AlfalfaGEDB | MsaG002110

M. sativa ssp. caerulea / MsaG002110

KEGG: K22246
GO: GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006591 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901605 GO:1901700
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002110	XP_013467327.1	96.996	233	7	0	1	233	1	233	3.79e-168	473

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002110	sp\|Q9ZV06\|NATAL_ARATH	67.117	222	70	2	12	232	15	234	3.28e-104	304

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002110	tr\|B7FGG9\|B7FGG9_MEDTR	96.996	233	7	0	1	233	1	233	1.81e-168	473

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TFs/TRs:

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Gene ID	Type	Classification
MsaG002110	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002110	MtrunA17_Chr1g0170871	96.996	233	7	0	1	233	1	233	3.48e-172	473

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002110	AT2G39020.1	67.117	222	70	2	12	232	15	234	3.33e-105	304
MsaG002110	AT2G39030.1	60.811	222	85	1	7	228	3	222	1.63e-100	291

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Find 70 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGTCGTTGTCGAAA+TGG	0.382151	1:-32525849	None:intergenic
AAACGGATGCGGGTGAAAAC+TGG	0.312751	1:-32525637	None:intergenic
AAATGGGTCGTTGTCGAAAT+GGG	0.450614	1:-32525848	None:intergenic
AACGGATGCGGGTGAAAACT+GGG	0.545290	1:-32525636	None:intergenic
AACTGGGTGGCGTGGGAGGG+CGG	0.457571	1:-32525620	None:intergenic
AAGGGGTGGCTAAACGGATG+CGG	0.495061	1:-32525648	None:intergenic
ACTCACTGGGGAGAATTTGG+AGG	0.518312	1:+32526221	MsaT002110.1:CDS
AGAGACTTCGAGGATGAGTA+TGG	0.377377	1:-32525806	None:intergenic
AGAGAGTGTTATAGAAGGAA+AGG	0.429394	1:+32526045	MsaT002110.1:CDS
AGGGGTGGCTAAACGGATGC+GGG	0.502459	1:-32525647	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	32525562	32526263	32525562	ID=MsaG002110
Chr1	mRNA	32525562	32526263	32525562	ID=MsaT002110.1;Parent=MsaG002110
Chr1	exon	32525562	32526263	32525562	ID=MsaT002110.1.exon1;Parent=MsaT002110.1
Chr1	CDS	32525562	32526263	32525562	ID=cds.MsaT002110.1;Parent=MsaT002110.1

Gene Sequence

>MsaT002110.1

ATGGCCTCCGCAGCACCGCCACCACCACCGACAGAACCCCCATCAACCATGCCAGAAACCGCCCTCCCACGCCACCCAGTTTTCACCCGCATCCGTTTAGCCACCCCTTCTGACGTTCCCTACATCCACAAACTAATGCATCAAATGGCCGTTTTCGAACAACTCACACATCTCATGACCGCCACAGAAGCTTCCTACTCCACCACTCTCTTCTCCCCTGAAAACAAACCCTTCCATTCCACCACCATACTCATCCTCGAAGTCTCTCAAAACCCCTTCACCGATACCCATTTCGACAACGACCCATTTTACAAACCCATCACAAAAACTGTTAACTTGGATCTCCCAATTGATGACCCAGAGAAGGAAAACTTCAAAACTCAACATGGAAATGAAGTTTTCGTTGCTGGGTTTGTTTTGTTTTTTCCTAACTACTCAACTTTTTTGGGGAAACATGGGTTTTATGTTGAGGATCTGTTTGTGAGAGAGTGTTATAGAAGGAAAGGGTTTGGGAAGATGTTGCTTACTGCTGTTGCGAAACAAGCTGTGAAAATGGGGTATGGAAGAGTTGAATGGGTTGTTCTTGATTGGAATGTTAATGCTATAAAGTTTTATGAAGATATGGGTGCTAAGATTTTGCAGGAATGGAGGCTTTGCAGACTCACTGGGGAGAATTTGGAGGCTTATGGAGCTATTGAGTAA

Protein sequence

>MsaT002110.1

MASAAPPPPPTEPPSTMPETALPRHPVFTRIRLATPSDVPYIHKLMHQMAVFEQLTHLMTATEASYSTTLFSPENKPFHSTTILILEVSQNPFTDTHFDNDPFYKPITKTVNLDLPIDDPEKENFKTQHGNEVFVAGFVLFFPNYSTFLGKHGFYVEDLFVRECYRRKGFGKMLLTAVAKQAVKMGYGRVEWVVLDWNVNAIKFYEDMGAKILQEWRLCRLTGENLEAYGAIE*