AlfalfaGEDB | MsaG002079

M. sativa ssp. caerulea / MsaG002079

KEGG: K18486
GO: GO:0000302 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010104 GO:0010106 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0019219 GO:0019222 GO:0019725 GO:0023051 GO:0030003 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0046685 GO:0046686 GO:0046916 GO:0048518 GO:0048522 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051252 GO:0051254 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070297 GO:0071496 GO:0071731 GO:0080090 GO:0090575 GO:0097159 GO:0097366 GO:0098771 GO:0140110 GO:1900376 GO:1900378 GO:1900704 GO:1900706 GO:1901363 GO:1901698 GO:1901700 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990641 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002079	XP_013467288.2	59.701	201	29	2	1	149	8	208	3.50e-74	232

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002079	tr\|I3SZM2\|I3SZM2_MEDTR	59.701	201	29	2	1	149	8	208	1.67e-74	232

TFs/TRs:

Gene ID	Type	Classification
MsaG002079	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002079	MtrunA17_Chr1g0170581	59.406	202	29	2	1	149	8	209	4.81e-78	232
MsaG002079	MtrunA17_Chr1g0170591	58.209	201	23	3	1	148	8	200	7.14e-69	208
MsaG002079	MtrunA17_Chr1g0170571	55.941	202	28	3	1	149	8	201	8.51e-61	187
MsaG002079	MtrunA17_Chr7g0256671	42.484	153	36	3	49	149	58	210	7.45e-16	72.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 28 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGATGCTGGTTATGGGTTAT+TGG	0.201953	1:+31889757	None:intergenic
TATACCATTTGATCAGAAAT+AGG	0.266734	1:+31889541	None:intergenic
GTTTCTTCATCTCAAACCTT+TGG	0.309294	1:-31889007	MsaT002079.1:CDS
ATGGATTCTGATGCTGGTTA+TGG	0.337267	1:+31889749	None:intergenic
CATAGCAAAATCTCAGATAA+TGG	0.357726	1:+31889061	None:intergenic
TCCTCAATGTTGTCAACAAC+TGG	0.370216	1:-31889796	None:intergenic
TCAATAGTGTCTTTGTAGAA+TGG	0.399191	1:+31889730	None:intergenic
TCTTCCTATTTCTGATCAAA+TGG	0.399329	1:-31889545	MsaT002079.1:intron
ATGGGTTATTGGCTCTTCAA+AGG	0.419323	1:+31889768	None:intergenic
TCTTCATCTCAAACCTTTGG+AGG	0.445520	1:-31889004	MsaT002079.1:CDS
TGGATTCTGATGCTGGTTAT+GGG	0.454435	1:+31889750	None:intergenic
TGTAGAATGGATTCTGATGC+TGG	0.456368	1:+31889743	None:intergenic
AAGAAACATTTAGCAACATA+AGG	0.460296	1:+31889023	None:intergenic
TTGCTATGTTTAGAAAATGA+TGG	0.461428	1:-31889046	MsaT002079.1:CDS
TCATCTCAAACCTTTGGAGG+AGG	0.481000	1:-31889001	MsaT002079.1:CDS
TGGGTTATTGGCTCTTCAAA+GGG	0.490732	1:+31889769	None:intergenic
CATGCCAAGGTCACTGCTTG+TGG	0.510155	1:+31889646	None:intergenic
AAGAAACATAATTACAACTC+TGG	0.515926	1:-31889160	MsaT002079.1:CDS
CATCTCAAACCTTTGGAGGA+GGG	0.518082	1:-31889000	MsaT002079.1:CDS
ACAAATTATTCATCTTCTTG+CGG	0.523820	1:+31889587	None:intergenic
TGTAGAAGACCCTCCTCCAA+AGG	0.565677	1:+31888991	None:intergenic
CAATCCACAAGCAGTGACCT+TGG	0.569748	1:-31889650	MsaT002079.1:CDS
CACAAGCAGTGACCTTGGCA+TGG	0.603384	1:-31889645	MsaT002079.1:CDS
TCTCAGATAATGGAATCTTG+TGG	0.603687	1:+31889071	None:intergenic
CAGAAATAGGAAGAAGTGAA+CGG	0.605298	1:+31889554	None:intergenic
AACAAGCTTCGACCATGCCA+AGG	0.615549	1:+31889633	None:intergenic
GTCACTGCTTGTGGATTGTG+AGG	0.621854	1:+31889655	None:intergenic
CAATGTTGTCAACAACTGGA+TGG	0.624050	1:-31889792	MsaT002079.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	31888973	31889812	31888973	ID=MsaG002079
Chr1	mRNA	31888973	31889812	31888973	ID=MsaT002079.1;Parent=MsaG002079
Chr1	exon	31888973	31889182	31888973	ID=MsaT002079.1.exon2;Parent=MsaT002079.1
Chr1	CDS	31888973	31889182	31888973	ID=cds.MsaT002079.1;Parent=MsaT002079.1
Chr1	exon	31889546	31889812	31889546	ID=MsaT002079.1.exon1;Parent=MsaT002079.1
Chr1	CDS	31889546	31889812	31889546	ID=cds.MsaT002079.1;Parent=MsaT002079.1

Gene Sequence

>MsaT002079.1

ATGTTGTCAACAACTGGATGGCCCTTTGAAGAGCCAATAACCCATAACCAGCATCAGAATCCATTCTACAAAGACACTATTGATCAATTATTTCATTTTGATGATCAAGTAGAGGCAGAAATTAATTCAACAGATCCTCACAATCCACAAGCAGTGACCTTGGCATGGTCGAAGCTTGTTCATAATGCTAGTGAACGTGATCGCCGCAAGAAGATGAATAATTTGTATTCTTCACTCCGTTCACTTCTTCCTATTTCTGATCAAATGAAGAAACATAATTACAACTCTGGTTTTATCGTTTCAACAAGTAGGCTAAATGATAGTGAAGTTGCAATTCAGATTTCATGTTACACTGTCCACAAGATTCCATTATCTGAGATTTTGCTATGTTTAGAAAATGATGGCCTTATGTTGCTAAATGTTTCTTCATCTCAAACCTTTGGAGGAGGGTCTTCTACAATTTGCATTTTCAGGTGT

Protein sequence

>MsaT002079.1

MLSTTGWPFEEPITHNQHQNPFYKDTIDQLFHFDDQVEAEINSTDPHNPQAVTLAWSKLVHNASERDRRKKMNNLYSSLRSLLPISDQMKKHNYNSGFIVSTSRLNDSEVAIQISCYTVHKIPLSEILLCLENDGLMLLNVSSSQTFGGGSSTICIFRC