AlfalfaGEDB | MsaG002161

M. sativa ssp. caerulea / MsaG002161

KEGG: K14510
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF14381.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002161	XP_024631703.1	97.269	659	12	1	1	659	1	653	0.0	1318

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002161	sp\|Q05609\|CTR1_ARATH	57.054	645	240	9	37	659	161	790	0.0	662

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002161	tr\|A0A396JW60\|A0A396JW60_MEDTR	97.269	659	12	1	1	659	1	653	0.0	1318

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002161	MtrunA17_Chr1g0171451	97.269	659	12	1	1	659	1	653	0.0	1318
MsaG002161	MtrunA17_Chr1g0179331	54.185	681	245	8	32	659	128	794	0.0	686
MsaG002161	MtrunA17_Chr5g0427651	43.396	689	299	16	35	658	222	884	1.23e-170	511
MsaG002161	MtrunA17_Chr3g0132791	61.069	262	102	0	397	658	630	891	2.59e-107	346
MsaG002161	MtrunA17_Chr3g0132791	38.978	313	161	7	19	326	179	466	6.48e-52	193
MsaG002161	MtrunA17_Chr8g0392871	54.795	292	118	3	371	659	696	976	1.47e-100	330
MsaG002161	MtrunA17_Chr8g0392871	30.769	286	168	7	40	315	102	367	1.72e-27	119
MsaG002161	MtrunA17_Chr6g0482711	60.081	248	97	1	412	659	652	897	4.62e-100	327
MsaG002161	MtrunA17_Chr6g0482711	31.469	286	166	7	40	315	101	366	8.14e-28	119
MsaG002161	MtrunA17_Chr1g0191171	60.558	251	97	1	407	657	676	924	1.19e-99	327

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002161	AT5G03730.2	57.054	645	240	9	37	659	161	790	0.0	662
MsaG002161	AT5G03730.1	57.054	645	240	9	37	659	161	790	0.0	662
MsaG002161	AT4G24480.2	42.120	717	321	14	10	658	217	907	1.31e-172	518
MsaG002161	AT4G24480.1	41.828	722	321	15	10	658	217	912	3.90e-170	511
MsaG002161	AT4G24480.3	41.365	718	325	16	10	658	217	907	5.01e-164	495
MsaG002161	AT1G08720.2	59.684	253	100	1	407	659	656	906	2.29e-99	325
MsaG002161	AT1G08720.2	32.680	306	176	8	41	336	76	361	1.96e-33	137
MsaG002161	AT1G73660.1	57.042	284	115	3	377	659	708	985	3.60e-99	327
MsaG002161	AT1G73660.1	34.466	206	120	2	105	303	191	388	4.58e-26	114
MsaG002161	AT1G08720.1	59.684	253	100	1	407	659	656	906	4.05e-99	325

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Find 157 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACCATTTACCTGCTC+AGG	0.460076	1:-33278479	None:intergenic
AAACTCTAAATCAGCCTGAA+TGG	0.449450	1:+33290916	MsaT002161.1:intron
AAATCTCTATGAACAATGGG+AGG	0.607990	1:-33286290	None:intergenic
AAATCTTGTTTGTAGTAGGA+TGG	0.484748	1:+33278766	MsaT002161.1:CDS
AAATGCGATGTATTCAGCTT+TGG	0.489589	1:+33290978	MsaT002161.1:CDS
AAATTTAGGTGTGCGCTGGA+AGG	0.574722	1:+33278899	MsaT002161.1:CDS
AACCGGTGTGAAAGTGATTG+AGG	0.529537	1:-33277823	None:intergenic
AAGTATTGTAGAAAGGACAC+GGG	0.702089	1:+33279341	MsaT002161.1:CDS
AATCTTGTTTGTAGTAGGAT+GGG	0.552756	1:+33278767	MsaT002161.1:CDS
AATGGCCCAATTGTATTTCT+TGG	0.265818	1:+33281331	MsaT002161.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	33277565	33294191	33277565	ID=MsaG002161
Chr1	mRNA	33277565	33294191	33277565	ID=MsaT002161.1;Parent=MsaG002161
Chr1	exon	33277565	33277842	33277565	ID=MsaT002161.1.exon1;Parent=MsaT002161.1
Chr1	CDS	33277565	33277842	33277565	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33278463	33278789	33278463	ID=MsaT002161.1.exon2;Parent=MsaT002161.1
Chr1	CDS	33278463	33278789	33278463	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33278878	33279019	33278878	ID=MsaT002161.1.exon3;Parent=MsaT002161.1
Chr1	CDS	33278878	33279019	33278878	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33279293	33279396	33279293	ID=MsaT002161.1.exon4;Parent=MsaT002161.1
Chr1	CDS	33279293	33279396	33279293	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33281187	33281392	33281187	ID=MsaT002161.1.exon5;Parent=MsaT002161.1
Chr1	CDS	33281187	33281392	33281187	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33282979	33283065	33282979	ID=MsaT002161.1.exon6;Parent=MsaT002161.1
Chr1	CDS	33282979	33283065	33282979	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33283250	33283390	33283250	ID=MsaT002161.1.exon7;Parent=MsaT002161.1
Chr1	CDS	33283250	33283390	33283250	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33283517	33283557	33283517	ID=MsaT002161.1.exon8;Parent=MsaT002161.1
Chr1	CDS	33283517	33283557	33283517	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33285645	33285713	33285645	ID=MsaT002161.1.exon9;Parent=MsaT002161.1
Chr1	CDS	33285645	33285713	33285645	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33285864	33285964	33285864	ID=MsaT002161.1.exon10;Parent=MsaT002161.1
Chr1	CDS	33285864	33285964	33285864	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33286063	33286147	33286063	ID=MsaT002161.1.exon11;Parent=MsaT002161.1
Chr1	CDS	33286063	33286147	33286063	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33286257	33286355	33286257	ID=MsaT002161.1.exon12;Parent=MsaT002161.1
Chr1	CDS	33286257	33286355	33286257	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33290763	33290831	33290763	ID=MsaT002161.1.exon13;Parent=MsaT002161.1
Chr1	CDS	33290763	33290831	33290763	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33290930	33291061	33290930	ID=MsaT002161.1.exon14;Parent=MsaT002161.1
Chr1	CDS	33290930	33291061	33290930	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33292715	33292809	33292715	ID=MsaT002161.1.exon15;Parent=MsaT002161.1
Chr1	CDS	33292715	33292809	33292715	ID=cds.MsaT002161.1;Parent=MsaT002161.1
Chr1	exon	33294173	33294191	33294173	ID=MsaT002161.1.exon16;Parent=MsaT002161.1
Chr1	CDS	33294173	33294191	33294173	ID=cds.MsaT002161.1;Parent=MsaT002161.1

Gene Sequence

>MsaT002161.1

ATGTACGGCGGAGGTGAGCGTGAGTGCGAATCTGAGAGCACGATGATGATTATGCAGAACGACGAAGATGAAGAAGACGAAGAAGGTTCTTCTTCTTCTTTCAAGAGCTGGGCAAAGCAAACAGAAGAGAGCTATCAATTGCAGCTCGCACTTGCTCTTCGCATTTCATCTCACTCTGCTTCTTCCGCTCAATCCAATCGCTTCTTGGATTTGGAACCTACCTCCTCTCCTTCTCCTTCTTCTTCTTCTTCCGATTCCCCTCAATCACTTTCACACCGGTGTTCATTAATCTTTCCTGAGCAGGTAAATGGTTGTTTGCAATACTCTGACAAAGTTCTAGACGGATTTTACCTAATTCATGGGATGGATGCATATACATGGACTATAAGTACCGATATGCAGAATGTTGGTATGATTCCATCATTTGAATCACTAATGTCGGTTAAACCGTGTGATAACTCGTCAGTTGTAGTGGTTGCTATTGACAAATCTAGAGACCCTGCCTTGAGAGAACTGCTACATGGGGTATTAAGTCTTTCAAGTAACTGGATTACCATCAAAGATGCAACTGATCAGCTTGCAAATCTTGTTTGTAGTAGGATGGGGGGAGGATCTTCCGACGAGGAAAATTTAGGTGTGCGCTGGAAGGAATGCTCTGATATTCTTAAAAGCTGTCTGCAGTGTATCATTCTTCCAATTGGAAGCTTACCCGTTGGCCTTTGTGTCCATCGAGCATTGCTCTTTAAAGTGTTAGCGGATTTAATCAACCTACCGTGTCGAATCGCTAAGGGATGCAAGTATTGTAGAAAGGACACGGGTGCTTCTTGTATAGTGCAATTTGGTTCTGACAGGGAGTATATGATTGATTTAGTAGGAAGGCCCGGGGATACATGCCAACCTGATTCTTCAGTGAATTCTGCATCTTCGATGTTGATCCCTTCACCATTATGTCATCCAAGGTTCAAGCCAGTTGAAACAGCTGAATATACAAAGACAATGGCCCAATTGTATTTCTTGGACAATCAAGCACTGCATCTTGTGTTTGAGACCACGTCAGGAGGTACTGTTGATTGTAGGGACAAAGTGGATCTTCAGCAAACTGAAATGTTTGGTGCAAACTATGCTGTTGGGAACAACCATATAGGTCCTGGTACCGAGGAACATGTGTCTTTCAATGAAGCAAACCAATCAGTAGTGAATTATTCGAGTCATGAAGTTGACCTTGAGGAGGAGGATCTGGACATTCCGTGGAGTGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTTGGAACTGTACTTCGTGCGGACTGGCGTGGCTCTGATGTTGCTGTGAAGATACTTAAGGTGCAAGGTTTTGATTCCGAACGATTTGAAGAGTTTCTAAAGGAGGTCACACTCATGAAGCGTCTACGTCATCCAAACATTGTACTTCTAATGGGCGCTGTTATCCAACCACCAAAATTATCAATAGTAACAGAATATTTATCAAGAGGAAGCTTGTATGAACTTCTGCAGATGCCAGGTGTTGGTTCCTCAATCAGTGAGAAGCGTCGTTTAAGTATGGCATATGACGTGGCAAGTGGAATGAATTATCTTCATCAAATGAAACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTATGTGACTTTGGCCTTTCACGTACAAAGGCAAATACATATCTTTCATCTAAAACAGCTGCTGGAACTCCTGAATGGATGGCACCAGAAGTCATCAAAGGTGAACTATCAAATGAAAAATGCGATGTATTCAGCTTTGGTGTAATCTTGTGGGAACTGGTGACCCTTCAACAACCATGGAGGCAGTTAAATCCTTCACAGGTTGTTGCAGCTGTTGGTTTTATGGGCAAAAGGCTAGAAATTCCGAGGCATGTGAATCCTCAAGTGGCTGCCTTAATTGAGCTCTGCTGGTCTACAATCTTGCTGAAGAGCTGA

Protein sequence

>MsaT002161.1

MYGGGERECESESTMMIMQNDEDEEDEEGSSSSFKSWAKQTEESYQLQLALALRISSHSASSAQSNRFLDLEPTSSPSPSSSSSDSPQSLSHRCSLIFPEQVNGCLQYSDKVLDGFYLIHGMDAYTWTISTDMQNVGMIPSFESLMSVKPCDNSSVVVVAIDKSRDPALRELLHGVLSLSSNWITIKDATDQLANLVCSRMGGGSSDEENLGVRWKECSDILKSCLQCIILPIGSLPVGLCVHRALLFKVLADLINLPCRIAKGCKYCRKDTGASCIVQFGSDREYMIDLVGRPGDTCQPDSSVNSASSMLIPSPLCHPRFKPVETAEYTKTMAQLYFLDNQALHLVFETTSGGTVDCRDKVDLQQTEMFGANYAVGNNHIGPGTEEHVSFNEANQSVVNYSSHEVDLEEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDSERFEEFLKEVTLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLQMPGVGSSISEKRRLSMAYDVASGMNYLHQMKPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTYLSSKTAAGTPEWMAPEVIKGELSNEKCDVFSFGVILWELVTLQQPWRQLNPSQVVAAVGFMGKRLEIPRHVNPQVAALIELCWSTILLKS*