Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002177 | KEH40808.1 | 74.145 | 468 | 70 | 9 | 1 | 420 | 1 | 465 | 0.0 | 647 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002177 | sp|Q8L3W1|VRN1_ARATH | 25.225 | 333 | 184 | 9 | 7 | 277 | 4 | 333 | 4.34e-21 | 97.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002177 | tr|A0A072VHA4|A0A072VHA4_MEDTR | 74.145 | 468 | 70 | 9 | 1 | 420 | 1 | 465 | 0.0 | 647 |
Gene ID | Type | Classification |
---|---|---|
MsaG002177 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000640 | MsaG002177 | 0.800913 | 1.930284e-48 | 2.664126e-46 |
MsaG001178 | MsaG002177 | 0.818521 | 3.275714e-52 | 6.929817e-50 |
MsaG001179 | MsaG002177 | 0.809512 | 3.114607e-50 | 5.256719e-48 |
MsaG001237 | MsaG002177 | 0.806181 | 1.578729e-49 | 2.460536e-47 |
MsaG001531 | MsaG002177 | 0.805209 | 2.520104e-49 | 3.839244e-47 |
MsaG001727 | MsaG002177 | 0.824834 | 1.154366e-53 | 2.890689e-51 |
MsaG002177 | MsaG003083 | 0.818843 | 2.769687e-52 | 5.908863e-50 |
MsaG002177 | MsaG003276 | 0.812832 | 5.983681e-51 | 1.095449e-48 |
MsaG002177 | MsaG003394 | 0.806953 | 1.086941e-49 | 1.725160e-47 |
MsaG002177 | MsaG003468 | 0.807623 | 7.848224e-50 | 1.265660e-47 |
MsaG002177 | MsaG004282 | 0.816127 | 1.126097e-51 | 2.239920e-49 |
MsaG002177 | MsaG004576 | 0.807167 | 9.795697e-50 | 1.562658e-47 |
MsaG002177 | MsaG005839 | 0.846264 | 4.557049e-59 | 2.177381e-56 |
MsaG002177 | MsaG007428 | 0.809502 | 3.129658e-50 | 5.280987e-48 |
MsaG002177 | MsaG007666 | 0.822594 | 3.840991e-53 | 9.050970e-51 |
MsaG002177 | MsaG007775 | 0.809793 | 2.711505e-50 | 4.607560e-48 |
MsaG002177 | MsaG008101 | 0.805843 | 1.857837e-49 | 2.872509e-47 |
MsaG002177 | MsaG008538 | 0.805121 | 2.628168e-49 | 3.995731e-47 |
MsaG002177 | MsaG008584 | 0.801194 | 1.692150e-48 | 2.350368e-46 |
MsaG002177 | MsaG010095 | 0.839094 | 3.584834e-57 | 1.360338e-54 |
MsaG002177 | MsaG011598 | 0.806132 | 1.616408e-49 | 2.516327e-47 |
MsaG002177 | MsaG011646 | 0.815970 | 1.219870e-51 | 2.416832e-49 |
MsaG002177 | MsaG012424 | 0.807942 | 6.720466e-50 | 1.092160e-47 |
MsaG002177 | MsaG012931 | 0.801387 | 1.545786e-48 | 2.156494e-46 |
MsaG002177 | MsaG012941 | 0.812340 | 7.653203e-51 | 1.384091e-48 |
MsaG002177 | MsaG012942 | 0.809026 | 3.954119e-50 | 6.595768e-48 |
MsaG002177 | MsaG012943 | 0.823171 | 2.822098e-53 | 6.754513e-51 |
MsaG002177 | MsaG013646 | 0.809708 | 2.828568e-50 | 4.796419e-48 |
MsaG002177 | MsaG013657 | 0.843913 | 1.953434e-58 | 8.637243e-56 |
MsaG002177 | MsaG014014 | 0.812860 | 5.900059e-51 | 1.080887e-48 |
MsaG002177 | MsaG014421 | 0.802214 | 1.047644e-48 | 1.489268e-46 |
MsaG002177 | MsaG014422 | 0.816828 | 7.858316e-52 | 1.591402e-49 |
MsaG002177 | MsaG014953 | 0.811724 | 1.041434e-50 | 1.855004e-48 |
MsaG002177 | MsaG016724 | 0.828694 | 1.396626e-54 | 3.894272e-52 |
MsaG002177 | MsaG017329 | 0.807794 | 7.223400e-50 | 1.169701e-47 |
MsaG002177 | MsaG018170 | 0.817280 | 6.224919e-52 | 1.275465e-49 |
MsaG002177 | MsaG018171 | 0.811757 | 1.024468e-50 | 1.826259e-48 |
MsaG002177 | MsaG018173 | 0.812355 | 7.596479e-51 | 1.374347e-48 |
MsaG002177 | MsaG018243 | 0.805550 | 2.139636e-49 | 3.285432e-47 |
MsaG002177 | MsaG018447 | 0.806216 | 1.552204e-49 | 2.421279e-47 |
MsaG002177 | MsaG018553 | 0.837284 | 1.043505e-56 | 3.743983e-54 |
MsaG002177 | MsaG019076 | 0.819012 | 2.536637e-52 | 5.435665e-50 |
MsaG002177 | MsaG020314 | 0.840869 | 1.241728e-57 | 4.981517e-55 |
MsaG002177 | MsaG020868 | 0.829126 | 1.098850e-54 | 3.101416e-52 |
MsaG002177 | MsaG021405 | 0.809332 | 3.402676e-50 | 5.717545e-48 |
MsaG002177 | MsaG021575 | 0.834678 | 4.748229e-56 | 1.575304e-53 |
MsaG002177 | MsaG021896 | 0.820196 | 1.365748e-52 | 3.019565e-50 |
MsaG002177 | MsaG023744 | 0.809918 | 2.550040e-50 | 4.346125e-48 |
MsaG002177 | MsaG024240 | 0.813439 | 4.409368e-51 | 8.195947e-49 |
MsaG002177 | MsaG026740 | 0.811196 | 1.354240e-50 | 2.381174e-48 |
MsaG002177 | MsaG027204 | 0.802217 | 1.045908e-48 | 1.486925e-46 |
MsaG002177 | MsaG028375 | 0.837859 | 7.443881e-57 | 2.718153e-54 |
MsaG002177 | MsaG030016 | 0.828438 | 1.609112e-54 | 4.454968e-52 |
MsaG002177 | MsaG031436 | 0.831886 | 2.338756e-55 | 7.147583e-53 |
MsaG002177 | MsaG033301 | 0.809257 | 3.529739e-50 | 5.920457e-48 |
MsaG002177 | MsaG034287 | 0.826394 | 4.947561e-54 | 1.293583e-51 |
MsaG002177 | MsaG034288 | 0.815142 | 1.860961e-51 | 3.610268e-49 |
MsaG002177 | MsaG035210 | 0.814000 | 3.321938e-51 | 6.262097e-49 |
MsaG002177 | MsaG035270 | 0.856600 | 5.602476e-62 | 3.836370e-59 |
MsaG002177 | MsaG035511 | 0.813030 | 5.417370e-51 | 9.967067e-49 |
MsaG002177 | MsaG039723 | 0.817569 | 5.363916e-52 | 1.107182e-49 |
MsaG002177 | MsaG039724 | 0.806183 | 1.577111e-49 | 2.458150e-47 |
MsaG002177 | MsaG039645 | 0.806300 | 1.490285e-49 | 2.329303e-47 |
MsaG002177 | MsaG039739 | 0.809979 | 2.474361e-50 | 4.223288e-48 |
MsaG002177 | MsaG040077 | 0.803829 | 4.873257e-49 | 7.190180e-47 |
MsaG002177 | MsaG040384 | 0.803292 | 6.288736e-49 | 9.164192e-47 |
MsaG002177 | MsaG040740 | 0.810167 | 2.254951e-50 | 3.866461e-48 |
MsaG002177 | MsaG040775 | 0.817954 | 4.395906e-52 | 9.164407e-50 |
MsaG002177 | MsaG040994 | 0.816290 | 1.035869e-51 | 2.069040e-49 |
MsaG002177 | MsaG043665 | 0.830462 | 5.214595e-55 | 1.529121e-52 |
MsaG002177 | MsaG044284 | 0.834585 | 5.009766e-56 | 1.657419e-53 |
MsaG002177 | MsaG044352 | 0.829423 | 9.316014e-55 | 2.651889e-52 |
MsaG002177 | MsaG044354 | 0.826769 | 4.030095e-54 | 1.064716e-51 |
MsaG002177 | MsaG044376 | 0.800346 | 2.515822e-48 | 3.428205e-46 |
MsaG002177 | MsaG044606 | 0.809570 | 3.026862e-50 | 5.115841e-48 |
MsaG002177 | MsaG045021 | 0.810441 | 1.969333e-50 | 3.399573e-48 |
MsaG002177 | MsaG045125 | 0.822005 | 5.255240e-53 | 1.218890e-50 |
MsaG002177 | MsaG045446 | 0.818528 | 3.262962e-52 | 6.904161e-50 |
MsaG002177 | MsaG045641 | 0.802345 | 9.848318e-49 | 1.404259e-46 |
MsaG002177 | MsaG046051 | 0.810613 | 1.808347e-50 | 3.134670e-48 |
MsaG002177 | MsaG046096 | 0.803733 | 5.101156e-49 | 7.509998e-47 |
MsaG002177 | MsaG046102 | 0.817931 | 4.447273e-52 | 9.266154e-50 |
MsaG002177 | MsaG046630 | 0.816891 | 7.608449e-52 | 1.543318e-49 |
MsaG002177 | MsaG046816 | 0.824281 | 1.555998e-53 | 3.837971e-51 |
MsaG002177 | MsaG008770 | 0.836420 | 1.729892e-56 | 6.046957e-54 |
MsaG002177 | MsaG014891 | 0.812985 | 5.540062e-51 | 1.018131e-48 |
MsaG002177 | MsaG016847 | 0.828878 | 1.260991e-54 | 3.534370e-52 |
MsaG002177 | MsaG020796 | 0.814638 | 2.405164e-51 | 4.607000e-49 |
MsaG002177 | MsaG027786 | 0.821498 | 6.875585e-53 | 1.573343e-50 |
MsaG002177 | MsaG031221 | 0.818966 | 2.597692e-52 | 5.559941e-50 |
MsaG002177 | MsaG033582 | 0.807197 | 9.654407e-50 | 1.541189e-47 |
MsaG002177 | MsaG039770 | 0.811043 | 1.461011e-50 | 2.559341e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002177 | MtrunA17_Chr1g0163251 | 81.299 | 385 | 52 | 6 | 1 | 368 | 1 | 382 | 0.0 | 610 |
MsaG002177 | MtrunA17_Chr1g0163181 | 56.208 | 443 | 158 | 7 | 1 | 420 | 1 | 430 | 6.67e-171 | 485 |
MsaG002177 | MtrunA17_Chr1g0163201 | 54.177 | 419 | 131 | 4 | 20 | 420 | 18 | 393 | 5.36e-147 | 423 |
MsaG002177 | MtrunA17_Chr1g0163261 | 51.171 | 299 | 133 | 4 | 1 | 291 | 1 | 294 | 1.85e-96 | 291 |
MsaG002177 | MtrunA17_Chr1g0163231 | 51.724 | 290 | 121 | 8 | 1 | 281 | 1 | 280 | 2.23e-92 | 280 |
MsaG002177 | MtrunA17_Chr1g0171611 | 53.287 | 289 | 106 | 7 | 1 | 281 | 1 | 268 | 1.71e-91 | 278 |
MsaG002177 | MtrunA17_Chr1g0163151 | 46.124 | 258 | 102 | 2 | 163 | 420 | 2 | 222 | 8.75e-75 | 233 |
MsaG002177 | MtrunA17_Chr1g0163111 | 46.091 | 243 | 107 | 5 | 179 | 420 | 10 | 229 | 1.27e-66 | 212 |
MsaG002177 | MtrunA17_Chr1g0163241 | 67.081 | 161 | 43 | 4 | 1 | 156 | 7 | 162 | 6.81e-62 | 197 |
MsaG002177 | MtrunA17_Chr1g0163191 | 63.924 | 158 | 43 | 1 | 1 | 144 | 1 | 158 | 1.38e-61 | 196 |
MsaG002177 | MtrunA17_Chr6g0476171 | 37.778 | 270 | 132 | 7 | 157 | 419 | 5 | 245 | 3.40e-43 | 151 |
MsaG002177 | MtrunA17_Chr1g0162151 | 37.255 | 255 | 109 | 4 | 164 | 418 | 3 | 206 | 5.56e-42 | 147 |
MsaG002177 | MtrunA17_Chr1g0163091 | 50.735 | 136 | 66 | 1 | 164 | 299 | 3 | 137 | 1.20e-39 | 139 |
MsaG002177 | MtrunA17_Chr8g0390841 | 27.766 | 479 | 262 | 17 | 14 | 418 | 48 | 516 | 2.25e-39 | 147 |
MsaG002177 | MtrunA17_Chr1g0208771 | 26.477 | 457 | 266 | 17 | 20 | 418 | 12 | 456 | 2.06e-35 | 135 |
MsaG002177 | MtrunA17_Chr7g0233561 | 31.457 | 302 | 166 | 11 | 9 | 278 | 18 | 310 | 1.50e-32 | 125 |
MsaG002177 | MtrunA17_Chr1g0163131 | 31.186 | 295 | 165 | 12 | 14 | 282 | 27 | 309 | 8.78e-32 | 122 |
MsaG002177 | MtrunA17_Chr1g0163131 | 51.948 | 77 | 33 | 2 | 345 | 419 | 232 | 306 | 3.35e-15 | 75.9 |
MsaG002177 | MtrunA17_Chr3g0103181 | 29.818 | 275 | 180 | 6 | 9 | 278 | 12 | 278 | 6.19e-31 | 119 |
MsaG002177 | MtrunA17_Chr3g0103171 | 28.464 | 267 | 176 | 6 | 20 | 278 | 5 | 264 | 1.12e-29 | 116 |
MsaG002177 | MtrunA17_Chr1g0163101 | 43.972 | 141 | 67 | 4 | 14 | 146 | 26 | 162 | 3.65e-29 | 112 |
MsaG002177 | MtrunA17_Chr7g0233521 | 32.014 | 278 | 167 | 9 | 21 | 286 | 2 | 269 | 1.62e-28 | 113 |
MsaG002177 | MtrunA17_Chr1g0162161 | 39.726 | 146 | 78 | 4 | 21 | 159 | 4 | 146 | 5.76e-27 | 105 |
MsaG002177 | MtrunA17_Chr1g0163221 | 28.383 | 303 | 177 | 13 | 9 | 285 | 11 | 299 | 1.34e-26 | 109 |
MsaG002177 | MtrunA17_Chr3g0131891 | 30.717 | 293 | 170 | 9 | 9 | 278 | 19 | 301 | 2.22e-26 | 108 |
MsaG002177 | MtrunA17_Chr6g0476181 | 45.070 | 142 | 69 | 4 | 21 | 159 | 2 | 137 | 2.32e-26 | 103 |
MsaG002177 | MtrunA17_Chr1g0163071 | 26.733 | 303 | 184 | 8 | 21 | 291 | 2 | 298 | 6.70e-26 | 106 |
MsaG002177 | MtrunA17_Chr4g0067431 | 28.819 | 288 | 174 | 10 | 9 | 268 | 15 | 299 | 8.25e-26 | 106 |
MsaG002177 | MtrunA17_Chr7g0233541 | 29.066 | 289 | 178 | 7 | 21 | 286 | 2 | 286 | 1.04e-25 | 105 |
MsaG002177 | MtrunA17_Chr1g0163121 | 39.568 | 139 | 77 | 3 | 19 | 157 | 9 | 140 | 3.50e-25 | 100 |
MsaG002177 | MtrunA17_Chr3g0103191 | 30.894 | 246 | 148 | 7 | 9 | 240 | 12 | 249 | 6.85e-24 | 99.8 |
MsaG002177 | MtrunA17_Chr1g0163081 | 49.438 | 89 | 44 | 1 | 21 | 109 | 6 | 93 | 1.63e-23 | 95.9 |
MsaG002177 | MtrunA17_Chr3g0103151 | 41.463 | 123 | 67 | 3 | 9 | 126 | 12 | 134 | 7.31e-23 | 94.4 |
MsaG002177 | MtrunA17_Chr1g0163141 | 37.500 | 152 | 83 | 3 | 17 | 160 | 7 | 154 | 3.62e-22 | 93.2 |
MsaG002177 | MtrunA17_Chr7g0233531 | 29.391 | 279 | 173 | 8 | 21 | 286 | 2 | 269 | 4.32e-22 | 95.5 |
MsaG002177 | MtrunA17_Chr5g0419201 | 35.664 | 143 | 80 | 3 | 14 | 144 | 25 | 167 | 1.20e-21 | 92.0 |
MsaG002177 | MtrunA17_Chr7g0233571 | 48.148 | 108 | 49 | 3 | 1 | 101 | 1 | 108 | 1.07e-20 | 90.1 |
MsaG002177 | MtrunA17_Chr1g0163161 | 38.346 | 133 | 70 | 4 | 33 | 157 | 1 | 129 | 9.53e-19 | 82.0 |
MsaG002177 | MtrunA17_Chr6g0467351 | 28.293 | 205 | 130 | 5 | 13 | 201 | 23 | 226 | 3.41e-18 | 83.2 |
MsaG002177 | MtrunA17_Chr4g0033961 | 36.634 | 101 | 58 | 2 | 7 | 101 | 4 | 104 | 8.27e-13 | 69.7 |
MsaG002177 | MtrunA17_Chr1g0154131 | 26.690 | 281 | 186 | 11 | 3 | 266 | 179 | 456 | 1.87e-11 | 65.9 |
MsaG002177 | MtrunA17_Chr5g0419211 | 33.333 | 99 | 64 | 2 | 199 | 296 | 8 | 105 | 2.93e-11 | 60.5 |
MsaG002177 | MtrunA17_Chr5g0429931 | 24.723 | 271 | 160 | 8 | 20 | 282 | 10 | 244 | 4.41e-11 | 62.8 |
MsaG002177 | MtrunA17_Chr1g0163061 | 35.000 | 100 | 58 | 3 | 9 | 101 | 15 | 114 | 4.50e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002177 | AT3G18990.1 | 25.225 | 333 | 184 | 9 | 7 | 277 | 4 | 333 | 4.42e-22 | 97.1 |
MsaG002177 | AT3G18990.2 | 25.225 | 333 | 184 | 9 | 7 | 277 | 4 | 333 | 5.70e-22 | 97.1 |
Find 71 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGTTCAACAAGAAATATTT+TGG | 0.149501 | 1:-33507646 | MsaT002177.1:CDS |
TAAAGGTTGGATAAAATTTA+TGG | 0.171908 | 1:-33503761 | MsaT002177.1:CDS |
TATTTCAAGGTTAAGATATT+TGG | 0.184615 | 1:-33507521 | MsaT002177.1:CDS |
TTTGGAAATTTAAGAAATAT+TGG | 0.199105 | 1:+33507671 | None:intergenic |
AAAGAAGGGATTCTCATTAT+TGG | 0.209323 | 1:+33507091 | None:intergenic |
TTTGCAAAGTCTCTCAAATA+TGG | 0.220809 | 1:-33507578 | MsaT002177.1:CDS |
CCCTGAAGAGCATGCACTTT+TGG | 0.222036 | 1:+33505943 | None:intergenic |
TCCAAAAGTGCATGCTCTTC+AGG | 0.235087 | 1:-33505944 | MsaT002177.1:CDS |
CTTAGGGTTTGGTCCCTTGA+TGG | 0.254887 | 1:+33506698 | None:intergenic |
GCATGCACCAAAGAGATTTA+TGG | 0.255225 | 1:-33503884 | MsaT002177.1:CDS |
ACACAATACATTCAAGGTTT+TGG | 0.281549 | 1:-33504023 | MsaT002177.1:CDS |
AGAAATATGTGGAGAAATAT+TGG | 0.283749 | 1:-33507709 | MsaT002177.1:CDS |
CCTCTTTCCATAAATCTCTT+TGG | 0.284821 | 1:+33503877 | None:intergenic |
CAATATTATCTTATGAAAAT+CGG | 0.286878 | 1:+33507863 | None:intergenic |
GAAGAAAGCAAAGTGGAAAT+TGG | 0.294808 | 1:-33503739 | MsaT002177.1:CDS |
TGGAGAATAATGGTGATATT+TGG | 0.299993 | 1:-33507622 | MsaT002177.1:CDS |
ATATTTCTCCACATATTTCT+TGG | 0.307927 | 1:+33507712 | None:intergenic |
ATTTCTTGTTGAACACCATT+TGG | 0.331479 | 1:+33507653 | None:intergenic |
TTGGAAATTTAAGAAATATT+GGG | 0.332062 | 1:+33507672 | None:intergenic |
CCTTGCAACTTCTTAGGGTT+TGG | 0.347894 | 1:+33506687 | None:intergenic |
GTTATCATTTGAGCTTCCTT+TGG | 0.355140 | 1:+33507389 | None:intergenic |
TATTTCTCCACATATTTCTT+GGG | 0.381095 | 1:+33507713 | None:intergenic |
AATTAACCCTACCGGGTGTT+TGG | 0.385019 | 1:+33503994 | None:intergenic |
AATATTATCTTATGAAAATC+GGG | 0.396040 | 1:+33507864 | None:intergenic |
GAAGCTCAAATGATAACAAA+TGG | 0.398449 | 1:-33507383 | MsaT002177.1:CDS |
TGTCATTAAAACTTCAAAGA+AGG | 0.419675 | 1:+33507076 | None:intergenic |
AAAATTGTGGAGTTGAAAAT+GGG | 0.422112 | 1:-33503844 | MsaT002177.1:CDS |
GTGTTTAAAGTTTCCATTGT+GGG | 0.433176 | 1:-33503676 | MsaT002177.1:CDS |
GATGAAACACAATACATTCA+AGG | 0.445828 | 1:-33504029 | MsaT002177.1:CDS |
CCAAAAGTGCATGCTCTTCA+GGG | 0.454566 | 1:-33505943 | MsaT002177.1:intron |
TATTGGTGGATCATATTTCA+AGG | 0.456312 | 1:-33507534 | MsaT002177.1:CDS |
CGTGGTTGTCAGTTCAGTAA+AGG | 0.468915 | 1:-33503778 | MsaT002177.1:CDS |
AACTGACAACCACGAATACT+AGG | 0.474382 | 1:+33503787 | None:intergenic |
ATTTATTATCCTAGTATTCG+TGG | 0.474870 | 1:-33503796 | MsaT002177.1:CDS |
TCTTCTAATTCTATGACTAC+TGG | 0.476068 | 1:-33506825 | MsaT002177.1:CDS |
TACTATTACTAAAGCCATCA+AGG | 0.479367 | 1:-33506712 | MsaT002177.1:CDS |
GTCATTAAAACTTCAAAGAA+GGG | 0.479979 | 1:+33507077 | None:intergenic |
TTACGCCCATGGTCATATCT+TGG | 0.485636 | 1:-33507048 | MsaT002177.1:intron |
ATATTTCTTAAATTTCCAAA+TGG | 0.500935 | 1:-33507668 | MsaT002177.1:CDS |
ATAGTAATAGTGAATAAAAG+TGG | 0.509655 | 1:+33506729 | None:intergenic |
CCAAAGAGATTTATGGAAAG+AGG | 0.511759 | 1:-33503877 | MsaT002177.1:CDS |
TATGATCTTGAAAAGTTGCA+TGG | 0.513402 | 1:+33506933 | None:intergenic |
AAGCTCAAATGATAACAAAT+GGG | 0.514121 | 1:-33507382 | MsaT002177.1:CDS |
AAGACATTGGAGAAACTTGT+AGG | 0.516345 | 1:-33505972 | MsaT002177.1:CDS |
TCATACTTGAACAAATTTGA+AGG | 0.519341 | 1:-33506915 | MsaT002177.1:CDS |
CATACTTGAACAAATTTGAA+GGG | 0.523429 | 1:-33506914 | MsaT002177.1:CDS |
GGGATTGCAAGCTTAAGAGT+TGG | 0.529065 | 1:-33506894 | MsaT002177.1:CDS |
ATGATCATGATATTCTAAAG+AGG | 0.534079 | 1:-33505996 | MsaT002177.1:CDS |
GTTGTCAGTTCAGTAAAGGT+TGG | 0.536590 | 1:-33503774 | MsaT002177.1:CDS |
TGCAAGCTTAAGAGTTGGAG+AGG | 0.542791 | 1:-33506889 | MsaT002177.1:CDS |
ATTCTAAAGAGGAAAGACAT+TGG | 0.551775 | 1:-33505985 | MsaT002177.1:CDS |
CTAATTCTATGACTACTGGT+TGG | 0.561386 | 1:-33506821 | MsaT002177.1:CDS |
GAGAATTCCCAAGAAATATG+TGG | 0.561715 | 1:-33507720 | MsaT002177.1:CDS |
AGAGGAGACAGCTATGAAAG+TGG | 0.577915 | 1:-33506871 | MsaT002177.1:CDS |
ATGATCTTGAAAAGTTGCAT+GGG | 0.587535 | 1:+33506934 | None:intergenic |
GAAATACTTGTCTCCTAGAG+CGG | 0.589908 | 1:-33503717 | MsaT002177.1:CDS |
CCAAACCCTAAGAAGTTGCA+AGG | 0.590895 | 1:-33506687 | MsaT002177.1:intron |
ATGACACAAACTTACGCCCA+TGG | 0.594951 | 1:-33507059 | MsaT002177.1:CDS |
TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1:-33507704 | MsaT002177.1:CDS |
ACTATTACTAAAGCCATCAA+GGG | 0.618938 | 1:-33506711 | MsaT002177.1:CDS |
ATTTATGGAAGAAAGCAAAG+TGG | 0.622753 | 1:-33503746 | MsaT002177.1:CDS |
AAATTGTGGAGTTGAAAATG+GGG | 0.628496 | 1:-33503843 | MsaT002177.1:CDS |
TGATGAGAGTGAAATACCAA+AGG | 0.631208 | 1:-33507405 | MsaT002177.1:CDS |
AATTGTGGAGTTGAAAATGG+GGG | 0.632867 | 1:-33503842 | MsaT002177.1:CDS |
TTTGGTAAATTCCAAACACC+CGG | 0.637463 | 1:-33504005 | MsaT002177.1:intron |
ATTGTGGAGTTGAAAATGGG+GGG | 0.654265 | 1:-33503841 | MsaT002177.1:CDS |
TGTGTTTAAAGTTTCCATTG+TGG | 0.655197 | 1:-33503677 | MsaT002177.1:CDS |
ACTTACCAAGATATGACCAT+GGG | 0.667874 | 1:+33507043 | None:intergenic |
ATATTATCTTATGAAAATCG+GGG | 0.668785 | 1:+33507865 | None:intergenic |
TATAAGGTTCTATCCCACAA+TGG | 0.669677 | 1:+33503663 | None:intergenic |
TACTTACCAAGATATGACCA+TGG | 0.678715 | 1:+33507042 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 33503672 | 33507904 | 33503672 | ID=MsaG002177 |
Chr1 | mRNA | 33503672 | 33507904 | 33503672 | ID=MsaT002177.1;Parent=MsaG002177 |
Chr1 | exon | 33503672 | 33503905 | 33503672 | ID=MsaT002177.1.exon7;Parent=MsaT002177.1 |
Chr1 | CDS | 33503672 | 33503905 | 33503672 | ID=cds.MsaT002177.1;Parent=MsaT002177.1 |
Chr1 | exon | 33504006 | 33504070 | 33504006 | ID=MsaT002177.1.exon6;Parent=MsaT002177.1 |
Chr1 | CDS | 33504006 | 33504070 | 33504006 | ID=cds.MsaT002177.1;Parent=MsaT002177.1 |
Chr1 | exon | 33505944 | 33506033 | 33505944 | ID=MsaT002177.1.exon5;Parent=MsaT002177.1 |
Chr1 | CDS | 33505944 | 33506033 | 33505944 | ID=cds.MsaT002177.1;Parent=MsaT002177.1 |
Chr1 | exon | 33506688 | 33506961 | 33506688 | ID=MsaT002177.1.exon4;Parent=MsaT002177.1 |
Chr1 | CDS | 33506688 | 33506961 | 33506688 | ID=cds.MsaT002177.1;Parent=MsaT002177.1 |
Chr1 | exon | 33507049 | 33507182 | 33507049 | ID=MsaT002177.1.exon3;Parent=MsaT002177.1 |
Chr1 | CDS | 33507049 | 33507182 | 33507049 | ID=cds.MsaT002177.1;Parent=MsaT002177.1 |
Chr1 | exon | 33507333 | 33507741 | 33507333 | ID=MsaT002177.1.exon2;Parent=MsaT002177.1 |
Chr1 | CDS | 33507333 | 33507741 | 33507333 | ID=cds.MsaT002177.1;Parent=MsaT002177.1 |
Chr1 | exon | 33507848 | 33507904 | 33507848 | ID=MsaT002177.1.exon1;Parent=MsaT002177.1 |
Chr1 | CDS | 33507848 | 33507904 | 33507848 | ID=cds.MsaT002177.1;Parent=MsaT002177.1 |
Gene Sequence |
Protein sequence |