AlfalfaGEDB | MsaG001990

M. sativa ssp. caerulea / MsaG001990

KEGG: K09260
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001990	XP_013467229.1	90.244	164	16	0	1	164	1	164	2.56e-101	308

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001990	sp\|O64703\|AGL29_ARATH	43.860	171	86	5	1	161	1	171	1.02e-31	121

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001990	tr\|A0A072VIJ3\|A0A072VIJ3_MEDTR	90.244	164	16	0	1	164	1	164	1.22e-101	308

TFs/TRs:

Gene ID	Type	Classification
MsaG001990	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000052	MsaG001990	0.800227	2.658897e-48	3.613402e-46
MsaG000238	MsaG001990	0.801329	1.588066e-48	2.212613e-46
MsaG000366	MsaG001990	0.827711	2.403424e-54	6.519349e-52
MsaG000528	MsaG001990	0.800506	2.334870e-48	3.193126e-46
MsaG000530	MsaG001990	0.800358	2.502103e-48	3.410450e-46
MsaG000643	MsaG001990	0.818473	3.357091e-52	7.093094e-50
MsaG000766	MsaG001990	0.801146	1.730393e-48	2.400908e-46
MsaG000898	MsaG001990	0.822691	3.647928e-53	8.618428e-51
MsaG001192	MsaG001990	0.800964	1.884753e-48	2.604295e-46
MsaG001514	MsaG001990	0.803062	7.014618e-49	1.016766e-46
MsaG002681	MsaG001990	0.812036	8.910281e-51	1.599336e-48
MsaG002814	MsaG001990	0.825666	7.356121e-54	1.884678e-51
MsaG002878	MsaG001990	0.808035	6.420869e-50	1.045807e-47
MsaG003684	MsaG001990	0.826530	4.591903e-54	1.205118e-51
MsaG003810	MsaG001990	0.825350	8.730429e-54	2.217407e-51
MsaG004157	MsaG001990	0.814531	2.538618e-51	4.849599e-49
MsaG004849	MsaG001990	0.813062	5.329385e-51	9.813238e-49
MsaG005521	MsaG001990	0.842656	4.213766e-58	1.789602e-55
MsaG005979	MsaG001990	0.818519	3.277838e-52	6.934082e-50
MsaG006116	MsaG001990	0.862837	7.574836e-64	6.568675e-61
MsaG006120	MsaG001990	0.802398	9.604155e-49	1.371102e-46
MsaG006178	MsaG001990	0.802224	1.042466e-48	1.482265e-46
MsaG006412	MsaG001990	0.802750	8.130136e-49	1.170023e-46
MsaG006517	MsaG001990	0.823633	2.203893e-53	5.341585e-51
MsaG006590	MsaG001990	0.813360	4.588293e-51	8.511462e-49
MsaG006576	MsaG001990	0.800751	2.081744e-48	2.862853e-46
MsaG006788	MsaG001990	0.816896	7.588046e-52	1.539378e-49
MsaG007291	MsaG001990	0.820385	1.236822e-52	2.748064e-50
MsaG007911	MsaG001990	0.815084	1.916834e-51	3.713206e-49
MsaG008081	MsaG001990	0.802609	8.693952e-49	1.247157e-46
MsaG008442	MsaG001990	0.800254	2.625843e-48	3.570669e-46
MsaG008430	MsaG001990	0.802118	1.095904e-48	1.554453e-46
MsaG008682	MsaG001990	0.808772	4.478203e-50	7.424504e-48
MsaG008815	MsaG001990	0.829120	1.102516e-54	3.111271e-52
MsaG009094	MsaG001990	0.817925	4.461492e-52	9.294260e-50
MsaG009178	MsaG001990	0.807454	8.521552e-50	1.368691e-47
MsaG009230	MsaG001990	0.813066	5.319130e-51	9.795275e-49
MsaG009472	MsaG001990	0.808772	4.478203e-50	7.424504e-48
MsaG009453	MsaG001990	0.817971	4.355501e-52	9.084251e-50
MsaG009765	MsaG001990	0.819052	2.484218e-52	5.329042e-50
MsaG010274	MsaG001990	0.802278	1.016414e-48	1.447015e-46
MsaG010452	MsaG001990	0.840659	1.408610e-57	5.613783e-55
MsaG011467	MsaG001990	0.818972	2.590626e-52	5.545568e-50
MsaG011580	MsaG001990	0.808733	4.565924e-50	7.562879e-48
MsaG011639	MsaG001990	0.818902	2.685970e-52	5.739022e-50
MsaG012117	MsaG001990	0.819698	1.772996e-52	3.868233e-50
MsaG012354	MsaG001990	0.801542	1.437183e-48	2.012036e-46
MsaG041878	MsaG001990	0.804507	3.526763e-49	5.285943e-47
MsaG042050	MsaG001990	0.803171	6.661326e-49	9.680089e-47
MsaG042575	MsaG001990	0.802092	1.109179e-48	1.572380e-46
MsaG042700	MsaG001990	0.814567	2.492898e-51	4.766539e-49
MsaG042741	MsaG001990	0.805512	2.178471e-49	3.342117e-47
MsaG042911	MsaG001990	0.807188	9.695412e-50	1.547435e-47
MsaG043285	MsaG001990	0.803781	4.985046e-49	7.347013e-47
MsaG043390	MsaG001990	0.839669	2.546675e-57	9.838724e-55
MsaG043815	MsaG001990	0.809421	3.256593e-50	5.484232e-48
MsaG043921	MsaG001990	0.802070	1.121106e-48	1.588507e-46
MsaG044305	MsaG001990	0.832676	1.493417e-55	4.669711e-53
MsaG044315	MsaG001990	0.804385	3.739187e-49	5.588571e-47
MsaG044318	MsaG001990	0.807535	8.193270e-50	1.318526e-47
MsaG044369	MsaG001990	0.807243	9.441458e-50	1.508808e-47
MsaG044623	MsaG001990	0.813415	4.463113e-51	8.290762e-49
MsaG044665	MsaG001990	0.800892	1.949525e-48	2.689412e-46
MsaG044828	MsaG001990	0.845511	7.284483e-59	3.394408e-56
MsaG045303	MsaG001990	0.801587	1.407301e-48	1.972180e-46
MsaG045323	MsaG001990	0.815862	1.289089e-51	2.546892e-49
MsaG045357	MsaG001990	0.807639	7.787362e-50	1.256311e-47
MsaG045601	MsaG001990	0.818203	3.863703e-52	8.106789e-50
MsaG045672	MsaG001990	0.801131	1.743162e-48	2.417749e-46
MsaG045894	MsaG001990	0.854230	2.725974e-61	1.713416e-58
MsaG046105	MsaG001990	0.816598	8.842300e-52	1.780088e-49
MsaG046153	MsaG001990	0.822763	3.509938e-53	8.308884e-51
MsaG046214	MsaG001990	0.810833	1.621827e-50	2.826470e-48
MsaG046215	MsaG001990	0.802431	9.452788e-49	1.350512e-46
MsaG046281	MsaG001990	0.818065	4.150121e-52	8.676623e-50
MsaG046289	MsaG001990	0.800779	2.054813e-48	2.827599e-46
MsaG046329	MsaG001990	0.808896	4.214337e-50	7.007925e-48
MsaG046867	MsaG001990	0.837892	7.298728e-57	2.667959e-54
MsaG046944	MsaG001990	0.800910	1.933273e-48	2.668062e-46
MsaG001837	MsaG001990	0.800860	1.978878e-48	2.727988e-46
MsaG001990	MsaG001943	0.829484	9.005598e-55	2.568054e-52
MsaG001990	MsaG002769	0.835618	2.756780e-56	9.406730e-54
MsaG001990	MsaG000819	0.823578	2.269787e-53	5.492899e-51
MsaG001990	MsaG007923	0.819700	1.771216e-52	3.864520e-50
MsaG001990	MsaG010441	0.821131	8.348675e-53	1.891958e-50
MsaG001990	MsaG009149	0.801638	1.373908e-48	1.927659e-46
MsaG001990	MsaG007436	0.815777	1.346234e-51	2.654050e-49
MsaG001990	MsaG013001	0.836712	1.458090e-56	5.141648e-54
MsaG001990	MsaG012532	0.852720	7.362036e-61	4.385983e-58
MsaG001990	MsaG016849	0.808613	4.842427e-50	7.997312e-48
MsaG001990	MsaG013067	0.800123	2.791951e-48	3.785251e-46
MsaG001990	MsaG020007	0.816993	7.216608e-52	1.467730e-49
MsaG001990	MsaG018951	0.809817	2.679613e-50	4.555977e-48
MsaG001990	MsaG019698	0.805890	1.816068e-49	2.811036e-47
MsaG001990	MsaG027793	0.827175	3.226715e-54	8.621826e-52
MsaG001990	MsaG032697	0.816819	7.892772e-52	1.598036e-49
MsaG001990	MsaG032920	0.811139	1.392871e-50	2.445681e-48
MsaG001990	MsaG033056	0.836799	1.386462e-56	4.901762e-54
MsaG001990	MsaG033837	0.806726	1.213173e-49	1.915286e-47
MsaG001990	MsaG031467	0.802795	7.959885e-49	1.146703e-46
MsaG001990	MsaG032406	0.851986	1.188543e-60	6.901639e-58
MsaG001990	MsaG032081	0.826154	5.640401e-54	1.464931e-51
MsaG001990	MsaG032520	0.819747	1.727932e-52	3.774720e-50
MsaG001990	MsaG035246	0.811088	1.428680e-50	2.505471e-48
MsaG001990	MsaG044771	0.805137	2.608951e-49	3.967949e-47
MsaG001990	MsaG046894	0.830694	4.578001e-55	1.351377e-52
MsaG012889	MsaG001990	0.807624	7.843807e-50	1.264980e-47
MsaG012994	MsaG001990	0.819661	1.807097e-52	3.938706e-50
MsaG013155	MsaG001990	0.818691	2.997407e-52	6.369187e-50
MsaG013630	MsaG001990	0.804104	4.275227e-49	6.348512e-47
MsaG013846	MsaG001990	0.801948	1.187228e-48	1.677524e-46
MsaG014039	MsaG001990	0.800460	2.385933e-48	3.259599e-46
MsaG014208	MsaG001990	0.815416	1.619238e-51	3.163249e-49
MsaG015248	MsaG001990	0.800345	2.517064e-48	3.429795e-46
MsaG016250	MsaG001990	0.831861	2.371055e-55	7.241075e-53
MsaG016646	MsaG001990	0.827308	2.998617e-54	8.042403e-52
MsaG016811	MsaG001990	0.807938	6.733149e-50	1.094122e-47
MsaG017552	MsaG001990	0.843086	3.241229e-58	1.395625e-55
MsaG018059	MsaG001990	0.802385	9.662248e-49	1.378988e-46
MsaG018263	MsaG001990	0.807153	9.865355e-50	1.573204e-47
MsaG018488	MsaG001990	0.803458	5.813096e-49	8.503415e-47
MsaG018613	MsaG001990	0.807796	7.213690e-50	1.168210e-47
MsaG018780	MsaG001990	0.807247	9.422894e-50	1.505976e-47
MsaG018876	MsaG001990	0.812344	7.639121e-51	1.381664e-48
MsaG019624	MsaG001990	0.807250	9.411212e-50	1.504200e-47
MsaG019680	MsaG001990	0.820204	1.359563e-52	3.006544e-50
MsaG019783	MsaG001990	0.808576	4.931023e-50	8.136519e-48
MsaG020648	MsaG001990	0.801746	1.305528e-48	1.836251e-46
MsaG021108	MsaG001990	0.812347	7.629360e-51	1.379991e-48
MsaG021098	MsaG001990	0.800345	2.517064e-48	3.429795e-46
MsaG022066	MsaG001990	0.812703	6.381819e-51	1.164624e-48
MsaG022215	MsaG001990	0.801888	1.221266e-48	1.723316e-46
MsaG022456	MsaG001990	0.839056	3.667717e-57	1.390179e-54
MsaG023223	MsaG001990	0.800902	1.939793e-48	2.676647e-46
MsaG023230	MsaG001990	0.801312	1.601219e-48	2.229997e-46
MsaG023680	MsaG001990	0.809764	2.751482e-50	4.672004e-48
MsaG023786	MsaG001990	0.800290	2.582400e-48	3.514374e-46
MsaG023952	MsaG001990	0.801716	1.324489e-48	1.861596e-46
MsaG024831	MsaG001990	0.811602	1.106600e-50	1.965213e-48
MsaG025489	MsaG001990	0.820431	1.206852e-52	2.684877e-50
MsaG026937	MsaG001990	0.820631	1.086389e-52	2.429499e-50
MsaG027690	MsaG001990	0.810568	1.848902e-50	3.201447e-48
MsaG027957	MsaG001990	0.803614	5.398142e-49	7.924921e-47
MsaG027991	MsaG001990	0.804481	3.570328e-49	5.348016e-47
MsaG028286	MsaG001990	0.809140	3.738864e-50	6.253871e-48
MsaG028328	MsaG001990	0.811711	1.048308e-50	1.866629e-48
MsaG028417	MsaG001990	0.803018	7.161491e-49	1.037018e-46
MsaG028510	MsaG001990	0.802772	8.047036e-49	1.158634e-46
MsaG028487	MsaG001990	0.802246	1.031842e-48	1.467875e-46
MsaG028688	MsaG001990	0.803226	6.491351e-49	9.444922e-47
MsaG028760	MsaG001990	0.806933	1.097464e-49	1.741000e-47
MsaG029082	MsaG001990	0.810252	2.162605e-50	3.715855e-48
MsaG029083	MsaG001990	0.800977	1.872952e-48	2.588757e-46
MsaG029193	MsaG001990	0.818946	2.625339e-52	5.616115e-50
MsaG029201	MsaG001990	0.806329	1.470102e-49	2.299278e-47
MsaG029341	MsaG001990	0.827038	3.478977e-54	9.260057e-52
MsaG029362	MsaG001990	0.807227	9.516869e-50	1.520259e-47
MsaG029478	MsaG001990	0.805029	2.746692e-49	4.167130e-47
MsaG029613	MsaG001990	0.814565	2.495356e-51	4.771014e-49
MsaG029781	MsaG001990	0.824347	1.501264e-53	3.709919e-51
MsaG030781	MsaG001990	0.805921	1.789441e-49	2.771777e-47
MsaG030866	MsaG001990	0.819158	2.351268e-52	5.057847e-50
MsaG031021	MsaG001990	0.804073	4.339425e-49	6.439099e-47
MsaG031818	MsaG001990	0.811536	1.143828e-50	2.028006e-48
MsaG031819	MsaG001990	0.805247	2.475001e-49	3.773784e-47
MsaG032200	MsaG001990	0.815943	1.236979e-51	2.449063e-49
MsaG033450	MsaG001990	0.808461	5.214865e-50	8.581210e-48
MsaG034239	MsaG001990	0.800811	2.024560e-48	2.787921e-46
MsaG034373	MsaG001990	0.800309	2.559420e-48	3.484669e-46
MsaG034398	MsaG001990	0.818304	3.665442e-52	7.710723e-50
MsaG034544	MsaG001990	0.809205	3.621137e-50	6.066130e-48
MsaG035152	MsaG001990	0.829213	1.046830e-54	2.961814e-52
MsaG035155	MsaG001990	0.826940	3.669993e-54	9.742380e-52
MsaG035731	MsaG001990	0.807070	1.026827e-49	1.634265e-47
MsaG036108	MsaG001990	0.801771	1.290674e-48	1.816333e-46
MsaG036421	MsaG001990	0.825507	8.016993e-54	2.045025e-51
MsaG036428	MsaG001990	0.813545	4.179511e-51	7.789305e-49
MsaG037868	MsaG001990	0.810912	1.559415e-50	2.722888e-48
MsaG039828	MsaG001990	0.806652	1.257570e-49	1.981914e-47
MsaG040313	MsaG001990	0.830752	4.430170e-55	1.309972e-52
MsaG040314	MsaG001990	0.830251	5.865709e-55	1.709783e-52
MsaG040354	MsaG001990	0.814544	2.521645e-51	4.818780e-49
MsaG040539	MsaG001990	0.802418	9.512481e-49	1.358643e-46
MsaG040673	MsaG001990	0.825640	7.458950e-54	1.909634e-51
MsaG041817	MsaG001990	0.830629	4.748485e-55	1.399083e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001990	MtrunA17_Chr1g0169761	90.244	164	16	0	1	164	1	164	2.36e-105	308
MsaG001990	MtrunA17_Chr8g0376821	82.317	164	29	0	1	164	1	164	2.14e-94	280
MsaG001990	MtrunA17_Chr4g0074101	71.823	181	34	1	1	164	1	181	1.52e-84	255
MsaG001990	MtrunA17_Chr1g0180591	76.829	164	38	0	1	164	1	164	3.41e-83	251
MsaG001990	MtrunA17_Chr1g0175601	77.778	162	36	0	1	162	1	162	3.53e-83	251
MsaG001990	MtrunA17_Chr1g0175611	73.780	164	43	0	1	164	1	164	1.32e-78	239
MsaG001990	MtrunA17_Chr8g0357771	54.878	164	74	0	1	164	1	164	3.97e-58	187
MsaG001990	MtrunA17_Chr8g0356071	54.878	164	68	2	1	164	1	158	7.12e-52	170
MsaG001990	MtrunA17_Chr4g0052061	39.053	169	89	5	1	168	1	156	1.62e-27	106
MsaG001990	MtrunA17_Chr3g0119901	41.322	121	69	1	1	119	8	128	4.69e-23	95.9
MsaG001990	MtrunA17_Chr3g0099411	41.549	142	72	5	2	136	9	146	3.38e-22	94.0
MsaG001990	MtrunA17_Chr1g0206991	35.294	187	103	5	2	183	9	182	1.28e-21	91.3
MsaG001990	MtrunA17_Chr3g0085241	40.496	121	70	1	1	119	40	160	1.55e-21	92.8
MsaG001990	MtrunA17_Chr4g0052081	41.958	143	78	4	1	140	1	141	2.02e-21	90.5
MsaG001990	MtrunA17_Chr1g0188671	40.152	132	68	3	2	131	47	169	6.46e-21	91.7
MsaG001990	MtrunA17_Chr2g0333981	45.455	99	52	1	1	99	11	107	1.29e-20	88.2
MsaG001990	MtrunA17_Chr1g0206701	44.144	111	59	2	2	110	9	118	4.98e-20	88.2
MsaG001990	MtrunA17_Chr1g0206721	44.144	111	59	2	2	110	9	118	6.25e-20	87.8
MsaG001990	MtrunA17_Chr1g0187361	34.000	200	91	7	2	176	9	192	6.90e-20	87.8
MsaG001990	MtrunA17_Chr3g0099421	43.243	111	60	2	2	110	34	143	8.28e-20	88.2
MsaG001990	MtrunA17_Chr1g0149391	42.342	111	61	2	2	110	9	118	2.21e-19	86.3
MsaG001990	MtrunA17_Chr2g0292791	57.971	69	29	0	2	70	9	77	5.01e-19	85.5
MsaG001990	MtrunA17_Chr5g0419601	54.286	70	32	0	1	70	8	77	5.31e-19	85.5
MsaG001990	MtrunA17_Chr4g0018951	37.405	131	70	2	16	140	26	150	6.77e-19	83.2
MsaG001990	MtrunA17_Chr8g0355091	56.522	69	30	0	2	70	9	77	7.20e-19	85.1
MsaG001990	MtrunA17_Chr8g0379021	41.880	117	54	2	2	104	12	128	1.51e-18	82.4
MsaG001990	MtrunA17_Chr3g0089141	55.072	69	31	0	2	70	9	77	4.10e-18	82.8
MsaG001990	MtrunA17_Chr1g0208561	55.072	69	31	0	2	70	9	77	4.18e-18	82.8
MsaG001990	MtrunA17_Chr5g0422421	50.649	77	38	0	2	78	9	85	7.57e-18	82.0
MsaG001990	MtrunA17_Chr1g0206691	40.000	125	61	4	18	142	8	118	3.16e-17	80.1
MsaG001990	MtrunA17_Chr3g0089151	40.541	111	62	2	2	109	9	118	3.52e-17	77.4
MsaG001990	MtrunA17_Chr1g0208581	41.071	112	61	3	2	110	9	118	4.86e-17	79.7
MsaG001990	MtrunA17_Chr2g0300441	41.525	118	64	3	2	117	9	123	7.27e-17	79.3
MsaG001990	MtrunA17_Chr2g0317451	50.725	69	34	0	2	70	9	77	1.25e-16	78.6
MsaG001990	MtrunA17_Chr2g0317481	50.725	69	34	0	2	70	9	77	1.29e-16	78.6
MsaG001990	MtrunA17_Chr5g0422941	46.753	77	41	0	2	78	9	85	1.30e-16	78.6
MsaG001990	MtrunA17_Chr2g0325971	53.623	69	32	0	2	70	9	77	1.83e-16	77.8
MsaG001990	MtrunA17_Chr5g0404951	51.613	62	30	0	1	62	1	62	2.45e-16	77.8
MsaG001990	MtrunA17_Chr4g0020221	49.367	79	39	1	1	79	1	78	2.82e-16	78.2
MsaG001990	MtrunA17_Chr2g0300421	42.308	104	52	2	2	100	9	109	3.57e-16	75.9
MsaG001990	MtrunA17_Chr5g0427401	42.202	109	57	2	1	105	1	107	4.80e-16	76.6
MsaG001990	MtrunA17_Chr8g0380021	40.385	104	59	1	1	104	17	117	6.64e-16	76.6
MsaG001990	MtrunA17_Chr1g0187351	57.895	57	24	0	18	74	8	64	7.07e-16	72.0
MsaG001990	MtrunA17_Chr2g0284911	37.615	109	64	1	1	105	16	124	1.03e-15	76.3
MsaG001990	MtrunA17_Chr1g0173161	57.895	57	24	0	1	57	1	57	1.15e-15	71.6
MsaG001990	MtrunA17_Chr3g0097101	38.679	106	62	1	1	106	16	118	1.15e-15	75.9
MsaG001990	MtrunA17_Chr7g0246431	38.462	104	61	1	1	104	1	101	1.37e-15	75.1
MsaG001990	MtrunA17_Chr8g0351051	49.275	69	35	0	1	69	1	69	2.53e-15	75.1
MsaG001990	MtrunA17_Chr5g0427921	56.897	58	25	0	1	58	1	58	5.02e-15	69.3
MsaG001990	MtrunA17_Chr3g0077501	47.826	69	36	0	1	69	1	69	5.79e-15	73.6
MsaG001990	MtrunA17_Chr2g0279821	47.059	85	44	1	1	85	1	84	8.82e-15	73.2
MsaG001990	MtrunA17_Chr8g0377561	52.632	57	27	0	1	57	1	57	1.37e-14	69.3
MsaG001990	MtrunA17_Chr4g0071601	50.000	80	40	0	1	80	11	90	1.63e-14	71.2
MsaG001990	MtrunA17_Chr8g0351041	46.377	69	37	0	1	69	1	69	1.84e-14	70.9
MsaG001990	MtrunA17_Chr5g0425191	52.632	57	27	0	1	57	1	57	2.03e-14	68.9
MsaG001990	MtrunA17_Chr1g0204111	46.479	71	38	0	1	71	17	87	2.36e-14	72.4
MsaG001990	MtrunA17_Chr4g0057151	46.377	69	37	0	1	69	1	69	3.51e-14	70.9
MsaG001990	MtrunA17_Chr2g0308251	50.877	57	28	0	1	57	1	57	4.81e-14	67.4
MsaG001990	MtrunA17_Chr3g0122251	41.837	98	52	1	1	98	1	93	5.51e-14	71.2
MsaG001990	MtrunA17_Chr7g0246381	46.269	67	31	1	1	62	1	67	6.02e-14	66.6
MsaG001990	MtrunA17_Chr7g0238991	41.667	108	46	3	18	117	37	135	7.19e-14	70.9
MsaG001990	MtrunA17_Chr3g0111841	60.417	48	19	0	18	65	12	59	7.99e-14	66.2
MsaG001990	MtrunA17_Chr4g0044071	50.877	57	28	0	1	57	1	57	1.16e-13	67.0
MsaG001990	MtrunA17_Chr8g0351031	46.377	69	37	0	1	69	1	69	1.47e-13	69.7
MsaG001990	MtrunA17_Chr4g0049541	49.275	69	35	0	1	69	1	69	1.73e-13	69.3
MsaG001990	MtrunA17_Chr5g0417661	51.852	54	26	0	1	54	56	109	2.40e-13	66.6
MsaG001990	MtrunA17_Chr7g0220111	52.632	57	27	0	1	57	1	57	3.39e-13	68.9
MsaG001990	MtrunA17_Chr5g0420091	52.632	57	27	0	1	57	1	57	3.44e-13	68.2
MsaG001990	MtrunA17_Chr1g0164791	46.479	71	36	1	1	69	1	71	4.56e-13	68.2
MsaG001990	MtrunA17_Chr5g0412461	37.755	98	48	2	1	97	1	86	4.70e-13	68.2
MsaG001990	MtrunA17_Chr4g0049901	45.588	68	37	0	1	68	27	94	4.89e-13	68.2
MsaG001990	MtrunA17_Chr4g0061671	50.000	58	29	0	1	58	1	58	5.98e-13	67.0
MsaG001990	MtrunA17_Chr5g0412271	37.755	98	48	2	1	97	1	86	6.17e-13	67.8
MsaG001990	MtrunA17_Chr3g0134451	45.070	71	38	1	1	70	1	71	6.55e-13	68.9
MsaG001990	MtrunA17_Chr5g0411691	49.275	69	35	0	1	69	1	69	8.02e-13	67.8
MsaG001990	MtrunA17_Chr6g0455511	52.632	57	27	0	1	57	1	57	8.44e-13	67.8
MsaG001990	MtrunA17_Chr6g0474371	34.532	139	81	4	1	134	1	134	1.11e-12	66.2
MsaG001990	MtrunA17_Chr5g0420081	48.276	58	30	0	1	58	1	58	2.53e-12	66.2
MsaG001990	MtrunA17_Chr4g0061691	41.429	70	40	1	1	69	1	70	3.93e-12	65.5
MsaG001990	MtrunA17_Chr8g0366231	38.889	90	47	2	1	82	1	90	4.02e-12	65.5
MsaG001990	MtrunA17_Chr1g0166611	68.182	44	14	0	15	58	19	62	4.72e-12	63.2
MsaG001990	MtrunA17_Chr3g0111831	49.123	57	29	0	18	74	20	76	6.38e-12	61.2
MsaG001990	MtrunA17_Chr3g0142191	48.387	62	32	0	1	62	1	62	6.66e-12	64.7
MsaG001990	MtrunA17_Chr4g0018421	45.833	72	38	1	1	71	1	72	8.38e-12	63.9
MsaG001990	MtrunA17_Chr1g0159661	38.462	65	40	0	1	65	1	65	1.09e-11	63.2
MsaG001990	MtrunA17_Chr7g0220121	35.227	88	51	2	1	82	1	88	2.11e-11	63.9
MsaG001990	MtrunA17_Chr3g0125241	40.000	65	39	0	1	65	26	90	2.17e-11	62.8
MsaG001990	MtrunA17_Chr3g0111931	50.909	55	27	0	18	72	6	60	2.84e-11	60.1
MsaG001990	MtrunA17_Chr4g0060841	50.000	54	27	0	1	54	1	54	5.64e-11	63.5
MsaG001990	MtrunA17_Chr8g0345001	32.692	104	70	0	3	106	19	122	8.65e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG001990	AT2G34440.1	43.860	171	86	5	1	161	1	171	1.04e-32	121
MsaG001990	AT3G66656.1	49.593	123	54	2	1	118	1	120	5.92e-29	111
MsaG001990	AT2G24840.1	35.625	160	82	3	1	143	62	217	5.34e-25	103
MsaG001990	AT5G60440.1	39.310	145	69	2	2	142	7	136	6.54e-22	95.1
MsaG001990	AT1G01530.1	38.849	139	81	2	1	139	6	140	8.04e-20	88.2
MsaG001990	AT5G13790.2	44.554	101	44	2	1	100	1	90	4.41e-17	80.9
MsaG001990	AT3G61120.1	52.174	69	33	0	1	69	1	69	6.86e-17	80.1
MsaG001990	AT2G45660.2	37.963	108	64	1	1	108	1	105	8.89e-17	77.4
MsaG001990	AT4G09960.2	32.237	152	95	2	1	152	1	144	1.20e-16	78.6
MsaG001990	AT3G57230.2	45.652	92	42	2	1	91	1	85	1.33e-16	76.6
MsaG001990	AT1G65360.1	35.398	113	73	0	1	113	6	118	1.50e-16	78.6
MsaG001990	AT4G36590.1	31.214	173	83	5	2	160	7	157	2.17e-16	78.6
MsaG001990	AT2G45660.1	37.963	108	64	1	1	108	1	105	2.57e-16	77.8
MsaG001990	AT1G47760.1	36.641	131	69	3	1	129	1	119	3.10e-16	76.6
MsaG001990	AT4G09960.1	30.337	178	107	4	1	173	1	166	4.00e-16	77.4
MsaG001990	AT4G09960.6	30.337	178	107	4	1	173	2	167	4.40e-16	77.4
MsaG001990	AT4G09960.5	30.337	178	107	4	1	173	11	176	5.16e-16	77.4
MsaG001990	AT5G13790.1	50.725	69	34	0	1	69	1	69	6.49e-16	77.4
MsaG001990	AT4G09960.3	30.337	178	107	4	1	173	27	192	8.49e-16	77.0
MsaG001990	AT2G22630.1	36.691	139	59	4	1	139	1	110	9.82e-16	76.3
MsaG001990	AT2G22630.2	36.691	139	59	4	1	139	1	110	9.82e-16	76.3
MsaG001990	AT2G45650.1	49.275	69	35	0	1	69	1	69	9.98e-16	76.6
MsaG001990	AT3G57230.1	45.652	92	42	2	1	91	1	85	1.13e-15	76.3
MsaG001990	AT3G57230.4	45.652	92	42	2	1	91	1	85	1.13e-15	76.3
MsaG001990	AT3G58780.5	39.623	106	61	1	1	106	22	124	1.45e-15	76.3
MsaG001990	AT3G58780.1	39.623	106	61	1	1	106	16	118	1.76e-15	75.9
MsaG001990	AT3G58780.4	39.623	106	61	1	1	106	16	118	1.80e-15	76.6
MsaG001990	AT4G22950.2	47.826	69	36	0	1	69	1	69	2.01e-15	73.9
MsaG001990	AT4G09960.4	34.862	109	71	0	1	109	96	204	2.13e-15	77.0
MsaG001990	AT3G57390.3	50.725	69	34	0	1	69	1	69	2.63e-15	75.1
MsaG001990	AT5G62165.6	36.111	108	58	2	1	104	1	101	2.70e-15	73.2
MsaG001990	AT5G62165.9	36.111	108	58	2	1	104	1	101	2.70e-15	73.2
MsaG001990	AT5G62165.7	36.111	108	58	2	1	104	1	101	2.70e-15	73.2
MsaG001990	AT5G62165.8	36.111	108	58	2	1	104	1	101	2.70e-15	73.2
MsaG001990	AT5G62165.13	36.111	108	58	2	1	104	1	101	2.70e-15	73.2
MsaG001990	AT2G42830.1	38.679	106	62	1	1	106	16	118	4.24e-15	74.7
MsaG001990	AT2G42830.2	38.679	106	62	1	1	106	16	118	4.50e-15	74.7
MsaG001990	AT3G57390.1	50.725	69	34	0	1	69	1	69	4.72e-15	74.7
MsaG001990	AT5G62165.17	36.111	108	58	2	1	104	1	101	4.83e-15	72.4
MsaG001990	AT5G62165.12	36.111	108	58	2	1	104	1	101	4.83e-15	72.4
MsaG001990	AT5G62165.11	36.111	108	58	2	1	104	1	101	4.83e-15	72.4
MsaG001990	AT3G04100.1	33.557	149	73	4	2	142	14	144	6.65e-15	73.6
MsaG001990	AT5G62165.14	41.667	84	45	1	1	80	1	84	1.02e-14	70.1
MsaG001990	AT4G22950.3	47.826	69	36	0	1	69	1	69	1.05e-14	73.2
MsaG001990	AT4G22950.1	47.826	69	36	0	1	69	1	69	1.05e-14	73.2
MsaG001990	AT4G18960.1	36.697	109	69	0	2	110	18	126	1.43e-14	73.6
MsaG001990	AT1G72350.1	53.521	71	31	1	2	72	43	111	1.64e-14	72.8
MsaG001990	AT4G37940.3	52.174	69	33	0	1	69	1	69	1.79e-14	71.6
MsaG001990	AT5G62165.10	36.111	108	58	2	1	104	1	101	2.11e-14	71.6
MsaG001990	AT5G62165.4	36.111	108	58	2	1	104	1	101	2.11e-14	71.6
MsaG001990	AT4G11880.2	40.860	93	53	2	1	91	1	93	2.68e-14	70.9
MsaG001990	AT4G11880.3	40.860	93	53	2	1	91	1	93	2.68e-14	70.9
MsaG001990	AT5G62165.3	36.111	108	58	2	1	104	1	101	2.72e-14	71.6
MsaG001990	AT5G62165.1	36.111	108	58	2	1	104	1	101	2.72e-14	71.6
MsaG001990	AT5G62165.2	36.111	108	58	2	1	104	1	101	2.72e-14	71.6
MsaG001990	AT4G37940.4	52.174	69	33	0	1	69	1	69	2.88e-14	71.6
MsaG001990	AT4G37940.1	52.174	69	33	0	1	69	1	69	3.06e-14	72.0
MsaG001990	AT3G58780.2	43.023	86	36	1	1	73	16	101	6.38e-14	71.2
MsaG001990	AT1G77980.1	47.887	71	36	1	1	70	1	71	8.04e-14	72.4
MsaG001990	AT4G24540.1	34.821	112	70	2	1	112	1	109	9.36e-14	70.5
MsaG001990	AT1G22130.1	30.500	200	110	8	1	190	1	181	1.08e-13	72.0
MsaG001990	AT1G24260.3	39.796	98	54	1	1	98	1	93	1.11e-13	70.5
MsaG001990	AT2G22540.3	40.206	97	47	1	1	97	1	86	1.31e-13	70.5
MsaG001990	AT2G22540.1	40.206	97	47	1	1	97	1	86	1.31e-13	70.5
MsaG001990	AT5G10140.2	51.724	58	28	0	1	58	1	58	1.49e-13	68.6
MsaG001990	AT1G24260.2	39.796	98	54	1	1	98	1	93	1.50e-13	70.5
MsaG001990	AT5G51870.2	44.928	69	38	0	1	69	1	69	1.64e-13	68.6
MsaG001990	AT5G65070.4	41.558	77	43	1	1	75	1	77	1.94e-13	67.8
MsaG001990	AT4G11880.4	40.860	93	53	2	1	91	1	93	2.39e-13	69.3
MsaG001990	AT4G11880.1	40.860	93	53	2	1	91	1	93	2.39e-13	69.3
MsaG001990	AT3G54340.1	48.387	62	32	0	1	62	1	62	2.55e-13	69.3
MsaG001990	AT5G51860.1	28.497	193	102	5	1	164	1	186	2.68e-13	68.9
MsaG001990	AT5G10140.4	51.724	58	28	0	1	58	1	58	2.75e-13	68.2
MsaG001990	AT5G10140.3	51.724	58	28	0	1	58	1	58	2.77e-13	68.2
MsaG001990	AT5G51870.1	44.928	69	38	0	1	69	1	69	3.03e-13	68.6
MsaG001990	AT5G10140.1	51.724	58	28	0	1	58	1	58	3.06e-13	68.6
MsaG001990	AT5G51870.5	44.928	69	38	0	1	69	24	92	3.09e-13	68.6
MsaG001990	AT1G71692.1	47.222	72	37	1	1	71	1	72	3.61e-13	68.6
MsaG001990	AT5G51860.2	39.759	83	50	0	1	83	1	83	4.50e-13	68.2
MsaG001990	AT5G51870.3	44.928	69	38	0	1	69	11	79	6.69e-13	68.2
MsaG001990	AT3G02310.1	54.386	57	26	0	1	57	1	57	6.80e-13	68.6
MsaG001990	AT5G51870.4	44.928	69	38	0	1	69	1	69	6.82e-13	67.8
MsaG001990	AT2G03710.3	52.632	57	27	0	1	57	1	57	7.01e-13	67.0
MsaG001990	AT3G02310.2	54.386	57	26	0	1	57	1	57	7.03e-13	67.4
MsaG001990	AT5G15800.1	52.632	57	27	0	1	57	1	57	7.35e-13	68.6
MsaG001990	AT5G15800.2	52.632	57	27	0	1	57	1	57	9.00e-13	68.2
MsaG001990	AT3G58780.3	52.542	59	28	0	1	59	16	74	9.20e-13	68.6
MsaG001990	AT2G03710.2	52.632	57	27	0	1	57	1	57	9.22e-13	68.2
MsaG001990	AT2G03710.1	52.632	57	27	0	1	57	1	57	9.43e-13	68.2
MsaG001990	AT1G24260.1	52.632	57	27	0	1	57	1	57	1.27e-12	67.8
MsaG001990	AT5G65070.1	41.558	77	43	1	1	75	1	77	1.35e-12	66.6
MsaG001990	AT2G14210.2	48.571	70	35	1	1	69	1	70	1.35e-12	67.4
MsaG001990	AT2G14210.1	48.571	70	35	1	1	69	1	70	1.39e-12	67.4
MsaG001990	AT3G30260.1	39.623	106	58	3	1	104	1	102	1.54e-12	67.4
MsaG001990	AT2G22540.2	40.206	97	42	2	1	97	1	81	1.62e-12	67.0
MsaG001990	AT5G65070.5	41.558	77	43	1	1	75	1	77	1.63e-12	66.6
MsaG001990	AT5G20240.2	45.455	66	36	0	1	66	1	66	1.76e-12	65.1
MsaG001990	AT5G65070.2	41.558	77	43	1	1	75	1	77	2.22e-12	66.6
MsaG001990	AT1G77950.3	43.662	71	39	1	1	70	1	71	4.07e-12	66.2
MsaG001990	AT1G77950.2	43.662	71	39	1	1	70	1	71	4.07e-12	66.2
MsaG001990	AT1G77950.1	43.662	71	39	1	1	70	1	71	4.07e-12	66.2
MsaG001990	AT1G77950.4	43.662	71	39	1	1	70	1	71	4.07e-12	66.2
MsaG001990	AT5G65070.3	46.154	65	33	1	1	63	1	65	4.32e-12	65.9
MsaG001990	AT5G60910.1	48.276	58	30	0	1	58	1	58	5.80e-12	65.5
MsaG001990	AT1G29962.1	44.444	72	40	0	2	73	8	79	6.01e-12	64.3
MsaG001990	AT5G20240.1	45.455	66	36	0	1	66	1	66	8.22e-12	64.7
MsaG001990	AT5G65060.2	32.051	156	94	5	1	152	1	148	8.41e-12	63.9
MsaG001990	AT2G26320.1	43.860	57	32	0	1	57	17	73	9.61e-12	62.0
MsaG001990	AT1G46408.1	48.611	72	33	2	3	70	5	76	1.11e-11	65.1
MsaG001990	AT1G26310.1	39.130	92	50	2	1	86	1	92	1.17e-11	65.1
MsaG001990	AT1G69120.2	50.000	58	29	0	1	58	1	58	1.28e-11	64.3
MsaG001990	AT5G65050.2	49.091	55	28	0	1	55	1	55	1.38e-11	63.2
MsaG001990	AT1G69120.1	50.000	58	29	0	1	58	1	58	1.54e-11	64.7
MsaG001990	AT5G65060.3	50.909	55	27	0	1	55	1	55	1.60e-11	63.5
MsaG001990	AT1G17310.1	55.357	56	23	1	17	72	63	116	1.87e-11	63.5
MsaG001990	AT1G28460.1	30.625	160	94	4	2	146	8	165	1.87e-11	62.8
MsaG001990	AT1G18750.4	42.466	73	40	1	1	71	1	73	1.89e-11	65.5
MsaG001990	AT1G18750.3	42.466	73	40	1	1	71	1	73	1.95e-11	65.5
MsaG001990	AT5G65060.1	50.909	55	27	0	1	55	1	55	1.99e-11	63.2
MsaG001990	AT1G18750.1	42.466	73	40	1	1	71	1	73	2.02e-11	65.5
MsaG001990	AT1G17310.2	55.357	56	23	1	17	72	74	127	2.31e-11	63.5
MsaG001990	AT5G65050.3	49.091	55	28	0	1	55	1	55	3.00e-11	62.8
MsaG001990	AT5G65050.5	49.091	55	28	0	1	55	1	55	3.04e-11	62.4
MsaG001990	AT5G65050.1	49.091	55	28	0	1	55	1	55	3.14e-11	62.4
MsaG001990	AT1G69540.2	47.222	72	37	1	1	71	1	72	3.37e-11	64.7
MsaG001990	AT5G23260.3	61.224	49	19	0	1	49	1	49	3.88e-11	63.2
MsaG001990	AT5G23260.2	61.224	49	19	0	1	49	1	49	3.94e-11	63.2
MsaG001990	AT1G69540.1	47.222	72	37	1	1	71	1	72	4.22e-11	64.3
MsaG001990	AT5G23260.1	61.224	49	19	0	1	49	17	65	5.30e-11	63.2
MsaG001990	AT5G23260.4	61.224	49	19	0	1	49	17	65	5.42e-11	63.2

Find 103 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTTGCGGTCTTGTTGTTTC+TGG	0.187395	1:+29827658	MsaT001990.1:CDS
GGAGTTGATGGTGGCTGTTT+TGG	0.246678	1:+29828258	MsaT001990.1:CDS
GGTGAGTAGAAATAGGTTTC+AGG	0.270355	1:+29828290	MsaT001990.1:CDS
GGGTGTTTATGTGGTGGTGA+TGG	0.285199	1:+29827733	MsaT001990.1:CDS
GGTGTTTATGTGGTGGTGAT+GGG	0.306616	1:+29827734	MsaT001990.1:CDS
GTGGTGGTGGAAGGAGTTGA+TGG	0.311326	1:+29828246	MsaT001990.1:CDS
GACTTCTGCTCTGCACAAAA+TGG	0.316359	1:-29825782	None:intergenic
TGTTTCTGGTATGGTGGTTA+TGG	0.323709	1:+29827672	MsaT001990.1:CDS
GGTGACAAACCTTACTCTTT+TGG	0.325860	1:+29825826	MsaT001990.1:CDS
GGCCTGTCCTTTCCCTCTTT+CGG	0.330422	1:+29827610	MsaT001990.1:CDS
GATCAGTGGTGAGTAGAAAT+AGG	0.338834	1:+29828283	MsaT001990.1:CDS
GGTGATAACATGTGGTGTTT+TGG	0.341721	1:+29827712	MsaT001990.1:CDS
CGCTTGCATCAGTCTCTTGT+TGG	0.342002	1:-29825885	None:intergenic
ACGGTGTCGTGGTGGAATTT+TGG	0.356042	1:+29827939	MsaT001990.1:CDS
GGTGGTGTTGTGGTGGGAGG+AGG	0.363597	1:+29828207	MsaT001990.1:CDS
AACAAAACCACCAAGAGATT+TGG	0.381984	1:-29827976	None:intergenic
GTTGTGGTGGGAGGAGGTGA+TGG	0.386309	1:+29828213	MsaT001990.1:CDS
CATTAGAAGATGGGTTTCCT+TGG	0.387460	1:-29825912	None:intergenic
ATGTGGTGGTGATGGGGTGG+TGG	0.389406	1:+29827741	MsaT001990.1:CDS
TAATGGTGGTGGTGTTGTGG+TGG	0.407650	1:+29828200	MsaT001990.1:CDS
ACATTCTCAAAGCGTCGAAC+GGG	0.411690	1:+29825733	MsaT001990.1:CDS
CATACAAAGAGCTTCAAGAT+TGG	0.419220	1:+29826079	MsaT001990.1:CDS
GCTGCCTATGTAGCTGCGGC+GGG	0.434789	1:+29827852	MsaT001990.1:CDS
AGTCTCTTGTTGGAGATACT+TGG	0.434895	1:-29825875	None:intergenic
ATACAAAGAGCTTCAAGATT+GGG	0.435727	1:+29826080	MsaT001990.1:CDS
GGTTAGGTAGTGGGAGGTAA+TGG	0.436814	1:+29828183	MsaT001990.1:intron
CGGTCTTGTTGTTTCTGGTA+TGG	0.437320	1:+29827663	MsaT001990.1:CDS
ATATATGATGCTTCTTGCTC+AGG	0.443837	1:+29826137	MsaT001990.1:CDS
GAATCACCGCCGCAGAGAAC+AGG	0.444143	1:-29827429	None:intergenic
AGGTAATGGTGGTGGTGTTG+TGG	0.446122	1:+29828197	MsaT001990.1:CDS
AATGGTGGTGGTGTTGTGGT+GGG	0.452061	1:+29828201	MsaT001990.1:CDS
CGTCGGAAGACCAGGTTTCA+AGG	0.456193	1:+29827451	MsaT001990.1:CDS
ATTAGAAGATGGGTTTCCTT+GGG	0.457016	1:-29825911	None:intergenic
TTTGAATCGGAATCCCCTCT+TGG	0.460000	1:+29828044	MsaT001990.1:CDS
ATCTTGGGAGCATTAGAAGA+TGG	0.462018	1:-29825922	None:intergenic
GGATCTAGCGCCAAATCTCT+TGG	0.471353	1:+29827966	MsaT001990.1:CDS
GTTATTGTTGTGTTCTCTCC+CGG	0.473295	1:+29825805	MsaT001990.1:CDS
GTGTTTATGTGGTGGTGATG+GGG	0.476228	1:+29827735	MsaT001990.1:CDS
CGGTGATTCGTCGGAAGACC+AGG	0.480407	1:+29827443	MsaT001990.1:CDS
TTTATGTGGTGGTGATGGGG+TGG	0.481835	1:+29827738	MsaT001990.1:CDS
GGTTAGCGGTGGTGCGACGA+TGG	0.485715	1:+29827373	MsaT001990.1:intron
GTGGTGGGAGGAGGTGATGG+TGG	0.486662	1:+29828216	MsaT001990.1:CDS
ACGAGAAACAATGCCGAAAG+AGG	0.489163	1:-29827623	None:intergenic
GGCTGCCTATGTAGCTGCGG+CGG	0.490481	1:+29827851	MsaT001990.1:CDS
GGTGGTGGTGTTGTGGTGGG+AGG	0.491323	1:+29828204	MsaT001990.1:CDS
AATGTAACTTGCCTCGTGTT+GGG	0.491629	1:-29825715	None:intergenic
CAGAATCTCATCATGAGTCT+TGG	0.496689	1:-29826007	None:intergenic
TACATTCTCAAAGCGTCGAA+CGG	0.497566	1:+29825732	MsaT001990.1:CDS
CGTCGAATTCAGACTGGTTG+CGG	0.500224	1:+29827643	MsaT001990.1:CDS
AGGGTGGATGATCTTTGAAT+CGG	0.501944	1:+29828031	MsaT001990.1:CDS
TTGTCGTGGATGCAGTGGTG+TGG	0.502036	1:+29827911	MsaT001990.1:CDS
CCTGGATGGCCAAAAGAGTA+AGG	0.504633	1:-29825835	None:intergenic
TAGGTAGTGGGAGGTAATGG+TGG	0.510520	1:+29828186	MsaT001990.1:intron
ACAAGACACACCTTGAAACC+TGG	0.512730	1:-29827461	None:intergenic
ATCTTCTAATGCTCCCAAGA+TGG	0.515526	1:+29825924	MsaT001990.1:CDS
TCTTGGGAGCATTAGAAGAT+GGG	0.519973	1:-29825921	None:intergenic
GCTGCAACAACGTCAACACC+TGG	0.524107	1:-29825853	None:intergenic
AACAATGCCGAAAGAGGGAA+AGG	0.525861	1:-29827617	None:intergenic
ATGCAGTGGTGTGGGTTGGA+CGG	0.527496	1:+29827920	MsaT001990.1:CDS
GTGTGGGTTGGACGGTGTCG+TGG	0.527860	1:+29827928	MsaT001990.1:CDS
TGTCGTGGATGCAGTGGTGT+GGG	0.530040	1:+29827912	MsaT001990.1:CDS
ATGGTACGGTGGTGGTGAGA+AGG	0.534390	1:+29827691	MsaT001990.1:CDS
GTGGATGCAGTGGTGTGGGT+TGG	0.536850	1:+29827916	MsaT001990.1:CDS
GTTAGCGGTGGTGCGACGAT+GGG	0.537130	1:+29827374	MsaT001990.1:intron
GGGAAAGGACAGGCCGTCAG+AGG	0.542983	1:-29827602	None:intergenic
AATTCGTGATGGTGAAAAGC+AGG	0.545592	1:+29825984	MsaT001990.1:CDS
TCTCTGCGGCGGTGATTCGT+CGG	0.545847	1:+29827434	MsaT001990.1:CDS
ACAACCCGCCGCAGCTACAT+AGG	0.551330	1:-29827856	None:intergenic
TGTGTTTGGATGTTAGAGGG+TGG	0.552560	1:+29828015	MsaT001990.1:CDS
CAAACAGAGAACAACCAAGA+GGG	0.557717	1:-29828058	None:intergenic
CGAGAAACAATGCCGAAAGA+GGG	0.558465	1:-29827622	None:intergenic
GCTTCTTGCTCAGGAACCAA+TGG	0.559511	1:+29826146	MsaT001990.1:CDS
GTGGTGGAAGGAGTTGATGG+TGG	0.562216	1:+29828249	MsaT001990.1:CDS
GTAGTGGGAGGTAATGGTGG+TGG	0.564265	1:+29828189	MsaT001990.1:intron
TGGGTTGGACGGTGTCGTGG+TGG	0.564871	1:+29827931	MsaT001990.1:CDS
GTTTCTCGTCGAATTCAGAC+TGG	0.565060	1:+29827637	MsaT001990.1:CDS
CTGGTATGGTGGTTATGGTA+CGG	0.566308	1:+29827677	MsaT001990.1:CDS
CCGCAGAGAACAGGTGCAAG+AGG	0.566736	1:-29827420	None:intergenic
TCTAGCGCCAAATCTCTTGG+TGG	0.567520	1:+29827969	MsaT001990.1:CDS
CTTGCACCTGTTCTCTGCGG+CGG	0.573357	1:+29827423	MsaT001990.1:CDS
TGGTGGTTATGGTACGGTGG+TGG	0.573462	1:+29827683	MsaT001990.1:CDS
AAAAGAGTAAGGTTTGTCAC+CGG	0.574218	1:-29825824	None:intergenic
GAATGTAACTTGCCTCGTGT+TGG	0.578413	1:-29825716	None:intergenic
TGCCGAAAGAGGGAAAGGAC+AGG	0.586164	1:-29827612	None:intergenic
GCTGCGGCGGGTTGTAGTGG+TGG	0.599851	1:+29827864	MsaT001990.1:CDS
TCTTGTTGTTTCTGGTATGG+TGG	0.601256	1:+29827666	MsaT001990.1:CDS
CAACAACGTCAACACCTGGA+TGG	0.601890	1:-29825849	None:intergenic
ACAAACAGAGAACAACCAAG+AGG	0.604125	1:-29828059	None:intergenic
GGGGTTTGTCGTGGATGCAG+TGG	0.604753	1:+29827906	MsaT001990.1:CDS
AACAGGTGCAAGAGGCGATG+TGG	0.608456	1:-29827412	None:intergenic
GTAGCTGCGGCGGGTTGTAG+TGG	0.615235	1:+29827861	MsaT001990.1:CDS
AAAGAGTAAGGTTTGTCACC+GGG	0.618026	1:-29825823	None:intergenic
GGTTGTTCTCTGTTTGTCCG+CGG	0.619130	1:+29828065	MsaT001990.1:CDS
GGTGCAAGAGGCGATGTGGA+TGG	0.641707	1:-29827408	None:intergenic
ACTGATGCAAGCGATTCCCA+AGG	0.659023	1:+29825895	MsaT001990.1:CDS
ATAGGTTTCAGGTTGTGTGA+TGG	0.659856	1:+29828301	MsaT001990.1:CDS
AAACAGAGAACAACCAAGAG+GGG	0.681223	1:-29828057	None:intergenic
TGAGGCTGCCTATGTAGCTG+CGG	0.685538	1:+29827848	MsaT001990.1:CDS
TCGTGAAAGATCCCAACACG+AGG	0.703551	1:+29825704	MsaT001990.1:CDS
GTATGGTGGTTATGGTACGG+TGG	0.712909	1:+29827680	MsaT001990.1:CDS
ATACTGACACAAATTCGTGA+TGG	0.718903	1:+29825973	MsaT001990.1:CDS
GGTGAGAAGGTGATAACATG+TGG	0.734335	1:+29827704	MsaT001990.1:CDS
CCTCTTGCACCTGTTCTCTG+CGG	0.742558	1:+29827420	MsaT001990.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	29825676	29828320	29825676	ID=MsaG001990
Chr1	mRNA	29825676	29828320	29825676	ID=MsaT001990.1;Parent=MsaG001990
Chr1	exon	29825676	29826167	29825676	ID=MsaT001990.1.exon1;Parent=MsaT001990.1
Chr1	CDS	29825676	29826167	29825676	ID=cds.MsaT001990.1;Parent=MsaT001990.1
Chr1	exon	29827379	29827472	29827379	ID=MsaT001990.1.exon2;Parent=MsaT001990.1
Chr1	CDS	29827379	29827472	29827379	ID=cds.MsaT001990.1;Parent=MsaT001990.1
Chr1	exon	29827564	29827762	29827564	ID=MsaT001990.1.exon3;Parent=MsaT001990.1
Chr1	CDS	29827564	29827762	29827564	ID=cds.MsaT001990.1;Parent=MsaT001990.1
Chr1	exon	29827848	29828086	29827848	ID=MsaT001990.1.exon4;Parent=MsaT001990.1
Chr1	CDS	29827848	29828086	29827848	ID=cds.MsaT001990.1;Parent=MsaT001990.1
Chr1	exon	29828193	29828320	29828193	ID=MsaT001990.1.exon5;Parent=MsaT001990.1
Chr1	CDS	29828193	29828320	29828193	ID=cds.MsaT001990.1;Parent=MsaT001990.1

Gene Sequence

>MsaT001990.1

ATGGGTCGTCGTAAAATTAAGATTGAGATCGTGAAAGATCCCAACACGAGGCAAGTTACATTCTCAAAGCGTCGAACGGGCTTATTCAAGAAAGCATATGAATTGTCCATTTTGTGCAGAGCAGAAGTCGTTATTGTTGTGTTCTCTCCCGGTGACAAACCTTACTCTTTTGGCCATCCAGGTGTTGACGTTGTTGCAGCCAAGTATCTCCAACAAGAGACTGATGCAAGCGATTCCCAAGGAAACCCATCTTCTAATGCTCCCAAGATGGAAAAATTAAATCTAGAACTTGCTGAGATACTGACACAAATTCGTGATGGTGAAAAGCAGGCCAAGACTCATGATGAGATTCTGAAGCAAAATGATGTGTCAAAACTCTCTGAGCTTAAAGAATTAAGAGATTCATACAAAGAGCTTCAAGATTGGGTCAAATTATGTCTTAGTGATAATGAAATATCAGAATATATGATGCTTCTTGCTCAGGAACCAATGCGGTGGTGCGACGATGGGTCAATCTACAACCATCCACATCGCCTCTTGCACCTGTTCTCTGCGGCGGTGATTCGTCGGAAGACCAGGTTTCAAGATTTTGAGTCTCAGTTTTCACTATATCGTCACTTTTGTCCTCTGACGGCCTGTCCTTTCCCTCTTTCGGCATTGTTTCTCGTCGAATTCAGACTGGTTGCGGTCTTGTTGTTTCTGGTATGGTGGTTATGGTACGGTGGTGGTGAGAAGGTGATAACATGTGGTGTTTTGGGTGTTTATGTGGTGGTGATGGGGTGGTGTGAGGCTGCCTATGTAGCTGCGGCGGGTTGTAGTGGTGGTTCACTAGTGTTTTTCATGGGGGTTTGTCGTGGATGCAGTGGTGTGGGTTGGACGGTGTCGTGGTGGAATTTTGGTTTCGGATCTAGCGCCAAATCTCTTGGTGGTTTTGTTGCACTGGGGTTGATTTTGTGTTTGGATGTTAGAGGGTGGATGATCTTTGAATCGGAATCCCCTCTTGGTTGTTCTCTGTTTGTCCGCGTGGGAGGTAATGGTGGTGGTGTTGTGGTGGGAGGAGGTGATGGTGGTGATTTTGTGGTGGTGGAAGGAGTTGATGGTGGCTGTTTTGGTGGATCAGTGGTGAGTAGAAATAGGTTTCAGGTTGTGTGA

Protein sequence

>MsaT001990.1

MGRRKIKIEIVKDPNTRQVTFSKRRTGLFKKAYELSILCRAEVVIVVFSPGDKPYSFGHPGVDVVAAKYLQQETDASDSQGNPSSNAPKMEKLNLELAEILTQIRDGEKQAKTHDEILKQNDVSKLSELKELRDSYKELQDWVKLCLSDNEISEYMMLLAQEPMRWCDDGSIYNHPHRLLHLFSAAVIRRKTRFQDFESQFSLYRHFCPLTACPFPLSALFLVEFRLVAVLLFLVWWLWYGGGEKVITCGVLGVYVVVMGWCEAAYVAAAGCSGGSLVFFMGVCRGCSGVGWTVSWWNFGFGSSAKSLGGFVALGLILCLDVRGWMIFESESPLGCSLFVRVGGNGGGVVVGGGDGGDFVVVEGVDGGCFGGSVVSRNRFQVV*