AlfalfaGEDB | MsaG002142

M. sativa ssp. caerulea / MsaG002142

KEGG: K21548
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031326 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002142	KEH41414.1	88.060	201	8	2	1	201	1	185	2.27e-117	347

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002142	sp\|Q69XV0\|BZP50_ORYSJ	43.114	167	81	3	40	199	60	219	7.50e-28	113

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002142	tr\|A0A072VHD6\|A0A072VHD6_MEDTR	88.060	201	8	2	1	201	1	185	1.09e-117	347

TFs/TRs:

Gene ID	Type	Classification
MsaG002142	TF	bZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000116	MsaG002142	0.875185	7.789387e-68	1.129385e-64
MsaG000348	MsaG002142	0.821640	6.377707e-53	1.464946e-50
MsaG001232	MsaG002142	0.843831	2.055237e-58	9.062880e-56
MsaG001259	MsaG002142	0.809649	2.911228e-50	4.929642e-48
MsaG001306	MsaG002142	0.803590	5.459084e-49	8.010151e-47
MsaG001331	MsaG002142	0.811748	1.028901e-50	1.833780e-48
MsaG002133	MsaG002142	0.813536	4.198254e-51	7.822608e-49
MsaG002142	MsaG003206	0.817089	6.870564e-52	1.400823e-49
MsaG002142	MsaG003721	0.831640	2.686309e-55	8.151105e-53
MsaG002142	MsaG004010	0.831442	3.005093e-55	9.065103e-53
MsaG002142	MsaG004028	0.819314	2.167347e-52	4.681390e-50
MsaG002142	MsaG004067	0.829824	7.447434e-55	2.144524e-52
MsaG002142	MsaG004326	0.843787	2.111570e-58	9.298445e-56
MsaG002142	MsaG004329	0.854809	1.856907e-61	1.191407e-58
MsaG002142	MsaG004749	0.836671	1.493767e-56	5.260878e-54
MsaG002142	MsaG004934	0.826863	3.828800e-54	1.014221e-51
MsaG002142	MsaG004984	0.815747	1.367039e-51	2.693076e-49
MsaG002142	MsaG005118	0.815053	1.947526e-51	3.769721e-49
MsaG002142	MsaG005126	0.834167	6.371948e-56	2.081755e-53
MsaG002142	MsaG005460	0.836370	1.780375e-56	6.214266e-54
MsaG002142	MsaG005439	0.835683	2.655256e-56	9.077541e-54
MsaG002142	MsaG005479	0.804448	3.628503e-49	5.430926e-47
MsaG002142	MsaG005922	0.817229	6.392809e-52	1.308121e-49
MsaG002142	MsaG006071	0.839005	3.780241e-57	1.430549e-54
MsaG002142	MsaG006548	0.851169	2.018791e-60	1.139137e-57
MsaG002142	MsaG006599	0.831160	3.522053e-55	1.053748e-52
MsaG002142	MsaG006700	0.801412	1.527408e-48	2.132111e-46
MsaG002142	MsaG006762	0.806245	1.530688e-49	2.389335e-47
MsaG002142	MsaG006901	0.829455	9.147753e-55	2.606417e-52
MsaG002142	MsaG007146	0.833852	7.633752e-56	2.470714e-53
MsaG002142	MsaG007677	0.812735	6.280218e-51	1.146978e-48
MsaG002142	MsaG007826	0.803404	5.964881e-49	8.714687e-47
MsaG002142	MsaG007836	0.852057	1.134647e-60	6.604742e-58
MsaG002142	MsaG007988	0.822865	3.324581e-53	7.891812e-51
MsaG002142	MsaG008125	0.834156	6.411811e-56	2.094117e-53
MsaG002142	MsaG008337	0.800766	2.067124e-48	2.843716e-46
MsaG002142	MsaG008405	0.816703	8.378775e-52	1.691376e-49
MsaG002142	MsaG008878	0.809901	2.571248e-50	4.380510e-48
MsaG002142	MsaG008919	0.820687	1.055010e-52	2.362773e-50
MsaG002142	MsaG010146	0.807399	8.750538e-50	1.403648e-47
MsaG002142	MsaG010214	0.822508	4.020435e-53	9.451854e-51
MsaG002142	MsaG011002	0.832309	1.840366e-55	5.693519e-53
MsaG002142	MsaG011025	0.808744	4.541515e-50	7.524558e-48
MsaG002142	MsaG011147	0.850015	4.245852e-60	2.302193e-57
MsaG002142	MsaG011315	0.813424	4.441221e-51	8.252213e-49
MsaG002142	MsaG012012	0.800873	1.966785e-48	2.712125e-46
MsaG002142	MsaG012026	0.817092	6.858983e-52	1.398569e-49
MsaG002142	MsaG012334	0.847528	2.062555e-59	1.028101e-56
MsaG002142	MsaG012447	0.820093	1.441316e-52	3.177890e-50
MsaG002142	MsaG012565	0.806727	1.212573e-49	1.914397e-47
MsaG002142	MsaG013553	0.814127	3.115664e-51	5.891981e-49
MsaG002142	MsaG013908	0.802211	1.048912e-48	1.490988e-46
MsaG002142	MsaG014042	0.840930	1.197366e-57	4.812775e-55
MsaG002142	MsaG014159	0.832509	1.641940e-55	5.109537e-53
MsaG002142	MsaG014242	0.840915	1.207800e-57	4.852459e-55
MsaG002142	MsaG014314	0.820181	1.376466e-52	3.042028e-50
MsaG002142	MsaG014305	0.832024	2.162855e-55	6.636633e-53
MsaG002142	MsaG014486	0.837516	9.108752e-57	3.291631e-54
MsaG002142	MsaG014512	0.850275	3.593187e-60	1.965646e-57
MsaG002142	MsaG014670	0.806656	1.255116e-49	1.978234e-47
MsaG002142	MsaG014842	0.800205	2.687233e-48	3.650017e-46
MsaG002142	MsaG015237	0.820882	9.520875e-53	2.143395e-50
MsaG002142	MsaG015357	0.809813	2.685525e-50	4.565498e-48
MsaG002142	MsaG016118	0.809484	3.157780e-50	5.326106e-48
MsaG002142	MsaG016384	0.892842	2.432235e-74	8.335535e-71
MsaG002142	MsaG016416	0.808832	4.348283e-50	7.219622e-48
MsaG002142	MsaG016503	0.844558	1.313652e-58	5.932488e-56
MsaG002142	MsaG016794	0.812220	8.129941e-51	1.465849e-48
MsaG002142	MsaG017022	0.826260	5.320971e-54	1.386019e-51
MsaG002142	MsaG017041	0.801095	1.772093e-48	2.455913e-46
MsaG002142	MsaG017407	0.829117	1.103997e-54	3.115271e-52
MsaG002142	MsaG017887	0.854351	2.515682e-61	1.588173e-58
MsaG002142	MsaG017973	0.816053	1.169001e-51	2.320895e-49
MsaG002142	MsaG018098	0.808643	4.771691e-50	7.886372e-48
MsaG002142	MsaG018405	0.854218	2.747479e-61	1.726168e-58
MsaG002142	MsaG018493	0.826951	3.648342e-54	9.687925e-52
MsaG002142	MsaG018849	0.833528	9.187996e-56	2.945829e-53
MsaG002142	MsaG019060	0.832558	1.597635e-55	4.978507e-53
MsaG002142	MsaG019298	0.833051	1.206661e-55	3.814745e-53
MsaG002142	MsaG019312	0.858895	1.177880e-62	8.782253e-60
MsaG002142	MsaG019435	0.812598	6.725725e-51	1.224188e-48
MsaG002142	MsaG019507	0.826770	4.028713e-54	1.064378e-51
MsaG002142	MsaG019620	0.808252	5.774969e-50	9.455368e-48
MsaG002142	MsaG020695	0.824531	1.359428e-53	3.376195e-51
MsaG002142	MsaG020730	0.821531	6.757465e-53	1.547659e-50
MsaG002142	MsaG020697	0.803767	5.018241e-49	7.393649e-47
MsaG002142	MsaG020859	0.810722	1.713110e-50	2.977461e-48
MsaG002142	MsaG020934	0.816892	7.600945e-52	1.541881e-49
MsaG002142	MsaG021090	0.830873	4.138309e-55	1.228000e-52
MsaG002142	MsaG021496	0.835403	3.123907e-56	1.059078e-53
MsaG002142	MsaG021927	0.805420	2.277584e-49	3.486722e-47
MsaG002142	MsaG021888	0.846189	4.776781e-59	2.276634e-56
MsaG002142	MsaG021996	0.806602	1.287915e-49	2.027446e-47
MsaG002142	MsaG022263	0.800964	1.884749e-48	2.604290e-46
MsaG002142	MsaG022579	0.802551	8.934820e-49	1.280019e-46
MsaG002142	MsaG022880	0.832978	1.257668e-55	3.967572e-53
MsaG002142	MsaG023078	0.825634	7.482951e-54	1.915458e-51
MsaG002142	MsaG023997	0.804285	3.921952e-49	5.848289e-47
MsaG002142	MsaG024090	0.804851	2.991918e-49	4.520341e-47
MsaG002142	MsaG025530	0.840350	1.695344e-57	6.691525e-55
MsaG002142	MsaG025861	0.839205	3.357052e-57	1.278201e-54
MsaG002142	MsaG025985	0.830054	6.549310e-55	1.898385e-52
MsaG002142	MsaG026854	0.817356	5.987752e-52	1.229206e-49
MsaG002142	MsaG027102	0.831230	3.385407e-55	1.014900e-52
MsaG002142	MsaG027288	0.826752	4.068267e-54	1.074326e-51
MsaG002142	MsaG027432	0.813684	3.895984e-51	7.286327e-49
MsaG002142	MsaG027544	0.831224	3.397611e-55	1.018366e-52
MsaG002142	MsaG027543	0.866414	5.822974e-65	5.822380e-62
MsaG002142	MsaG027547	0.863133	6.143048e-64	5.389799e-61
MsaG002142	MsaG027595	0.819750	1.724960e-52	3.768564e-50
MsaG002142	MsaG027711	0.848471	1.136611e-59	5.847015e-57
MsaG002142	MsaG027759	0.840712	1.364459e-57	5.446937e-55
MsaG002142	MsaG028088	0.841921	6.583245e-58	2.730931e-55
MsaG002142	MsaG028181	0.846103	5.040749e-59	2.395566e-56
MsaG002142	MsaG028423	0.847320	2.351550e-59	1.163941e-56
MsaG002142	MsaG028483	0.814611	2.437787e-51	4.666314e-49
MsaG002142	MsaG028585	0.817355	5.988951e-52	1.229445e-49
MsaG002142	MsaG028762	0.843719	2.200384e-58	9.668982e-56
MsaG002142	MsaG028831	0.809255	3.533875e-50	5.927084e-48
MsaG002142	MsaG028961	0.801065	1.797733e-48	2.489684e-46
MsaG002142	MsaG029038	0.809552	3.053347e-50	5.158286e-48
MsaG002142	MsaG029076	0.885673	1.433174e-71	3.391840e-68
MsaG002142	MsaG029284	0.834925	4.116343e-56	1.375783e-53
MsaG002142	MsaG029684	0.818440	3.415058e-52	7.209500e-50
MsaG002142	MsaG030194	0.816409	9.742680e-52	1.951902e-49
MsaG002142	MsaG030197	0.839816	2.333648e-57	9.057614e-55
MsaG002142	MsaG030455	0.830118	6.319364e-55	1.835079e-52
MsaG002142	MsaG030524	0.801785	1.281814e-48	1.804463e-46
MsaG002142	MsaG031104	0.882928	1.472926e-70	3.052821e-67
MsaG002142	MsaG031527	0.803820	4.895045e-49	7.220729e-47
MsaG002142	MsaG031814	0.824335	1.511018e-53	3.732761e-51
MsaG002142	MsaG032564	0.820880	9.527290e-53	2.144758e-50
MsaG002142	MsaG032713	0.846046	5.220528e-59	2.476328e-56
MsaG002142	MsaG034018	0.811422	1.210180e-50	2.139722e-48
MsaG002142	MsaG034446	0.802708	8.296077e-49	1.192739e-46
MsaG002142	MsaG034621	0.814870	2.137834e-51	4.119089e-49
MsaG002142	MsaG035144	0.851953	1.213692e-60	7.039452e-58
MsaG002142	MsaG035263	0.825166	9.648407e-54	2.438128e-51
MsaG002142	MsaG035334	0.814117	3.131514e-51	5.920462e-49
MsaG002142	MsaG035673	0.883383	1.005190e-70	2.128883e-67
MsaG002142	MsaG036283	0.826733	4.110111e-54	1.084807e-51
MsaG002142	MsaG036714	0.803818	4.899409e-49	7.226902e-47
MsaG002142	MsaG036828	0.800139	2.770989e-48	3.758236e-46
MsaG002142	MsaG037804	0.825165	9.651746e-54	2.438937e-51
MsaG002142	MsaG038500	0.817802	4.754567e-52	9.873301e-50
MsaG002142	MsaG039607	0.830831	4.239382e-55	1.256411e-52
MsaG002142	MsaG040100	0.824649	1.275883e-53	3.178738e-51
MsaG002142	MsaG040511	0.804126	4.229797e-49	6.284106e-47
MsaG002142	MsaG040637	0.830663	4.658747e-55	1.373997e-52
MsaG002142	MsaG040748	0.820432	1.206407e-52	2.683943e-50
MsaG002142	MsaG042534	0.840112	1.954778e-57	7.657844e-55
MsaG002142	MsaG042720	0.823454	2.426205e-53	5.851476e-51
MsaG002142	MsaG042911	0.800609	2.225348e-48	3.050539e-46
MsaG002142	MsaG043029	0.887293	3.520733e-72	9.035467e-69
MsaG002142	MsaG044090	0.808764	4.496876e-50	7.453983e-48
MsaG002142	MsaG044115	0.824582	1.322916e-53	3.289921e-51
MsaG002142	MsaG044265	0.815404	1.628523e-51	3.180505e-49
MsaG002142	MsaG044316	0.844917	1.052347e-58	4.810062e-56
MsaG002142	MsaG044709	0.832503	1.647684e-55	5.126429e-53
MsaG002142	MsaG044865	0.808727	4.578704e-50	7.583074e-48
MsaG002142	MsaG044901	0.809983	2.469634e-50	4.215645e-48
MsaG002142	MsaG045243	0.806267	1.514725e-49	2.365652e-47
MsaG002142	MsaG045474	0.848311	1.258196e-59	6.438103e-57
MsaG002142	MsaG045606	0.869798	4.802828e-66	5.518385e-63
MsaG002142	MsaG045758	0.805693	1.997069e-49	3.076941e-47
MsaG002142	MsaG045885	0.814435	2.665630e-51	5.080201e-49
MsaG002142	MsaG045939	0.807193	9.674394e-50	1.544236e-47
MsaG002142	MsaG046137	0.804223	4.038976e-49	6.014116e-47
MsaG002142	MsaG046368	0.806558	1.315874e-49	2.069252e-47
MsaG002142	MsaG046724	0.856557	5.767054e-62	3.943043e-59
MsaG002142	MsaG046828	0.839607	2.643184e-57	1.019141e-54
MsaG002142	MsaG046830	0.831542	2.839732e-55	8.591553e-53
MsaG002142	MsaG046869	0.801732	1.314180e-48	1.847834e-46
MsaG002142	MsaG047125	0.822587	3.855632e-53	9.083704e-51
MsaG002142	MsaG002361	0.878181	7.241796e-69	1.201975e-65
MsaG002142	MsaG004310	0.801952	1.184853e-48	1.674343e-46
MsaG002142	MsaG002980	0.818923	2.657619e-52	5.681616e-50
MsaG002142	MsaG000822	0.840461	1.585926e-57	6.281443e-55
MsaG002142	MsaG009146	0.828224	1.810527e-54	4.982424e-52
MsaG002142	MsaG008180	0.856750	5.061231e-62	3.484889e-59
MsaG002142	MsaG012533	0.804790	3.080565e-49	4.647605e-47
MsaG002142	MsaG022641	0.833920	7.340437e-56	2.380698e-53
MsaG002142	MsaG018327	0.833529	9.181820e-56	2.943941e-53
MsaG002142	MsaG023305	0.820284	1.303605e-52	2.888890e-50
MsaG002142	MsaG019766	0.813818	3.641443e-51	6.833414e-49
MsaG002142	MsaG018515	0.802727	8.222256e-49	1.182641e-46
MsaG002142	MsaG019763	0.800343	2.519759e-48	3.433315e-46
MsaG002142	MsaG020007	0.803718	5.138173e-49	7.561699e-47
MsaG002142	MsaG020545	0.802718	8.256326e-49	1.187301e-46
MsaG002142	MsaG027637	0.807403	8.735701e-50	1.401396e-47
MsaG002142	MsaG027150	0.813723	3.821377e-51	7.153671e-49
MsaG002142	MsaG028382	0.814306	2.845214e-51	5.404842e-49
MsaG002142	MsaG028769	0.820104	1.433444e-52	3.161458e-50
MsaG002142	MsaG031514	0.898384	1.276047e-76	5.942560e-73
MsaG002142	MsaG030749	0.803671	5.254314e-49	7.724114e-47
MsaG002142	MsaG033107	0.808742	4.545335e-50	7.530610e-48
MsaG002142	MsaG032963	0.816598	8.841939e-52	1.780038e-49
MsaG002142	MsaG030823	0.812505	7.047445e-51	1.279807e-48
MsaG002142	MsaG032111	0.809653	2.905347e-50	4.920170e-48
MsaG002142	MsaG032852	0.831717	2.572464e-55	7.823555e-53
MsaG002142	MsaG037049	0.809765	2.749904e-50	4.669493e-48
MsaG002142	MsaG036015	0.800720	2.112062e-48	2.902542e-46
MsaG002142	MsaG037042	0.849098	7.627998e-60	4.009321e-57
MsaG002142	MsaG036959	0.829879	7.225097e-55	2.083795e-52
MsaG002142	MsaG036964	0.810872	1.590746e-50	2.774872e-48
MsaG002142	MsaG036777	0.805383	2.318476e-49	3.546292e-47
MsaG002142	MsaG037636	0.803522	5.638516e-49	8.260507e-47
MsaG002142	MsaG042444	0.802586	8.788900e-49	1.260121e-46
MsaG002142	MsaG043553	0.816578	8.935219e-52	1.797922e-49
MsaG002142	MsaG046227	0.820895	9.453779e-53	2.129047e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002142	MtrunA17_Chr1g0171291	87.879	198	8	2	1	198	1	182	6.07e-120	346

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002142	AT1G42990.1	56.250	64	27	1	136	198	155	218	6.24e-14	71.6

Find 86 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGGTTCCCTGCTATGGTTCC+TGG	0.181734	1:+33016860	MsaT002142.1:CDS
CACCTTTGGACCAAAATAAA+AGG	0.232730	1:-33016570	None:intergenic
GAGAGATTCGAAATCGATTT+GGG	0.252626	1:-33014814	None:intergenic
CTAAGAAGGGTGGCTCTAAA+AGG	0.288472	1:+33016966	MsaT002142.1:CDS
AATACCTACTCTTCGTTTCA+AGG	0.332279	1:-33015455	None:intergenic
AGAGAGATTCGAAATCGATT+TGG	0.334822	1:-33014815	None:intergenic
TGTTGCAGAATCCCTGCTGC+TGG	0.361805	1:+33016839	MsaT002142.1:intron
GGAGTCTGCTGTGCTCTTGT+TGG	0.367032	1:+33015593	MsaT002142.1:CDS
GGAACCTCTTGAGGAGTTAC+TGG	0.369486	1:-33015080	None:intergenic
TGATCATCCGATTGAGGGAT+TGG	0.372571	1:-33015023	None:intergenic
TGAAGGGGAATGCAGAAGAT+TGG	0.381118	1:+33015479	MsaT002142.1:CDS
GGAACCTCTTGAGGAGTTAC+TGG	0.381189	1:-33015125	None:intergenic
TCAGAGATATTATTACTGTT+TGG	0.385576	1:-33016990	None:intergenic
TACATAAAGCTCAATAACTA+TGG	0.394517	1:-33016356	None:intergenic
TTGCAATCGCGTGGTGGCTT+TGG	0.414223	1:+33015552	MsaT002142.1:CDS
TTTCAGGCAGATGAGGAATA+GGG	0.426727	1:+33015386	MsaT002142.1:intron
AGCAAAAGGATGTTCACCTT+TGG	0.429049	1:-33016584	None:intergenic
GGTTCCCTGCTATGGTTCCT+GGG	0.429306	1:+33016861	MsaT002142.1:CDS
TGCTGCTGGGTTCCCTGCTA+TGG	0.441437	1:+33016853	MsaT002142.1:CDS
GAGTCTGCTGTGCTCTTGTT+GGG	0.447976	1:+33015594	MsaT002142.1:CDS
TGGTGCCCAGGAACCATAGC+AGG	0.462764	1:-33016866	None:intergenic
TCATTCTGACAAAGACCAAC+AGG	0.468319	1:-33016530	None:intergenic
CAAATCTGGATTACAGCAAA+AGG	0.469492	1:-33016598	None:intergenic
AACCTTGATCATCCGATTGA+GGG	0.476612	1:-33015028	None:intergenic
CCTCGACCCAATCCCTCAAT+CGG	0.479515	1:+33015016	MsaT002142.1:CDS
AGGTTCCTTCTGATGAAGGC+AGG	0.489060	1:+33015096	MsaT002142.1:CDS
GGGAATTGCGTCGTCATCAT+CGG	0.491346	1:+33014959	MsaT002142.1:CDS
GATCATCCGATTGAGGGATT+GGG	0.498027	1:-33015022	None:intergenic
AGCAGACTCCTGCATGGTCA+TGG	0.499805	1:-33015580	None:intergenic
CAAGAGGTTCCTTCTGATGA+AGG	0.500088	1:+33015092	MsaT002142.1:CDS
ATAGCAGGGAACCCAGCAGC+AGG	0.506596	1:-33016851	None:intergenic
ATGCTGAGAACCATGCTTTG+CGG	0.510527	1:+33015523	MsaT002142.1:CDS
AAACCTTGATCATCCGATTG+AGG	0.512112	1:-33015029	None:intergenic
CTGTTGTTAGCCACAGTGGA+AGG	0.514860	1:-33016908	None:intergenic
TGGAACACAAAGGTCTAAGA+AGG	0.519321	1:+33016952	MsaT002142.1:CDS
CCGATTGAGGGATTGGGTCG+AGG	0.520843	1:-33015016	None:intergenic
GGACCAAAATAAAAGGCTAC+AGG	0.521330	1:-33016563	None:intergenic
TGGTGCTCCCATGACCATGC+AGG	0.523079	1:+33015572	MsaT002142.1:CDS
GTTGCAGAATCCCTGCTGCT+GGG	0.537879	1:+33016840	MsaT002142.1:intron
TCTTCTCATGTCTGATGCCG+AGG	0.542387	1:+33014938	MsaT002142.1:CDS
AGGAGTTACTGGATCAACTC+TGG	0.544068	1:-33015069	None:intergenic
TGAGTTGGCACATGGTGCCC+AGG	0.544147	1:-33016878	None:intergenic
GTTGTTAGCCACAGTGGAAG+GGG	0.545341	1:-33016906	None:intergenic
ATCCCTCAATCGGATGATCA+AGG	0.545906	1:+33015026	MsaT002142.1:CDS
TTCGAGAAACTTATGATAGT+CGG	0.546362	1:-33014985	None:intergenic
TCAACTCTGGCTTCATCAGA+AGG	0.547608	1:-33015056	None:intergenic
CTTTGTTTGCAATCGCGTGG+TGG	0.550397	1:+33015546	MsaT002142.1:CDS
TCATCAGAAGGAACCTCTTG+AGG	0.553244	1:-33015089	None:intergenic
TAAGAAGGGTGGCTCTAAAA+GGG	0.555483	1:+33016967	MsaT002142.1:CDS
GCAGACTCCTGCATGGTCAT+GGG	0.561161	1:-33015579	None:intergenic
TCAACCCTGCCTTCATCAGA+AGG	0.569263	1:-33015101	None:intergenic
ATAATATTTCACCTTCTCAC+CGG	0.569829	1:+33016326	MsaT002142.1:CDS
GCAAACAAAGCCGCAAAGCA+TGG	0.573484	1:-33015533	None:intergenic
TGATGACGACGCAATTCCCT+CGG	0.574197	1:-33014955	None:intergenic
TTGGGGTTCTAAATCGTCCA+TGG	0.576660	1:-33014796	None:intergenic
TCAATCTCTGAGAGAGGCGA+GGG	0.577892	1:-33014912	None:intergenic
TGTTGTTAGCCACAGTGGAA+GGG	0.582265	1:-33016907	None:intergenic
CTCAATCTCTGAGAGAGGCG+AGG	0.584965	1:-33014913	None:intergenic
GGTTCAGGAGGAACCTCTTG+AGG	0.589392	1:-33015134	None:intergenic
CAATAACTATGGTGATAGAC+CGG	0.591350	1:-33016345	None:intergenic
GTTACCTCCAAGAGAAAACA+TGG	0.596124	1:+33016932	MsaT002142.1:CDS
GGTTCCTTCTGATGAAGGCA+GGG	0.598695	1:+33015097	MsaT002142.1:CDS
TGATCCAGTAACTCCTCAAG+AGG	0.602779	1:+33015076	MsaT002142.1:CDS
ACAATCACAAAACCACCTGT+TGG	0.603331	1:+33016515	MsaT002142.1:CDS
GTGGAAGGGGTAGACTGAGT+TGG	0.606292	1:-33016893	None:intergenic
CGGCTTTGTTTGCAATCGCG+TGG	0.608761	1:+33015543	MsaT002142.1:CDS
GTGTCTGCGACGGAAACAGA+AGG	0.621465	1:-33014888	None:intergenic
CTTCTCATGTCTGATGCCGA+GGG	0.622387	1:+33014939	MsaT002142.1:CDS
GGGTAGACTGAGTTGGCACA+TGG	0.627667	1:-33016886	None:intergenic
AACACTGTTGTTAGCCACAG+TGG	0.628137	1:-33016912	None:intergenic
AGGCGAGGGAGTGTCTGCGA+CGG	0.634385	1:-33014898	None:intergenic
CCAAAATAAAAGGCTACAGG+AGG	0.635451	1:-33016560	None:intergenic
TGATCCAGTAACTCCTCAAG+AGG	0.636811	1:+33015121	MsaT002142.1:CDS
AGATTCTCAATCTCTGAGAG+AGG	0.640144	1:-33014918	None:intergenic
ATGGTGATAGACCGGTGAGA+AGG	0.641259	1:-33016337	None:intergenic
CTGCTGTGAAATCAAGAGAG+AGG	0.642211	1:+33015412	MsaT002142.1:CDS
AGAGATTCGAAATCGATTTG+GGG	0.646761	1:-33014813	None:intergenic
AAAACCTTGAAACGAAGAGT+AGG	0.647793	1:+33015451	MsaT002142.1:CDS
TAGCAGGGAACCCAGCAGCA+GGG	0.658619	1:-33016850	None:intergenic
GGAACACAAAGGTCTAAGAA+GGG	0.664648	1:+33016953	MsaT002142.1:CDS
ACACAAAGGTCTAAGAAGGG+TGG	0.678689	1:+33016956	MsaT002142.1:CDS
TTCTGACAAAGACCAACAGG+TGG	0.685708	1:-33016527	None:intergenic
GAGCACAGCAGACTCCTGCA+TGG	0.688063	1:-33015586	None:intergenic
GGTGCCCAGGAACCATAGCA+GGG	0.695738	1:-33016865	None:intergenic
AGAGAAAACATGGAACACAA+AGG	0.721160	1:+33016942	MsaT002142.1:CDS
TCAGTCTACCCCTTCCACTG+TGG	0.742334	1:+33016898	MsaT002142.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	33014798	33017000	33014798	ID=MsaG002142
Chr1	mRNA	33014798	33017000	33014798	ID=MsaT002142.1;Parent=MsaG002142
Chr1	exon	33014798	33015177	33014798	ID=MsaT002142.1.exon1;Parent=MsaT002142.1
Chr1	CDS	33014798	33015177	33014798	ID=cds.MsaT002142.1;Parent=MsaT002142.1
Chr1	exon	33015392	33015615	33015392	ID=MsaT002142.1.exon2;Parent=MsaT002142.1
Chr1	CDS	33015392	33015615	33015392	ID=cds.MsaT002142.1;Parent=MsaT002142.1
Chr1	exon	33016293	33016375	33016293	ID=MsaT002142.1.exon3;Parent=MsaT002142.1
Chr1	CDS	33016293	33016375	33016293	ID=cds.MsaT002142.1;Parent=MsaT002142.1
Chr1	exon	33016464	33016606	33016464	ID=MsaT002142.1.exon4;Parent=MsaT002142.1
Chr1	CDS	33016464	33016606	33016464	ID=cds.MsaT002142.1;Parent=MsaT002142.1
Chr1	exon	33016847	33017000	33016847	ID=MsaT002142.1.exon5;Parent=MsaT002142.1
Chr1	CDS	33016847	33017000	33016847	ID=cds.MsaT002142.1;Parent=MsaT002142.1

Gene Sequence

>MsaT002142.1

ATGGACGATTTAGAACCCCAAATCGATTTCGAATCTCTCTTCGCAGAATACGAAGTCGCCGATTTTTTGCAGGAGGATGAGGATATCAATCCTTCTGTTTCCGTCGCAGACACTCCCTCGCCTCTCTCAGAGATTGAGAATCTTCTCATGTCTGATGCCGAGGGAATTGCGTCGTCATCATCGGATTCCGACTATCATAAGTTTCTCGAAGATATTCTCCTCGACCCAATCCCTCAATCGGATGATCAAGGTTTCGTTCCTTCTGATGAAGCCAGAGTTGATCCAGTAACTCCTCAAGAGGTTCCTTCTGATGAAGGCAGGGTTGATCCAGTAACTCCTCAAGAGGTTCCTCCTGAACCCGTTTCAAAAAAGCAAATTAGGCAGATGAGGAATAGGGATGCTGCTGTGAAATCAAGAGAGAGGAAGAAGATGTATGTGAAAAACCTTGAAACGAAGAGTAGGTATTTTGAAGGGGAATGCAGAAGATTGGAGCATTTGCTTCAATGCTGCTATGCTGAGAACCATGCTTTGCGGCTTTGTTTGCAATCGCGTGGTGGCTTTGGTGCTCCCATGACCATGCAGGAGTCTGCTGTGCTCTTGTTGGTGTTCAGGCATCTCATTCTGTCTCATTCAAGCTATAATATTTCACCTTCTCACCGGTCTATCACCATAGTTATTGAGCTTTATGTTTTTGCATCTAAATGGAAAAAATTTGTGTGGGTTGTATGGATAATAATAACAATCACAAAACCACCTGTTGGTCTTTGTCAGAATGAAAGTCTACCTCCTGTAGCCTTTTATTTTGGTCCAAAGGTGAACATCCTTTTGCTAATCCCTGCTGCTGGGTTCCCTGCTATGGTTCCTGGGCACCATGTGCCAACTCAGTCTACCCCTTCCACTGTGGCTAACAACAGTGTTACCTCCAAGAGAAAACATGGAACACAAAGGTCTAAGAAGGGTGGCTCTAAAAGGGCCAAACAGTAA

Protein sequence

>MsaT002142.1

MDDLEPQIDFESLFAEYEVADFLQEDEDINPSVSVADTPSPLSEIENLLMSDAEGIASSSSDSDYHKFLEDILLDPIPQSDDQGFVPSDEARVDPVTPQEVPSDEGRVDPVTPQEVPPEPVSKKQIRQMRNRDAAVKSRERKKMYVKNLETKSRYFEGECRRLEHLLQCCYAENHALRLCLQSRGGFGAPMTMQESAVLLLVFRHLILSHSSYNISPSHRSITIVIELYVFASKWKKFVWVVWIIITITKPPVGLCQNESLPPVAFYFGPKVNILLLIPAAGFPAMVPGHHVPTQSTPSTVANNSVTSKRKHGTQRSKKGGSKRAKQ*