AlfalfaGEDB | MsaG002130

M. sativa ssp. caerulea / MsaG002130

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF12796.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002130	RHN78917.1	94.218	588	33	1	1	588	17	603	0.0	1068

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002130	sp\|P93755\|C3H30_ARATH	48.516	674	290	19	1	647	34	677	0.0	539

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002130	tr\|A0A396JW33\|A0A396JW33_MEDTR	94.218	588	33	1	1	588	17	603	0.0	1068

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TFs/TRs:

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Gene ID	Type	Classification
MsaG002130	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002130	MtrunA17_Chr1g0171151	94.218	588	33	1	1	588	17	603	0.0	1068
MsaG002130	MtrunA17_Chr3g0088521	56.848	679	249	17	1	648	31	696	0.0	658
MsaG002130	MtrunA17_Chr7g0257831	54.018	672	269	20	1	647	33	689	0.0	612
MsaG002130	MtrunA17_Chr3g0092171	45.887	462	158	10	1	451	69	449	1.26e-122	374
MsaG002130	MtrunA17_Chr5g0437251	35.038	665	337	19	15	636	30	642	1.45e-110	348
MsaG002130	MtrunA17_Chr5g0430211	36.458	672	336	21	15	638	35	663	1.27e-108	343
MsaG002130	MtrunA17_Chr1g0187591	48.494	332	150	4	14	343	32	344	5.84e-102	325
MsaG002130	MtrunA17_Chr3g0092221	46.465	396	149	10	64	451	12	352	9.67e-101	313
MsaG002130	MtrunA17_Chr3g0113651	42.771	332	130	4	14	345	9	280	1.04e-87	283
MsaG002130	MtrunA17_Chr3g0105131	36.117	443	194	12	36	474	37	394	4.98e-72	241

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002130	AT2G41900.1	48.516	674	290	19	1	647	34	677	0.0	539
MsaG002130	AT5G12850.1	47.281	662	289	23	5	638	32	661	3.20e-174	513
MsaG002130	AT5G58620.1	49.552	335	147	2	12	344	11	325	2.57e-109	343
MsaG002130	AT2G40140.2	35.429	652	286	20	15	647	33	568	1.79e-99	317
MsaG002130	AT2G40140.1	35.429	652	286	20	15	647	33	568	1.79e-99	317
MsaG002130	AT3G55980.1	40.144	416	197	8	15	423	30	400	9.49e-94	301
MsaG002130	AT3G55980.2	40.144	416	197	8	15	423	97	467	3.33e-93	301
MsaG002130	AT1G03790.1	60.563	142	48	3	206	343	64	201	1.18e-51	184
MsaG002130	AT2G25900.2	64.545	110	39	0	224	333	86	195	3.25e-51	180
MsaG002130	AT2G25900.1	64.545	110	39	0	224	333	86	195	3.25e-51	180

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Find 160 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCCTTCCTCTGTTGT+TGG	0.292864	1:+32892994	MsaT002130.1:CDS
AAAGCAGATGCAGATGAACG+CGG	0.707165	1:-32892304	None:intergenic
AACAACAGAGGAAGGGATTT+TGG	0.205426	1:-32892992	None:intergenic
AACAGCTCAAGTCATTCATA+AGG	0.503787	1:-32892585	None:intergenic
AACATCAATACTACCATAAG+TGG	0.474991	1:-32891477	None:intergenic
AACCCGGTCCTAGTTCTTGT+CGG	0.478599	1:+32892614	MsaT002130.1:CDS
AACTGGATACTGTTTATTCT+CGG	0.446949	1:-32891891	None:intergenic
AACTTCTCTGTATTCGTCTC+AGG	0.452345	1:-32893186	None:intergenic
AAGAAGAGCCTAATCTATCA+TGG	0.461395	1:+32893136	MsaT002130.1:CDS
AAGACGATGCTCATCATTCT+TGG	0.366937	1:-32892818	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	32891278	32893248	32891278	ID=MsaG002130
Chr1	mRNA	32891278	32893248	32891278	ID=MsaT002130.1;Parent=MsaG002130
Chr1	exon	32891278	32893248	32891278	ID=MsaT002130.1.exon1;Parent=MsaT002130.1
Chr1	CDS	32891278	32893248	32891278	ID=cds.MsaT002130.1;Parent=MsaT002130.1

Gene Sequence

>MsaT002130.1

ATGGAAACACTAGCTGTTAATATTAAAGACTCTTTTCCAAGTTTACTGGTACTTGCTTCTCACAATGACTCTGAAGGTTTTAAGCTTCTTTTAGACAAAGAAGGAGCTTCTTCGATTAATGAGGCGGGAATTTGGTACGGTCGACAAAATGGCTCTACGGAGATTGTTCTTGAGCACAAAACTCCTTTGATGGTTGCTGCCACTTATGGTAGTATTGATGTTATGAAGGTTATACTCTCGTATCCGGAGGTTGATGTGAATTCCGCTTGCATGGCGAACAAAAGTACTGCCCTTCACTGTGCTGCTTCTGGTGGGTCTGCTAATGTTGTTGATGCTGTGAGGATTCTTATTTCCGCGGGTGCAAATGTTAGTTGTGTCAATAGCAATGGAAATCGTCCTGTTGATCTCATTGTTGTTCCTCCTAATATGCAAAGCTTGAAAGTAATTCTTGAGAAACTTCTTTTGGATAATGCCTCTGATAATATATCTGTTGGTGATTTCTCTATTTCAGCGTCTGTTGATTCTTCTAGTTCTGGTTTGCTTGAAAATGGAATGTCTTTGACATACCCTCCTTCAGTGTCACCACCTTCTCCTGTGGTGGATTCGAAATTTACCGAGAATAAACAGTATCCAGTTGATCCATCATTTCCTGGTATAAAAAACAGCATGTATGCAAGCGATGAATTTCGGATGTTTTCTTTCAAGGTCCTTCGTTGTTCCCGTTCACAATCTCATGATTGGACTGAGTGTCCATATGTGCATCCCGGAGAGAAGGCTCGGAGGAGAGACCTTAGGAGGTTCTCTTACAGCTGCATGCCTTGCCCTGAATTCAGGAAAGGGGCTTGTAGGCATGGAGATAAGTGTGAATATGCTCATGGAATATTCGAGTGCTGGCTACACCCAGATCAGTATCGAACACGACTCTGTAAAGATAGGCCTAGTTGTAATAAAAAGGTGTGTTTTTTCGCACACGATGAAAAGGAATTGAGGCCACTGCCTTCGTTAACTGGATCTGGCGTTCCTTCACCGCGTTCATCTGCATCTGCTTTTAATGCGATGGAATTGGCTGCTGCAATGAATCTTTTGGTCGGTTCACCCCCGTCAGTCTCTTCCTTCCATCCATCTAATTTTTCCCAGCCTATGCCCCCTTCTGGAAATGGCATCTCATTCTCAAGTGCTGCTTGGGCACAGCAAAATGTTCTAGGAAGCAATTTTCAATCTAGTAGTCGGTTGGGATCTTCTCTCCGCGCTTGCAACATTCAGCCTGAAAACTTCAATATGCTGAGCTATTTAGATGGGCAGCAGCACCTTATGAATGACTTGAGCTGTTTCTCACAACCCGGTCCTAGTTCTTGTCGGTCTAAGGCACTAACTCCATCAAATCTTGAAGACCTCTTTTCTGCGGAAATTTTGTCATCTCCTAGGTATTCTGACCCAGCAATGGCTTCTGTTTTTTCCCCTTCACATGAATCAGCTGCTATGAATGAGCTTAAACAATTTCAAAATATGTTATCGCCTTCAAATACTAATATGCTGTCTCCCAAGAATGATGAGCATCGTCTTTTACAAGCTTCATTTGGTGTCCCTTCATGCGGTAGCATGTCACCTAGAAGGCTTGAACCAGTCTCCCCACTGAGCCCTCAAATGTCTGCATTTCCTCATCGCGAGAAACAGCAGCAACAGCTGCATAGTGTTAGTTCTAGGGAACTTGGTTCCAAAATCCCTTCCTCTGTTGTTGGACCACCTACGGACCCATGGTCTTATTCTCCTAATGAGATATCTGATTGGTCGTTATATGGAGACGAACTAAGTCGCCAAATGCACAATGCATCCTCATTTGAACATAAAATCATTGGGAAAGAAGAGCCTAATCTATCATGGGTCCAAGTCCTACAGAATAATTCCCCACCTGAGACGAATACAGAGAAGTTTGCATCTTCTGGTATATTGAATTCCAATTCGCAAATTTAA

Protein sequence

>MsaT002130.1

METLAVNIKDSFPSLLVLASHNDSEGFKLLLDKEGASSINEAGIWYGRQNGSTEIVLEHKTPLMVAATYGSIDVMKVILSYPEVDVNSACMANKSTALHCAASGGSANVVDAVRILISAGANVSCVNSNGNRPVDLIVVPPNMQSLKVILEKLLLDNASDNISVGDFSISASVDSSSSGLLENGMSLTYPPSVSPPSPVVDSKFTENKQYPVDPSFPGIKNSMYASDEFRMFSFKVLRCSRSQSHDWTECPYVHPGEKARRRDLRRFSYSCMPCPEFRKGACRHGDKCEYAHGIFECWLHPDQYRTRLCKDRPSCNKKVCFFAHDEKELRPLPSLTGSGVPSPRSSASAFNAMELAAAMNLLVGSPPSVSSFHPSNFSQPMPPSGNGISFSSAAWAQQNVLGSNFQSSSRLGSSLRACNIQPENFNMLSYLDGQQHLMNDLSCFSQPGPSSCRSKALTPSNLEDLFSAEILSSPRYSDPAMASVFSPSHESAAMNELKQFQNMLSPSNTNMLSPKNDEHRLLQASFGVPSCGSMSPRRLEPVSPLSPQMSAFPHREKQQQQLHSVSSRELGSKIPSSVVGPPTDPWSYSPNEISDWSLYGDELSRQMHNASSFEHKIIGKEEPNLSWVQVLQNNSPPETNTEKFASSGILNSNSQI*