AlfalfaGEDB | MsaG002087

M. sativa ssp. caerulea / MsaG002087

KEGG: K11420
GO: -
PFAM: PF02182.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002087	KEH41340.1	89.964	558	32	1	1	558	1	534	0.0	997

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002087	sp\|O82175\|SUVH5_ARATH	40.449	534	262	15	34	557	307	794	1.37e-111	353

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002087	tr\|A0A072VTA4\|A0A072VTA4_MEDTR	89.964	558	32	1	1	558	1	534	0.0	997

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TFs/TRs:

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Gene ID	Type	Classification
MsaG002087	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002087	MtrunA17_Chr1g0170651	89.964	558	32	1	1	558	14	547	0.0	996
MsaG002087	MtrunA17_Chr5g0399801	39.609	563	258	11	28	557	576	1089	1.86e-113	362
MsaG002087	MtrunA17_Chr4g0003501	38.779	557	261	11	32	557	448	955	6.47e-109	347
MsaG002087	MtrunA17_Chr4g0003511	38.819	559	260	11	32	557	543	1052	1.09e-107	346
MsaG002087	MtrunA17_Chr7g0255181	32.117	548	297	16	34	554	203	702	1.77e-72	245
MsaG002087	MtrunA17_Chr8g0354821	31.150	565	299	10	34	554	167	685	6.34e-72	243
MsaG002087	MtrunA17_Chr3g0080761	33.205	518	255	15	85	556	191	663	1.48e-71	241
MsaG002087	MtrunA17_Chr6g0476121	31.760	551	286	15	56	557	134	643	9.28e-71	239
MsaG002087	MtrunA17_Chr6g0476111	31.579	551	287	15	56	557	185	694	4.85e-70	238
MsaG002087	MtrunA17_Chr7g0252211	31.444	547	276	15	65	557	256	757	7.18e-69	236

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002087	AT2G35160.5	40.449	534	262	15	34	557	271	758	4.66e-113	353
MsaG002087	AT2G35160.2	40.449	534	262	15	34	557	307	794	1.39e-112	353
MsaG002087	AT2G35160.3	40.449	534	262	15	34	557	307	794	1.39e-112	353
MsaG002087	AT2G35160.1	40.449	534	262	15	34	557	307	794	1.39e-112	353
MsaG002087	AT2G35160.4	40.449	534	262	15	34	557	307	794	1.39e-112	353
MsaG002087	AT2G22740.2	35.025	611	292	15	3	557	229	790	7.16e-95	306
MsaG002087	AT2G22740.1	35.025	611	292	15	3	557	229	790	7.16e-95	306
MsaG002087	AT1G73100.1	32.685	514	257	14	85	556	202	668	2.03e-70	239
MsaG002087	AT5G04940.2	33.008	512	256	14	85	556	205	669	1.35e-68	234
MsaG002087	AT5G04940.1	33.008	512	256	14	85	556	205	669	1.35e-68	234

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Find 131 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAATTGAAGGGGTG+GGG	0.557230	1:+32065386	MsaT002087.1:CDS
AAAACACCGGAAAGAGAATA+GGG	0.465297	1:+32064379	MsaT002087.1:CDS
AAAATTGAAAGCAAAATTAA+GGG	0.414139	1:+32064311	MsaT002087.1:CDS
AAACATTCTTTGGGAGAACA+TGG	0.531170	1:-32064932	None:intergenic
AAACGTCAATGGGAAAACAC+CGG	0.685237	1:+32064366	MsaT002087.1:CDS
AAAGTTCCCATAACATCTCG+AGG	0.623289	1:-32064885	None:intergenic
AAGACGAATCGTTCAATACT+AGG	0.431282	1:+32065149	MsaT002087.1:CDS
AAGAGAATAGGGCATGTAGA+TGG	0.472138	1:+32064390	MsaT002087.1:CDS
AAGTTCCCATAACATCTCGA+GGG	0.638178	1:-32064884	None:intergenic
AATCGTTCAATACTAGGTGG+TGG	0.591568	1:+32065155	MsaT002087.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	32064129	32065894	32064129	ID=MsaG002087
Chr1	mRNA	32064129	32065894	32064129	ID=MsaT002087.1;Parent=MsaG002087
Chr1	exon	32064129	32065533	32064129	ID=MsaT002087.1.exon1;Parent=MsaT002087.1
Chr1	CDS	32064129	32065533	32064129	ID=cds.MsaT002087.1;Parent=MsaT002087.1
Chr1	exon	32065623	32065894	32065623	ID=MsaT002087.1.exon2;Parent=MsaT002087.1
Chr1	CDS	32065623	32065894	32065623	ID=cds.MsaT002087.1;Parent=MsaT002087.1

Gene Sequence

>MsaT002087.1

ATGCAAAGTTCAAAATCTTTTGGGAGAAAGCGTGAAGAATGGTCATATACTGAGAACCTTTCATCTTCTGACAAGATAAGTAGTGACACTGTTTTGAAACGGAGAAAGGTGAATAAAGCATTAACAATTTTTAGGGACTTATCACACAAACTCTATTGTGAATACAAGTCAAACCAACCTGTAAAATTGAAAGCAAAATTAAGGGCTTTAGCCGAAGCTACAAGGTTTATGAAGGCGAAACGTCAATGGGAAAACACCGGAAAGAGAATAGGGCATGTAGATGGAATTGAAGTTGGTGACCAATTTCAATATAGGGCCGAACTTATTGTAATCGGTCTCCATCAACAACACTCATGTGGTATCGATTATTTGGGTAAAGGGGAGGGTTCTTTGGCAACCAGCATTGTTGTAACTCATAGATATGCGAATGTTATGAAGTCTTCTGGTTGTTTGCTTTATGAAGGTCATGGTGGTAACCCTAATATAAGGGACGGTGTCGCGCCTCATGATCAGAAATTGGCGCGCGGAAATCTTGCTTTGTGGAATAGTATGAATGCGGGGAGTCCTGTTAGGGTTATATTGCAGGTTTCTGAAAAATCTGAAGTGATGGAAGAGTTGAGCAACAATGTTTCTTATTCATACATATATGATGGGTTGTATTTTGTGGACAATGTGACTCGAGTAAGAGGACAATTTGGAAAACTTGTTTTCAAGTTTGTGCTTAAGAAAATTCAGGACCAACCGGCTAGTGTTTCCCCTCGAGATGTTATGGGAACTTTCCAGAAGAGACACAATTCTGAAGGCCATGTTCTCCCAAAGAATGTTTTTCCTCGAGATGTTATGGAAACCAAAACTTTCCGAAAAAGACAAATGTCTAGAGGTCTTGTTCTCTCCAAGGATGTTGTTCGAATCAATGATATTTCGGAGGGCAAAGAAAAGTTCCCTATTCGGGTGGTGACACCTATAAGCTATGTGGAGATACCTAAACCCTTCGGTTACCTAGTCAATATGACTTATCCAAAGACGAATCGTTCAATACTAGGTGGTGGATGTAATTGTAAGAATGCATGTGTTGATTGTCTTGAATGTGTTTGCATAGCTAAGAATGGGGGGACATTAGCCTATGATGGTAACAGAAAACTTGTTTCCCAAATGAAATCATCCTTTATATATGAGTGTGGCCCTTCTTGCTTGTGTTCCTCGTCTTGCATCAGCCGAGTGAGTCAATCCGGTATTCAGTTCCAACTTGAAATCTTCAAAACAAAATTGAAGGGGTGGGGTGTTCGAACACGCTCTTTCATTCCATCCGGAAGCTTTGTGTGTGAGCTCATTGGAGAAGTTGTTCATCTCAACAACAAAAAAGTTGGATCAAATCTACATGTTGATGAGTATACAATTAATATAGGTGCTTCTGGCAAGGTCTTCATTGATGCAACGCGACATGGAAACATTGGAAGGTTTATAAATCATAGTTGTTCTCCTAACCTAGTTGTGAAAGATGTTATGTATGATCACAGTGATAAGAGTTTACCCCACAAAATGTTGTTTGCTACAAAGGACATACCCGCAGGTAGAGAGCTGAGTTATGATTACAATTGCTGCAAGGTGAACATCAAGGTTTTGAGTAAAATTTGCTACTGTGGTTCATTGGAATGCAATGGACAAATCTACATTTGA

Protein sequence

>MsaT002087.1

MQSSKSFGRKREEWSYTENLSSSDKISSDTVLKRRKVNKALTIFRDLSHKLYCEYKSNQPVKLKAKLRALAEATRFMKAKRQWENTGKRIGHVDGIEVGDQFQYRAELIVIGLHQQHSCGIDYLGKGEGSLATSIVVTHRYANVMKSSGCLLYEGHGGNPNIRDGVAPHDQKLARGNLALWNSMNAGSPVRVILQVSEKSEVMEELSNNVSYSYIYDGLYFVDNVTRVRGQFGKLVFKFVLKKIQDQPASVSPRDVMGTFQKRHNSEGHVLPKNVFPRDVMETKTFRKRQMSRGLVLSKDVVRINDISEGKEKFPIRVVTPISYVEIPKPFGYLVNMTYPKTNRSILGGGCNCKNACVDCLECVCIAKNGGTLAYDGNRKLVSQMKSSFIYECGPSCLCSSSCISRVSQSGIQFQLEIFKTKLKGWGVRTRSFIPSGSFVCELIGEVVHLNNKKVGSNLHVDEYTINIGASGKVFIDATRHGNIGRFINHSCSPNLVVKDVMYDHSDKSLPHKMLFATKDIPAGRELSYDYNCCKVNIKVLSKICYCGSLECNGQIYI*