AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG001988

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001988 MtrunA17_Chr1g0169761 97.207 179 5 0 1 179 1 179 2.83e-128 357
MsaG001988 MtrunA17_Chr8g0376821 86.826 167 22 0 1 167 1 167 1.26e-106 303
MsaG001988 MtrunA17_Chr4g0074101 75.510 196 31 1 1 179 1 196 1.23e-103 295
MsaG001988 MtrunA17_Chr1g0180591 79.888 179 36 0 1 179 1 179 4.07e-101 288
MsaG001988 MtrunA17_Chr1g0175601 79.444 180 36 1 1 179 1 180 3.31e-99 284
MsaG001988 MtrunA17_Chr1g0175611 79.762 168 34 0 1 168 1 168 4.72e-94 270
MsaG001988 MtrunA17_Chr8g0357771 58.857 175 72 0 1 175 1 175 9.32e-72 214
MsaG001988 MtrunA17_Chr8g0356071 57.143 168 66 2 1 168 1 162 9.94e-62 188
MsaG001988 MtrunA17_Chr4g0052061 39.024 164 88 3 1 164 1 152 3.72e-30 108
MsaG001988 MtrunA17_Chr3g0119901 42.975 121 67 1 1 119 8 128 2.21e-27 102
MsaG001988 MtrunA17_Chr3g0099411 40.580 138 79 2 2 136 9 146 4.15e-26 99.4
MsaG001988 MtrunA17_Chr1g0206991 42.500 120 67 1 2 119 9 128 4.51e-26 98.2
MsaG001988 MtrunA17_Chr3g0085241 43.860 114 62 1 1 112 40 153 9.04e-26 99.4
MsaG001988 MtrunA17_Chr4g0052081 45.794 107 55 2 1 104 1 107 4.59e-25 95.5
MsaG001988 MtrunA17_Chr1g0206721 60.870 69 27 0 2 70 9 77 1.87e-24 95.5
MsaG001988 MtrunA17_Chr3g0099421 59.420 69 28 0 2 70 34 102 2.95e-24 95.5
MsaG001988 MtrunA17_Chr1g0188671 45.545 101 53 1 2 100 47 147 4.96e-24 95.1
MsaG001988 MtrunA17_Chr5g0419601 55.714 70 31 0 1 70 8 77 1.08e-23 93.6
MsaG001988 MtrunA17_Chr2g0333981 39.823 113 66 1 1 113 11 121 1.29e-23 91.7
MsaG001988 MtrunA17_Chr2g0292791 59.420 69 28 0 2 70 9 77 2.12e-23 92.8
MsaG001988 MtrunA17_Chr1g0206701 59.420 69 28 0 2 70 9 77 2.19e-23 92.8
MsaG001988 MtrunA17_Chr1g0149391 38.583 127 75 2 2 126 9 134 3.87e-23 92.0
MsaG001988 MtrunA17_Chr8g0355091 57.971 69 29 0 2 70 9 77 5.42e-23 91.7
MsaG001988 MtrunA17_Chr1g0187361 56.338 71 31 0 2 72 9 79 1.22e-22 90.9
MsaG001988 MtrunA17_Chr3g0089141 56.522 69 30 0 2 70 9 77 1.42e-22 90.5
MsaG001988 MtrunA17_Chr5g0422421 54.930 71 32 0 2 72 9 79 1.46e-22 90.5
MsaG001988 MtrunA17_Chr1g0208561 56.522 69 30 0 2 70 9 77 1.56e-22 90.1
MsaG001988 MtrunA17_Chr8g0379021 47.674 86 43 1 2 85 12 97 1.80e-22 89.0
MsaG001988 MtrunA17_Chr3g0089151 42.342 111 60 2 2 109 9 118 7.60e-22 85.9
MsaG001988 MtrunA17_Chr4g0018951 53.846 65 30 0 16 80 26 90 1.39e-21 86.3
MsaG001988 MtrunA17_Chr2g0300421 55.072 69 31 0 2 70 9 77 2.11e-21 85.9
MsaG001988 MtrunA17_Chr1g0208581 53.623 69 32 0 2 70 9 77 2.80e-21 87.0
MsaG001988 MtrunA17_Chr2g0325971 55.072 69 31 0 2 70 9 77 5.73e-21 86.3
MsaG001988 MtrunA17_Chr2g0300441 41.176 119 67 2 2 118 9 126 6.65e-21 86.3
MsaG001988 MtrunA17_Chr5g0422941 48.052 77 40 0 2 78 9 85 7.29e-21 85.9
MsaG001988 MtrunA17_Chr2g0317451 52.174 69 33 0 2 70 9 77 8.10e-21 85.9
MsaG001988 MtrunA17_Chr2g0317481 52.174 69 33 0 2 70 9 77 8.53e-21 85.9
MsaG001988 MtrunA17_Chr1g0206691 65.455 55 19 0 18 72 8 62 5.77e-20 83.2
MsaG001988 MtrunA17_Chr1g0187351 60.000 55 22 0 18 72 8 62 2.47e-19 77.8
MsaG001988 MtrunA17_Chr4g0020221 41.284 109 56 2 1 102 1 108 2.57e-19 82.4
MsaG001988 MtrunA17_Chr8g0380021 33.540 161 95 4 1 161 17 165 1.60e-18 80.1
MsaG001988 MtrunA17_Chr4g0071601 48.750 80 41 0 1 80 11 90 3.43e-18 77.8
MsaG001988 MtrunA17_Chr7g0238991 57.377 61 26 0 10 70 29 89 3.48e-18 79.0
MsaG001988 MtrunA17_Chr5g0427401 50.000 72 36 0 1 72 1 72 3.74e-18 78.6
MsaG001988 MtrunA17_Chr5g0404951 50.000 62 31 0 1 62 1 62 6.22e-18 78.2
MsaG001988 MtrunA17_Chr2g0284911 41.346 104 58 1 1 104 16 116 9.76e-18 78.2
MsaG001988 MtrunA17_Chr3g0077501 34.161 161 94 4 1 161 1 149 1.09e-17 77.4
MsaG001988 MtrunA17_Chr3g0097101 45.977 87 45 1 1 87 16 100 1.26e-17 77.4
MsaG001988 MtrunA17_Chr7g0246431 39.423 104 60 1 1 104 1 101 1.65e-17 76.6
MsaG001988 MtrunA17_Chr2g0279821 39.091 110 66 1 1 110 1 109 1.95e-17 77.0
MsaG001988 MtrunA17_Chr1g0173161 46.154 78 39 1 1 78 1 75 2.34e-17 72.8
MsaG001988 MtrunA17_Chr8g0351041 49.275 69 35 0 1 69 1 69 6.12e-17 73.9
MsaG001988 MtrunA17_Chr3g0111841 60.417 48 19 0 18 65 12 59 1.13e-16 70.9
MsaG001988 MtrunA17_Chr5g0427921 53.333 60 28 0 1 60 1 60 1.84e-16 70.1
MsaG001988 MtrunA17_Chr8g0351051 47.826 69 36 0 1 69 1 69 2.25e-16 74.3
MsaG001988 MtrunA17_Chr8g0351031 49.275 69 35 0 1 69 1 69 3.18e-16 73.6
MsaG001988 MtrunA17_Chr4g0049541 47.826 69 36 0 1 69 1 69 4.68e-16 72.8
MsaG001988 MtrunA17_Chr3g0111931 52.727 55 26 0 18 72 6 60 5.89e-16 70.1
MsaG001988 MtrunA17_Chr1g0204111 46.479 71 38 0 1 71 17 87 9.83e-16 72.8
MsaG001988 MtrunA17_Chr5g0411691 37.500 120 67 3 1 120 1 112 9.95e-16 72.4
MsaG001988 MtrunA17_Chr4g0061671 32.824 131 73 3 1 116 1 131 1.07e-15 71.2
MsaG001988 MtrunA17_Chr4g0057151 46.377 69 37 0 1 69 1 69 1.29e-15 71.6
MsaG001988 MtrunA17_Chr4g0049901 47.692 65 34 0 1 65 27 91 5.41e-15 70.5
MsaG001988 MtrunA17_Chr7g0220121 35.417 96 56 2 1 90 1 96 7.79e-15 70.1
MsaG001988 MtrunA17_Chr1g0164791 45.070 71 37 1 1 69 1 71 8.04e-15 69.7
MsaG001988 MtrunA17_Chr8g0366231 36.634 101 50 2 1 90 1 98 8.17e-15 70.1
MsaG001988 MtrunA17_Chr2g0308251 42.254 71 40 1 1 70 1 71 1.20e-14 65.9
MsaG001988 MtrunA17_Chr3g0142191 46.875 64 34 0 1 64 1 64 1.61e-14 68.9
MsaG001988 MtrunA17_Chr5g0425191 54.386 57 26 0 1 57 1 57 1.70e-14 66.2
MsaG001988 MtrunA17_Chr5g0420081 49.123 57 29 0 1 57 1 57 1.79e-14 68.9
MsaG001988 MtrunA17_Chr4g0061691 41.429 70 40 1 1 69 1 70 2.04e-14 68.6
MsaG001988 MtrunA17_Chr3g0122251 39.796 98 54 1 1 98 1 93 2.32e-14 68.9
MsaG001988 MtrunA17_Chr5g0420091 50.877 57 28 0 1 57 1 57 2.39e-14 68.2
MsaG001988 MtrunA17_Chr4g0044071 51.724 58 28 0 1 58 1 58 2.80e-14 65.9
MsaG001988 MtrunA17_Chr3g0134451 45.070 71 38 1 1 70 1 71 3.19e-14 69.3
MsaG001988 MtrunA17_Chr5g0412271 50.877 57 28 0 1 57 1 57 3.36e-14 68.2
MsaG001988 MtrunA17_Chr5g0412461 50.877 57 28 0 1 57 1 57 3.56e-14 68.2
MsaG001988 MtrunA17_Chr1g0166611 68.182 44 14 0 15 58 19 62 3.89e-14 65.9
MsaG001988 MtrunA17_Chr7g0220111 50.877 57 28 0 1 57 1 57 4.12e-14 68.2
MsaG001988 MtrunA17_Chr8g0377561 50.877 57 28 0 1 57 1 57 4.43e-14 64.7
MsaG001988 MtrunA17_Chr4g0018421 44.444 72 39 1 1 71 1 72 7.88e-14 66.6
MsaG001988 MtrunA17_Chr7g0246381 43.478 69 34 1 1 64 1 69 9.45e-14 63.2
MsaG001988 MtrunA17_Chr6g0474371 36.364 99 59 2 1 95 1 99 1.02e-13 66.2
MsaG001988 MtrunA17_Chr5g0417661 50.000 54 27 0 1 54 56 109 1.13e-13 64.7
MsaG001988 MtrunA17_Chr6g0455511 50.877 57 28 0 1 57 1 57 1.85e-13 66.2
MsaG001988 MtrunA17_Chr1g0159661 36.923 65 41 0 1 65 1 65 2.23e-13 65.1
MsaG001988 MtrunA17_Chr3g0125241 38.462 65 40 0 1 65 26 90 4.08e-13 64.7
MsaG001988 MtrunA17_Chr8g0345001 36.066 122 66 2 3 120 19 132 4.86e-13 64.3
MsaG001988 MtrunA17_Chr3g0111831 50.000 52 26 0 18 69 20 71 7.37e-13 61.2
MsaG001988 MtrunA17_Chr4g0060841 48.148 54 28 0 1 54 1 54 8.75e-12 62.4
MsaG001988 MtrunA17_Chr3g0093131 33.019 106 62 2 19 115 36 141 1.20e-11 60.5
MsaG001988 MtrunA17_Chr6g0457851 40.000 60 36 0 1 60 11 70 6.35e-11 60.1
MsaG001988 MtrunA17_Chr1g0212151 34.940 83 46 1 1 75 1 83 9.69e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG001988 AT2G34440.1 44.186 172 84 5 1 161 1 171 1.01e-37 128
MsaG001988 AT3G66656.1 49.593 123 54 2 1 118 1 120 3.22e-32 114
MsaG001988 AT2G24840.1 44.000 125 62 2 1 121 62 182 4.44e-31 113
MsaG001988 AT5G60440.1 37.580 157 79 3 2 154 7 148 6.83e-26 100
MsaG001988 AT3G57230.2 34.177 158 91 3 1 158 1 145 5.93e-23 89.4
MsaG001988 AT1G01530.1 38.849 139 81 2 1 139 6 140 1.91e-22 90.9
MsaG001988 AT3G57230.1 33.333 165 97 3 1 165 1 152 2.30e-21 87.8
MsaG001988 AT3G57230.4 33.333 165 97 3 1 165 1 152 2.30e-21 87.8
MsaG001988 AT4G36590.1 33.333 174 78 4 2 160 7 157 4.07e-21 87.4
MsaG001988 AT5G13790.2 44.554 101 44 2 1 100 1 90 5.16e-20 84.7
MsaG001988 AT1G65360.1 35.714 112 72 0 1 112 6 117 1.14e-19 83.2
MsaG001988 AT1G47760.1 41.000 100 47 2 1 100 1 88 2.62e-19 81.3
MsaG001988 AT1G72350.1 56.338 71 29 1 2 72 43 111 9.35e-19 80.5
MsaG001988 AT5G13790.1 45.455 77 42 0 1 77 1 77 1.28e-18 80.9
MsaG001988 AT4G09960.1 32.919 161 96 4 1 161 1 149 2.42e-18 79.7
MsaG001988 AT4G09960.6 32.919 161 96 4 1 161 2 150 2.56e-18 79.7
MsaG001988 AT3G57390.3 50.725 69 34 0 1 69 1 69 3.08e-18 79.3
MsaG001988 AT4G09960.5 32.919 161 96 4 1 161 11 159 3.13e-18 79.3
MsaG001988 AT4G09960.3 32.919 161 96 4 1 161 27 175 3.54e-18 79.7
MsaG001988 AT3G61120.1 49.275 69 35 0 1 69 1 69 4.20e-18 79.3
MsaG001988 AT4G09960.2 36.090 133 77 3 1 133 1 125 4.36e-18 78.6
MsaG001988 AT2G45660.2 37.963 108 64 2 1 108 1 105 4.43e-18 77.4
MsaG001988 AT3G57390.1 50.725 69 34 0 1 69 1 69 6.58e-18 79.0
MsaG001988 AT3G04100.1 36.242 149 69 5 2 142 14 144 7.94e-18 77.8
MsaG001988 AT2G22630.1 50.725 69 34 0 1 69 1 69 8.37e-18 78.2
MsaG001988 AT2G22630.2 50.725 69 34 0 1 69 1 69 8.37e-18 78.2
MsaG001988 AT1G29962.1 46.575 73 39 0 2 74 8 80 1.20e-17 76.6
MsaG001988 AT4G09960.4 36.090 133 77 3 1 133 96 220 1.36e-17 79.0
MsaG001988 AT2G45660.1 37.963 108 64 2 1 108 1 105 2.17e-17 76.6
MsaG001988 AT4G37940.1 50.725 69 34 0 1 69 1 69 3.22e-17 76.6
MsaG001988 AT1G28460.1 45.205 73 40 0 2 74 8 80 4.25e-17 75.1
MsaG001988 AT4G37940.4 50.725 69 34 0 1 69 1 69 4.28e-17 75.9
MsaG001988 AT4G22950.2 47.826 69 36 0 1 69 1 69 4.35e-17 75.1
MsaG001988 AT3G58780.1 39.623 106 61 1 1 106 16 118 5.44e-17 76.3
MsaG001988 AT3G58780.5 39.623 106 61 1 1 106 22 124 6.64e-17 76.3
MsaG001988 AT4G37940.3 39.167 120 66 3 1 120 1 113 7.30e-17 74.3
MsaG001988 AT2G42830.1 38.679 106 62 1 1 106 16 118 1.28e-16 75.1
MsaG001988 AT2G45650.1 47.826 69 36 0 1 69 1 69 1.33e-16 75.5
MsaG001988 AT3G58780.4 39.623 106 61 1 1 106 16 118 1.33e-16 75.9
MsaG001988 AT2G42830.2 38.679 106 62 1 1 106 16 118 1.43e-16 75.1
MsaG001988 AT3G58780.2 44.828 87 35 1 1 74 16 102 1.47e-16 75.1
MsaG001988 AT4G24540.1 38.947 95 57 1 1 95 1 94 1.52e-16 74.7
MsaG001988 AT5G65070.4 43.421 76 42 1 1 75 1 76 1.79e-16 72.8
MsaG001988 AT5G51860.1 42.169 83 48 0 1 83 1 83 1.94e-16 74.3
MsaG001988 AT5G51860.2 42.169 83 48 0 1 83 1 83 1.99e-16 73.9
MsaG001988 AT5G65070.1 43.421 76 42 1 1 75 1 76 3.45e-16 73.2
MsaG001988 AT5G10140.2 42.000 100 52 3 1 95 1 99 3.51e-16 72.4
MsaG001988 AT4G22950.3 47.826 69 36 0 1 69 1 69 4.01e-16 73.6
MsaG001988 AT4G22950.1 47.826 69 36 0 1 69 1 69 4.01e-16 73.6
MsaG001988 AT5G51870.1 47.826 69 36 0 1 69 1 69 4.76e-16 73.2
MsaG001988 AT5G10140.3 42.000 100 52 3 1 95 1 99 5.31e-16 72.4
MsaG001988 AT5G62165.17 36.538 104 63 2 1 104 1 101 5.63e-16 71.6
MsaG001988 AT5G62165.12 36.538 104 63 2 1 104 1 101 5.63e-16 71.6
MsaG001988 AT5G62165.11 36.538 104 63 2 1 104 1 101 5.63e-16 71.6
MsaG001988 AT5G51870.2 47.826 69 36 0 1 69 1 69 5.81e-16 72.0
MsaG001988 AT1G17310.1 48.148 81 35 2 17 92 63 141 7.23e-16 72.8
MsaG001988 AT4G18960.1 46.154 78 42 0 2 79 18 95 7.59e-16 73.2
MsaG001988 AT5G62165.6 36.538 104 63 2 1 104 1 101 8.84e-16 71.2
MsaG001988 AT5G62165.9 36.538 104 63 2 1 104 1 101 8.84e-16 71.2
MsaG001988 AT5G62165.7 36.538 104 63 2 1 104 1 101 8.84e-16 71.2
MsaG001988 AT5G62165.8 36.538 104 63 2 1 104 1 101 8.84e-16 71.2
MsaG001988 AT5G62165.13 36.538 104 63 2 1 104 1 101 8.84e-16 71.2
MsaG001988 AT1G17310.2 48.148 81 35 2 17 92 74 152 9.04e-16 72.8
MsaG001988 AT5G10140.4 46.753 77 38 2 1 75 1 76 9.11e-16 71.6
MsaG001988 AT5G51870.4 47.826 69 36 0 1 69 1 69 9.18e-16 72.4
MsaG001988 AT5G51870.5 47.826 69 36 0 1 69 24 92 9.43e-16 72.0
MsaG001988 AT5G65070.2 43.421 76 42 1 1 75 1 76 1.12e-15 72.4
MsaG001988 AT5G10140.1 46.753 77 38 2 1 75 1 76 1.14e-15 71.6
MsaG001988 AT5G51870.3 47.826 69 36 0 1 69 11 79 1.33e-15 72.4
MsaG001988 AT2G22540.3 46.377 69 37 0 1 69 1 69 1.75e-15 72.0
MsaG001988 AT2G22540.1 46.377 69 37 0 1 69 1 69 1.75e-15 72.0
MsaG001988 AT5G65070.5 43.421 76 42 1 1 75 1 76 1.93e-15 71.6
MsaG001988 AT1G77980.1 49.296 71 35 1 1 70 1 71 2.25e-15 72.8
MsaG001988 AT1G71692.1 37.113 97 60 1 1 96 1 97 2.39e-15 71.2
MsaG001988 AT5G65070.3 49.231 65 31 1 1 63 1 65 2.45e-15 71.6
MsaG001988 AT2G14210.1 55.172 58 26 0 1 58 1 58 2.66e-15 71.6
MsaG001988 AT5G62165.10 34.615 104 65 1 1 104 1 101 2.75e-15 70.9
MsaG001988 AT5G62165.4 34.615 104 65 1 1 104 1 101 2.75e-15 70.9
MsaG001988 AT4G11880.2 39.474 114 63 3 1 108 1 114 2.93e-15 70.5
MsaG001988 AT4G11880.3 39.474 114 63 3 1 108 1 114 2.93e-15 70.5
MsaG001988 AT5G62165.3 36.538 104 63 2 1 104 1 101 2.99e-15 70.9
MsaG001988 AT5G62165.1 36.538 104 63 2 1 104 1 101 2.99e-15 70.9
MsaG001988 AT5G62165.2 36.538 104 63 2 1 104 1 101 2.99e-15 70.9
MsaG001988 AT2G14210.2 55.172 58 26 0 1 58 1 58 3.18e-15 71.2
MsaG001988 AT5G20240.2 45.455 66 36 0 1 66 1 66 4.11e-15 69.3
MsaG001988 AT5G62165.14 40.476 84 46 1 1 80 1 84 6.29e-15 67.8
MsaG001988 AT1G22130.1 47.887 71 36 1 1 70 1 71 7.08e-15 71.6
MsaG001988 AT1G77950.3 34.940 166 90 7 1 151 1 163 7.26e-15 70.5
MsaG001988 AT1G77950.2 34.940 166 90 7 1 151 1 163 7.26e-15 70.5
MsaG001988 AT1G77950.1 34.940 166 90 7 1 151 1 163 7.26e-15 70.5
MsaG001988 AT1G77950.4 34.940 166 90 7 1 151 1 163 7.26e-15 70.5
MsaG001988 AT5G20240.1 45.455 66 36 0 1 66 1 66 7.35e-15 69.7
MsaG001988 AT3G58780.3 54.237 59 27 0 1 59 16 74 8.73e-15 70.9
MsaG001988 AT3G30260.1 38.235 102 53 3 1 93 1 101 9.12e-15 70.5
MsaG001988 AT3G54340.1 40.476 84 35 1 1 69 1 84 1.43e-14 69.3
MsaG001988 AT4G11880.4 39.474 114 63 3 1 108 1 114 1.49e-14 69.3
MsaG001988 AT4G11880.1 39.474 114 63 3 1 108 1 114 1.49e-14 69.3
MsaG001988 AT2G22540.2 52.632 57 27 0 1 57 1 57 1.62e-14 69.3
MsaG001988 AT1G24260.2 37.755 98 56 1 1 98 1 93 4.08e-14 68.6
MsaG001988 AT1G24260.3 37.755 98 56 1 1 98 1 93 4.72e-14 68.2
MsaG001988 AT1G69120.2 50.000 58 29 0 1 58 1 58 5.57e-14 67.8
MsaG001988 AT1G46408.1 50.000 76 32 3 1 70 1 76 5.94e-14 68.2
MsaG001988 AT5G65080.3 41.558 77 43 1 1 75 8 84 5.94e-14 67.0
MsaG001988 AT2G03710.3 50.877 57 28 0 1 57 1 57 5.96e-14 67.0
MsaG001988 AT5G60910.1 49.123 57 29 0 1 57 1 57 7.10e-14 67.8
MsaG001988 AT1G69120.1 50.000 58 29 0 1 58 1 58 1.07e-13 67.4
MsaG001988 AT1G28450.1 41.096 73 43 0 2 74 8 80 1.17e-13 66.2
MsaG001988 AT1G26310.1 48.276 58 30 0 1 58 1 58 1.19e-13 67.4
MsaG001988 AT5G15800.1 50.877 57 28 0 1 57 1 57 1.39e-13 67.0
MsaG001988 AT3G02310.2 50.877 57 28 0 1 57 1 57 1.44e-13 66.2
MsaG001988 AT5G23260.2 61.224 49 19 0 1 49 1 49 1.45e-13 67.0
MsaG001988 AT5G23260.3 61.224 49 19 0 1 49 1 49 1.53e-13 66.6
MsaG001988 AT5G23260.4 61.224 49 19 0 1 49 17 65 1.58e-13 67.0
MsaG001988 AT5G23260.1 61.224 49 19 0 1 49 17 65 1.64e-13 67.0
MsaG001988 AT5G15800.2 50.877 57 28 0 1 57 1 57 1.97e-13 67.0
MsaG001988 AT2G03710.1 50.877 57 28 0 1 57 1 57 2.14e-13 66.6
MsaG001988 AT2G03710.2 50.877 57 28 0 1 57 1 57 2.25e-13 66.6
MsaG001988 AT5G65050.2 49.091 55 28 0 1 55 1 55 2.29e-13 65.5
MsaG001988 AT5G65060.3 50.909 55 27 0 1 55 1 55 2.33e-13 65.5
MsaG001988 AT3G02310.1 50.877 57 28 0 1 57 1 57 2.97e-13 66.2
MsaG001988 AT1G24260.1 50.877 57 28 0 1 57 1 57 3.15e-13 66.2
MsaG001988 AT5G65060.2 50.909 55 27 0 1 55 1 55 4.00e-13 64.7
MsaG001988 AT5G65060.1 50.909 55 27 0 1 55 1 55 4.19e-13 65.1
MsaG001988 AT1G18750.4 42.466 73 40 1 1 71 1 73 5.04e-13 66.6
MsaG001988 AT5G65080.2 48.214 56 29 0 1 56 8 63 5.04e-13 64.7
MsaG001988 AT1G69540.1 45.833 72 38 1 1 71 1 72 5.33e-13 66.2
MsaG001988 AT1G18750.3 42.466 73 40 1 1 71 1 73 5.68e-13 66.2
MsaG001988 AT1G18750.1 42.466 73 40 1 1 71 1 73 5.71e-13 66.2
MsaG001988 AT5G65050.5 49.091 55 28 0 1 55 1 55 6.99e-13 64.3
MsaG001988 AT5G65050.3 49.091 55 28 0 1 55 1 55 7.23e-13 64.3
MsaG001988 AT1G69540.2 45.833 72 38 1 1 71 1 72 7.68e-13 65.9
MsaG001988 AT5G65050.1 49.091 55 28 0 1 55 1 55 8.09e-13 63.9
MsaG001988 AT2G03060.3 54.000 50 23 0 1 50 1 50 3.61e-12 63.9
MsaG001988 AT2G03060.7 54.000 50 23 0 1 50 1 50 3.61e-12 63.9
MsaG001988 AT2G03060.1 54.000 50 23 0 1 50 1 50 3.61e-12 63.9
MsaG001988 AT2G03060.2 54.000 50 23 0 1 50 1 50 3.75e-12 63.9
MsaG001988 AT2G26320.1 33.333 84 50 1 1 78 17 100 1.15e-11 59.3
MsaG001988 AT5G04640.1 39.241 79 42 2 1 73 1 79 1.32e-11 62.4
MsaG001988 AT5G49490.1 41.667 72 38 1 3 70 46 117 2.05e-11 61.6
MsaG001988 AT4G37435.1 45.614 57 31 0 1 57 1 57 2.08e-11 60.1
MsaG001988 AT5G49420.1 40.278 72 39 1 3 70 8 79 6.40e-11 60.5
MsaG001988 AT5G38620.1 40.278 72 39 1 3 70 6 77 6.79e-11 60.1

Find 35 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTCCCACCACAGGTTCC+TGG 0.292424 1:-29770933 None:intergenic
GGTGATAGACCTTACTCTTT+TGG 0.312324 1:+29770604 MsaT001988.1:CDS
CGCTTGCATCAGCCTCTTGT+TGG 0.343429 1:-29770663 None:intergenic
TAAAAGCGAAATCTGCAAAA+AGG 0.347726 1:+29770953 MsaT001988.1:CDS
GACTTCTGCTCCGCACAAAA+TGG 0.371305 1:-29770560 None:intergenic
CAGAATCTCATCATGATTCT+CGG 0.389581 1:-29770785 None:intergenic
CATCAGAAGATGGGTTTCCT+TGG 0.395024 1:-29770690 None:intergenic
ACATTCTCAAAGCGTCGAAC+GGG 0.411690 1:+29770511 MsaT001988.1:CDS
AGCCTCTTGTTGGAGATACT+TGG 0.412863 1:-29770653 None:intergenic
CATACAAAGAGCTTCAAGAT+TGG 0.419220 1:+29770857 MsaT001988.1:CDS
ATACAAAGAGCTTCAAGATT+GGG 0.435727 1:+29770858 MsaT001988.1:CDS
ATCAGAAGATGGGTTTCCTT+GGG 0.455461 1:-29770689 None:intergenic
ATCTTGGGAGCATCAGAAGA+TGG 0.459721 1:-29770700 None:intergenic
TATTCCCACCACAGGTTCCT+GGG 0.471586 1:-29770932 None:intergenic
GCTGCAACAACGTCAACACC+TGG 0.475787 1:-29770631 None:intergenic
TCTTGCCCAGGAACCTGTGG+TGG 0.487526 1:+29770927 MsaT001988.1:CDS
GCTATTGTTGTGTTCTCTCC+CGG 0.488473 1:+29770583 MsaT001988.1:CDS
AATGTAACTTGCCTCGTGTT+GGG 0.491629 1:-29770493 None:intergenic
TACATTCTCAAAGCGTCGAA+CGG 0.497566 1:+29770510 MsaT001988.1:CDS
ATCTTCTGATGCTCCCAAGA+TGG 0.505264 1:+29770702 MsaT001988.1:CDS
CCTGGGTGGCCAAAAGAGTA+AGG 0.507377 1:-29770613 None:intergenic
GTATATGATGCTTCTTGCCC+AGG 0.514924 1:+29770915 MsaT001988.1:CDS
TCTTGGGAGCATCAGAAGAT+GGG 0.537493 1:-29770699 None:intergenic
CTTGCCCAGGAACCTGTGGT+GGG 0.567773 1:+29770928 MsaT001988.1:CDS
GCTTCTTGCCCAGGAACCTG+TGG 0.568929 1:+29770924 MsaT001988.1:CDS
AAAAGAGTAAGGTCTATCAC+CGG 0.577324 1:-29770602 None:intergenic
GAATGTAACTTGCCTCGTGT+TGG 0.578413 1:-29770494 None:intergenic
GAATCATGATGAGATTCTGA+AGG 0.612338 1:+29770789 MsaT001988.1:CDS
AGCCAAGTATCTCCAACAAG+AGG 0.626535 1:+29770651 MsaT001988.1:CDS
AAAGAGTAAGGTCTATCACC+GGG 0.631505 1:-29770601 None:intergenic
CTGCAACAACGTCAACACCT+GGG 0.651193 1:-29770630 None:intergenic
GCTGATGCAAGCGATTCCCA+AGG 0.659023 1:+29770673 MsaT001988.1:CDS
ATACTGACACAAATTCGAGA+AGG 0.659731 1:+29770751 MsaT001988.1:CDS
CAACAACGTCAACACCTGGG+TGG 0.693277 1:-29770627 None:intergenic
TCGTGAAAGATCCCAACACG+AGG 0.703551 1:+29770482 MsaT001988.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 29770454 29770993 29770454 ID=MsaG001988
Chr1 mRNA 29770454 29770993 29770454 ID=MsaT001988.1;Parent=MsaG001988
Chr1 exon 29770454 29770993 29770454 ID=MsaT001988.1.exon1;Parent=MsaT001988.1
Chr1 CDS 29770454 29770993 29770454 ID=cds.MsaT001988.1;Parent=MsaT001988.1
Gene Sequence

>MsaT001988.1

ATGGGTCGTCGCAAAATTAAGATTGAGATCGTGAAAGATCCCAACACGAGGCAAGTTACATTCTCAAAGCGTCGAACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATTTTGTGCGGAGCAGAAGTCGCTATTGTTGTGTTCTCTCCCGGTGATAGACCTTACTCTTTTGGCCACCCAGGTGTTGACGTTGTTGCAGCCAAGTATCTCCAACAAGAGGCTGATGCAAGCGATTCCCAAGGAAACCCATCTTCTGATGCTCCCAAGATGGAAAAATTAAATCTAGAACTTGCTGAAATACTGACACAAATTCGAGAAGGTGAAAAGCAAGCCGAGAATCATGATGAGATTCTGAAGGAAAATGATGTGACAAAACTCTCTGTGCTTAAAGAATTGAGAGATTCATACAAAGAGCTTCAAGATTGGGTCAAATTACGTCTTAGTGATATTGAAATATCAGAGTATATGATGCTTCTTGCCCAGGAACCTGTGGTGGGAATAAAAGCGAAATCTGCAAAAAGGAAAAGAAGAAGAAATTGA
Protein sequence

>MsaT001988.1

MGRRKIKIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGDRPYSFGHPGVDVVAAKYLQQEADASDSQGNPSSDAPKMEKLNLELAEILTQIREGEKQAENHDEILKENDVTKLSVLKELRDSYKELQDWVKLRLSDIEISEYMMLLAQEPVVGIKAKSAKRKRRRN*