AlfalfaGEDB | MsaG002169

M. sativa ssp. caerulea / MsaG002169

KEGG: K17506
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002169	XP_003590246.1	94.228	641	35	2	16	656	16	654	0.0	1242

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002169	sp\|Q940A2\|P2C31_ARATH	62.906	647	231	5	16	656	15	658	0.0	845

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002169	tr\|G7I7C7\|G7I7C7_MEDTR	94.228	641	35	2	16	656	16	654	0.0	1242

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002169	MtrunA17_Chr1g0171571	94.228	641	35	2	16	656	16	654	0.0	1242
MsaG002169	MtrunA17_Chr1g0150451	41.860	258	137	6	388	644	76	321	2.53e-50	178
MsaG002169	MtrunA17_Chr3g0136711	40.449	267	145	7	388	652	33	287	1.24e-48	172
MsaG002169	MtrunA17_Chr3g0126511	39.147	258	144	6	388	644	93	338	4.77e-42	156
MsaG002169	MtrunA17_Chr4g0065141	31.214	346	182	9	342	644	16	348	1.09e-41	155
MsaG002169	MtrunA17_Chr1g0212961	37.023	262	148	6	388	648	94	339	3.44e-41	153
MsaG002169	MtrunA17_Chr3g0138281	36.042	283	147	9	382	644	75	343	1.28e-40	152
MsaG002169	MtrunA17_Chr3g0117731	34.375	288	144	8	41	319	65	316	5.07e-39	147
MsaG002169	MtrunA17_Chr5g0430481	33.840	263	152	5	393	647	127	375	9.41e-38	144
MsaG002169	MtrunA17_Chr3g0136131	31.699	306	148	8	33	314	87	355	6.61e-37	141

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002169	AT2G40860.1	62.906	647	231	5	16	656	15	658	0.0	845
MsaG002169	AT2G40860.2	61.699	624	230	5	16	633	15	635	0.0	802
MsaG002169	AT2G40860.4	64.706	561	191	3	102	656	1	560	0.0	760
MsaG002169	AT2G40860.3	60.616	584	221	5	16	593	15	595	0.0	740
MsaG002169	AT4G31750.2	40.698	258	140	6	388	644	32	277	3.09e-48	172
MsaG002169	AT4G31750.1	40.698	258	140	6	388	644	32	277	4.22e-48	171
MsaG002169	AT4G31750.3	40.698	258	140	6	388	644	32	277	4.22e-48	171
MsaG002169	AT5G24940.1	40.230	261	142	6	388	646	32	280	1.06e-46	171
MsaG002169	AT5G10740.1	40.310	258	141	5	388	644	32	277	1.40e-45	166
MsaG002169	AT5G10740.2	40.310	258	141	5	388	644	32	277	1.40e-45	166

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Find 153 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATGCAGTTGTTGTA+AGG	0.384087	1:+33366037	None:intergenic
AAACCAAAATCTGTGAGGTG+TGG	0.620524	1:+33357538	None:intergenic
AAAGCAATTGTAATTGTTTG+TGG	0.383470	1:+33360684	None:intergenic
AAATTATGCAGTTGTTGTAA+GGG	0.565916	1:+33366038	None:intergenic
AAATTCATCCTCTGCATGTA+AGG	0.433579	1:+33352932	None:intergenic
AACAAACCTGAAGCGCAGGA+AGG	0.637194	1:+33353671	None:intergenic
AACCAGGATGCCAATCCTTC+TGG	0.374377	1:+33353999	None:intergenic
AACCTGATTGGCTACGTGGC+TGG	0.432444	1:+33365966	None:intergenic
AACTCCTCGCTGGCAAGGAC+CGG	0.474157	1:+33355508	None:intergenic
AAGCGCGTCATTGACGGTTG+GGG	0.536439	1:+33358641	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	33352330	33366547	33352330	ID=MsaG002169
Chr1	mRNA	33352330	33366547	33352330	ID=MsaT002169.1;Parent=MsaG002169
Chr1	exon	33352330	33352524	33352330	ID=MsaT002169.1.exon13;Parent=MsaT002169.1
Chr1	CDS	33352330	33352524	33352330	ID=cds.MsaT002169.1;Parent=MsaT002169.1
Chr1	exon	33352929	33353024	33352929	ID=MsaT002169.1.exon12;Parent=MsaT002169.1
Chr1	CDS	33352929	33353024	33352929	ID=cds.MsaT002169.1;Parent=MsaT002169.1
Chr1	exon	33353678	33353782	33353678	ID=MsaT002169.1.exon11;Parent=MsaT002169.1
Chr1	CDS	33353678	33353782	33353678	ID=cds.MsaT002169.1;Parent=MsaT002169.1
Chr1	exon	33353892	33354111	33353892	ID=MsaT002169.1.exon10;Parent=MsaT002169.1
Chr1	CDS	33353892	33354111	33353892	ID=cds.MsaT002169.1;Parent=MsaT002169.1
Chr1	exon	33354205	33354274	33354205	ID=MsaT002169.1.exon9;Parent=MsaT002169.1
Chr1	CDS	33354205	33354274	33354205	ID=cds.MsaT002169.1;Parent=MsaT002169.1
Chr1	exon	33355071	33355602	33355071	ID=MsaT002169.1.exon8;Parent=MsaT002169.1
Chr1	CDS	33355071	33355602	33355071	ID=cds.MsaT002169.1;Parent=MsaT002169.1
Chr1	exon	33356280	33356331	33356280	ID=MsaT002169.1.exon7;Parent=MsaT002169.1
Chr1	CDS	33356280	33356331	33356280	ID=cds.MsaT002169.1;Parent=MsaT002169.1
Chr1	exon	33357355	33357578	33357355	ID=MsaT002169.1.exon6;Parent=MsaT002169.1
Chr1	CDS	33357355	33357578	33357355	ID=cds.MsaT002169.1;Parent=MsaT002169.1
Chr1	exon	33357692	33357759	33357692	ID=MsaT002169.1.exon5;Parent=MsaT002169.1
Chr1	CDS	33357692	33357759	33357692	ID=cds.MsaT002169.1;Parent=MsaT002169.1
Chr1	exon	33358622	33358788	33358622	ID=MsaT002169.1.exon4;Parent=MsaT002169.1
Chr1	CDS	33358622	33358788	33358622	ID=cds.MsaT002169.1;Parent=MsaT002169.1
Chr1	exon	33360683	33360800	33360683	ID=MsaT002169.1.exon3;Parent=MsaT002169.1
Chr1	CDS	33360683	33360800	33360683	ID=cds.MsaT002169.1;Parent=MsaT002169.1
Chr1	exon	33365969	33366074	33365969	ID=MsaT002169.1.exon2;Parent=MsaT002169.1
Chr1	CDS	33365969	33366074	33365969	ID=cds.MsaT002169.1;Parent=MsaT002169.1
Chr1	exon	33366530	33366547	33366530	ID=MsaT002169.1.exon1;Parent=MsaT002169.1
Chr1	CDS	33366530	33366547	33366530	ID=cds.MsaT002169.1;Parent=MsaT002169.1

Gene Sequence

>MsaT002169.1

ATGACAGCGAACTCGAAGCAGGATTCACGTGTCCCTTACAACAACTGCATAATTTTTCAATCCCTTCCATTACCGCCATTCCAAACGGCGGGAATGCTCAGATTCCAGCCACGTAGCCAATCAGGTGCTGAAAGTGTTGTTTATGAAGGCACTTTGAATGGAGACAAAGTTGCTGTTAAGAAACCCATTTTGTCTCTTTCTCAACACATCAATGACTTCCACAAACAATTACAATTGCTTTGCAAGCTAGATCACCCGGGAATAGCAACACTAATTGCCGCCCATGCAAAACCACCCAATTATATGTTTTTCTTCAAGTTATATGAGTCTTCCAATCTCGGCCACAAGTTACATGTGGAAGAATGGGCCCCAACCGTCAATGACGCGCTTATGATAACAATGCAGTTAGCAAAGGCCTTGCAATATCTGCATAACCTCGGGATTCTGCATAGAGATGTGAAACCTGCAAATATTCTTCTTGACATAAATCTCTGTCCACACCTCACAGATTTTGGTTTGGCTGAATACAAGAGTGATATTAAGGGAGTTTCTCTTGAGAATTGGAAGTCTTCTGGAAAACCTACTGGTGGTTTTCACAAAAAGAATATGGTTGGAACACTTGTTTATATGGCACCTGAAATATTAAGAAAGGAATTACACTCAGAAAAGTCAGATGTATACAGTTTTGGGATATCAATCAATGAACTCCTTACTGGTGTTGTGCCATATACTGATCTTCGTGCAGAAGCACAGGCTCACACGGTACTTGAGATGAACTATACTGAGCAACAACTAACAGCAGCTGTTGTTTCCGATGGATTACGACCGGTCCTTGCCAGCGAGGAGTTGGGTATACCATCAAGATTAGTATCGATGATACGAAAGTGCTGGGATGCTAATCCTAAAAGTAGACCTTCCTTTGATGAGATTGTCAAGGAACTTGATTTTATTATGGAACACAGGAAAGTAAAGAAGGTGGAAGATATGCATATTAGACCTTGTAACTTGCCTGTTGACCAACTTGTGGACAAGACTTATCAAGAGAGTATTAGCTGGTCTGCTCAAGGAGAGCTTTTGGCCAGGAATATCTCTAGCTCAACTGATTCTGGTTTAAGAACATGGTCCAAGTCTTACAACGAGCCTTCTGCATACCGTCCAGTACTGTCTTGCGGATCTTATGCTACTTGTGGGAGACGGGAGGCTATGGAGGACACACATTTCATTCTGCCCCATGTTTTCAATGAAAAGGATGTCTATGCTTTTGGTATCTTTGATGGCCATAGAGGCGCAGCAGCTGCGGAGTTTTCTTCTAGGGCTGTACCTGCAGTTTTGCAAACTCTTGGTTTTACGGGCAGTCCTGCTAATGCACTAGTGGAAGCATTCCTTAGAACAGATACTGCCTTCAGAAAAGAGCTTGCTTCCTATCGCAAATCCAACAGATGTATCCAGAAGGATTGGCATCCTGGTTGTACAGCAATTGCTGCTATTGTAAGTGGGAACAAGCTATTTGTTGCTAATAGTGGTGATTGTCGGGCAATCTTATGTCGTGCTGGTAATCCCATTGCTCTGAGTAAGGATCATGTTGCAAGCTGTCTTCAAGAGAGAGAGCGTGTTATTCGTCAAGGGGGACAAGTTCATTGGCAAGTTGATACCTGGAGAGTTGGCCTTCCTGCGCTTCAGGTTACTCGTTCTATCGGTGACGATGACCTGAAGCCTGCTGTAACTGCAGAACCTGAGATAACTGAGAACACCTTACATGCAGAGGATGAATTTCTGGTCATGGCTAGCGATGGTCTGTGGGATGTGATGAGCAGTTTGGATGTGATAAATATAATAAAGGACACAGTTAAAGAGGCAGGCATGTGCTCTAAGAGGTTGGCTACTGAAGCTGCGGAACGTGGCAGCAAGGATAACATTACAGTTATTGTCGTTTTTCTAAGACCTGTATCAACGGCAGAGAGAATTTATTAG

Protein sequence

>MsaT002169.1

MTANSKQDSRVPYNNCIIFQSLPLPPFQTAGMLRFQPRSQSGAESVVYEGTLNGDKVAVKKPILSLSQHINDFHKQLQLLCKLDHPGIATLIAAHAKPPNYMFFFKLYESSNLGHKLHVEEWAPTVNDALMITMQLAKALQYLHNLGILHRDVKPANILLDINLCPHLTDFGLAEYKSDIKGVSLENWKSSGKPTGGFHKKNMVGTLVYMAPEILRKELHSEKSDVYSFGISINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQLTAAVVSDGLRPVLASEELGIPSRLVSMIRKCWDANPKSRPSFDEIVKELDFIMEHRKVKKVEDMHIRPCNLPVDQLVDKTYQESISWSAQGELLARNISSSTDSGLRTWSKSYNEPSAYRPVLSCGSYATCGRREAMEDTHFILPHVFNEKDVYAFGIFDGHRGAAAAEFSSRAVPAVLQTLGFTGSPANALVEAFLRTDTAFRKELASYRKSNRCIQKDWHPGCTAIAAIVSGNKLFVANSGDCRAILCRAGNPIALSKDHVASCLQERERVIRQGGQVHWQVDTWRVGLPALQVTRSIGDDDLKPAVTAEPEITENTLHAEDEFLVMASDGLWDVMSSLDVINIIKDTVKEAGMCSKRLATEAAERGSKDNITVIVVFLRPVSTAERIY*