AlfalfaGEDB | MsaG002071

M. sativa ssp. caerulea / MsaG002071

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034285 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002071	KEH41323.1	88.043	92	11	0	25	116	1	92	6.14e-51	166

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002071	sp\|Q7XC57\|MYBS3_ORYSJ	53.623	69	32	0	37	105	95	163	9.74e-19	82.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002071	tr\|A0A072VIR9\|A0A072VIR9_MEDTR	88.043	92	11	0	25	116	1	92	2.93e-51	166

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TFs/TRs:

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Gene ID	Type	Classification
MsaG002071	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002071	MtrunA17_Chr8g0389241	54.321	81	35	2	37	116	106	185	4.04e-21	85.1
MsaG002071	MtrunA17_Chr5g0440731	56.944	72	28	1	38	106	107	178	6.89e-20	82.0
MsaG002071	MtrunA17_Chr5g0440741	56.944	72	28	1	38	106	102	173	1.77e-19	80.9
MsaG002071	MtrunA17_Chr2g0331031	54.688	64	29	0	37	100	110	173	4.20e-19	80.5
MsaG002071	MtrunA17_Chr6g0488471	48.315	89	36	3	37	116	98	185	8.03e-19	79.3
MsaG002071	MtrunA17_Chr3g0135671	71.739	46	13	0	37	82	92	137	2.03e-18	77.4
MsaG002071	MtrunA17_Chr7g0241761	46.835	79	42	0	37	115	141	219	2.10e-18	78.6
MsaG002071	MtrunA17_Chr3g0104071	40.708	113	53	2	2	100	99	211	5.57e-18	77.4
MsaG002071	MtrunA17_Chr5g0429521	54.688	64	29	0	37	100	133	196	6.91e-18	77.0
MsaG002071	MtrunA17_Chr5g0409841	51.429	70	32	1	38	105	94	163	9.17e-18	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002071	AT5G56840.1	55.128	78	30	2	37	109	92	169	1.13e-20	83.6
MsaG002071	AT5G47390.1	52.941	68	32	0	37	104	97	164	7.69e-19	80.5
MsaG002071	AT5G61620.1	55.072	69	31	0	36	104	108	176	1.34e-18	79.3
MsaG002071	AT5G58900.1	53.521	71	30	1	37	104	142	212	1.91e-18	78.6
MsaG002071	AT5G04760.1	53.125	64	30	0	37	100	100	163	7.72e-18	75.9
MsaG002071	AT3G11280.2	44.444	90	48	1	13	100	102	191	7.72e-18	76.6
MsaG002071	AT3G11280.1	44.444	90	48	1	13	100	102	191	7.72e-18	76.6
MsaG002071	AT2G38090.1	53.125	64	30	0	37	100	142	205	1.72e-17	76.3
MsaG002071	AT5G01200.1	54.688	64	29	0	37	100	147	210	3.13e-17	75.1
MsaG002071	AT1G49010.1	47.143	70	37	0	37	106	135	204	3.31e-17	75.5

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Find 30 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGTCTGAAGGGGAGG+TGG	0.533352	1:+31717557	None:intergenic
AACCCATATATCCTCCCCGA+AGG	0.653717	1:+31717510	None:intergenic
AATGAAAATTCAAAAGGTGC+TGG	0.512395	1:-31715170	MsaT002071.1:CDS
AGCAACCTGAGTAGGAGTCT+TGG	0.550878	1:+31715374	None:intergenic
AGGCTGTTGGAAAAGGCAAA+TGG	0.496236	1:-31715425	MsaT002071.1:CDS
AGTGAAACCATGGACAAGGA+CGG	0.651405	1:-31715475	MsaT002071.1:CDS
ATGGACAAGGACGGAGCACC+AGG	0.487460	1:-31715466	MsaT002071.1:CDS
CAAATGGAAGCGAATATCGA+AGG	0.631038	1:-31715409	MsaT002071.1:CDS
CTGGTGCTTCATCTGTATAG+AGG	0.574360	1:-31715151	None:intergenic
CTTCCTTCGGGGAGGATATA+TGG	0.165012	1:-31717513	MsaT002071.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	31715154	31717588	31715154	ID=MsaG002071
Chr1	mRNA	31715154	31717588	31715154	ID=MsaT002071.1;Parent=MsaG002071
Chr1	exon	31715154	31715198	31715154	ID=MsaT002071.1.exon4;Parent=MsaT002071.1
Chr1	CDS	31715154	31715198	31715154	ID=cds.MsaT002071.1;Parent=MsaT002071.1
Chr1	exon	31715293	31715495	31715293	ID=MsaT002071.1.exon3;Parent=MsaT002071.1
Chr1	CDS	31715293	31715495	31715293	ID=cds.MsaT002071.1;Parent=MsaT002071.1
Chr1	exon	31715783	31715786	31715783	ID=MsaT002071.1.exon2;Parent=MsaT002071.1
Chr1	CDS	31715783	31715786	31715783	ID=cds.MsaT002071.1;Parent=MsaT002071.1
Chr1	exon	31717490	31717588	31717490	ID=MsaT002071.1.exon1;Parent=MsaT002071.1
Chr1	CDS	31717490	31717588	31717490	ID=cds.MsaT002071.1;Parent=MsaT002071.1

Gene Sequence	>MsaT002071.1 GATTTGGTGCCACCTCCCCTTCAGACTGGTTTTTGGATGGGGTGGGATGTCAACTTCCTTCGGGGAGGATATATGGGTTGGTCAGGTCCTTTTGCGTGTTCTCTGAAACCATGGACAAGGACGGAGCACCAGGCTTTCTTGAAAGGTTTAAAGGCTGTTGGAAAAGGCAAATGGAAGCGAATATCGAAGGATTTTGTGGTGACCAAGACTCCTACTCAGGTTGCTAGTCATGCACAAAAGCATTTTAATTACAGACGTGGTACATATAATAACAAAAATCGTACAAGCGTCTTTGACATGAAACTTGAAGAAAATGAAAATTCAAAAGGTGCTGGTGCTTCATCTGTATAG
Protein sequence	>MsaT002071.1 DLVPPPLQTGFWMGWDVNFLRGGYMGWSGPFACSLKPWTRTEHQAFLKGLKAVGKGKWKRISKDFVVTKTPTQVASHAQKHFNYRRGTYNNKNRTSVFDMKLEENENSKGAGASSV*