTCTGATAATGATGAGGAAATTACTATTGCTGCAAAAACATTGTTATATATGTCTTATGGGGGTTATGAGGGATCAACTAAAAGGCAGAAGATTTCCAGCAATACGGTGGATGATAATGAGAAGATGAAGGAACAAGGTGTGCTGCTAACAAGGTGTGTTTGCCACAACGAAAAAAACTTGGTGCTGAGGTTGAAGATTCCTAAAGACAAGATTTTTCAAACATCGCAAGATTGCAAGGAACCTGCAGGATCTAGCTGTGATATTGAAGGCAAGAAGAATATTAGCGAAGATGAAACTGAATTAGGGTCAAGAGTTGTCAGGAATTTTGATCTGAATGAGCTTCCAAGTGATGATTTCGAAGATGAAACCAGTTAG

Protein sequence

>MsaT001943.1

MKSSFSSSYFHFHHSSDHKPENNYEYHHDNEIQKQQGSNPKFKPYSFFVHSPEPNTHNIMNKHYSSPSSHHSFDKPKNSHDHYHQQTLEDDKKNPGSRIYSCEFCHKTFTSGKSLGGHKTIHRSSNTLPQPKTNKQIHDHAVNNGGTLKKTTKITWVFSSSLHKHNHDDGKLKNHTSDVCNKVFSSNSGLNGHMRWHTQKVSKKGVIIHSPTAPSSLEQSQLEFLPSTDLSKYLPPISYKTKKRSPRRRRISDNDEEITIAAKTLLYMSYGGYEGSTKRQKISSNTVDDNEKMKEQGVLLTRCVCHNEKNLVLRLKIPKDKIFQTSQDCKEPAGSSCDIEGKKNISEDETELGSRVVRNFDLNELPSDDFEDETS*