AlfalfaGEDB | MsaG002291

M. sativa ssp. caerulea / MsaG002291

KEGG: -
GO: -
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002291	KEH41549.1	85.246	244	34	1	1	242	32	275	6.01e-136	394

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002291	tr\|A0A072VHP5\|A0A072VHP5_MEDTR	85.246	244	34	1	1	242	32	275	2.87e-136	394

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TFs/TRs:

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Gene ID	Type	Classification
MsaG002291	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG002291	0.832797	1.394526e-55	4.376016e-53
MsaG000188	MsaG002291	0.819951	1.552995e-52	3.411189e-50
MsaG000400	MsaG002291	0.819720	1.752460e-52	3.825589e-50
MsaG001030	MsaG002291	0.809104	3.806348e-50	6.361266e-48
MsaG001584	MsaG002291	0.805688	2.002389e-49	3.084726e-47
MsaG001835	MsaG002291	0.816938	7.424573e-52	1.507892e-49
MsaG001861	MsaG002291	0.820496	1.166494e-52	2.599445e-50
MsaG002146	MsaG002291	0.838066	6.589440e-57	2.421685e-54
MsaG002291	MsaG002414	0.812801	6.075872e-51	1.111487e-48
MsaG002291	MsaG002539	0.811801	1.001851e-50	1.787953e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002291	MtrunA17_Chr1g0172861	85.246	244	34	1	1	242	32	275	5.53e-140	394
MsaG002291	MtrunA17_Chr1g0172961	43.802	242	89	10	1	213	32	255	4.21e-37	131
MsaG002291	MtrunA17_Chr1g0169561	36.242	298	115	12	1	246	40	314	2.20e-34	125
MsaG002291	MtrunA17_Chr1g0169521	35.906	298	116	13	1	246	40	314	1.70e-31	117
MsaG002291	MtrunA17_Chr4g0037041	55.556	117	29	4	1	103	32	139	7.80e-31	113
MsaG002291	MtrunA17_Chr7g0214511	37.069	232	104	12	37	246	74	285	3.84e-19	84.3
MsaG002291	MtrunA17_Chr1g0174871	32.130	277	132	12	1	246	32	283	5.40e-16	75.5
MsaG002291	MtrunA17_Chr2g0331601	40.385	104	41	4	2	84	138	241	3.77e-13	67.8
MsaG002291	MtrunA17_Chr1g0193731	30.870	230	121	10	33	242	54	265	1.03e-11	63.5
MsaG002291	MtrunA17_Chr1g0174861	29.940	167	88	6	9	153	27	186	8.98e-11	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002291	AT5G43170.1	42.308	78	39	1	2	79	75	146	1.24e-11	62.4
MsaG002291	AT2G37430.1	33.058	121	73	4	2	122	47	159	1.78e-11	61.6
MsaG002291	AT3G49930.1	43.038	79	37	2	2	73	94	171	3.70e-11	61.2
MsaG002291	AT5G67450.1	39.560	91	35	3	2	73	97	186	7.28e-11	60.8

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Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCCGGAGCCGCACTCGG+TGG	0.593152	1:+36804006	MsaT002291.1:CDS
AAGAGGCGGAAACTTTCCTG+CGG	0.719801	1:+36804357	MsaT002291.1:CDS
AAGTCAATTGACGATGAAGT+TGG	0.540982	1:-36804219	None:intergenic
ACACAATCATGCTGTTAATA+AGG	0.281805	1:+36804074	MsaT002291.1:CDS
AGACCAATAAAGGTAGCAAG+AGG	0.628089	1:+36804271	MsaT002291.1:CDS
AGTGTGAGTTGTGCGGCAAA+AGG	0.579769	1:+36803980	MsaT002291.1:CDS
ATAATCATGGTGAGAGGAAG+AGG	0.500570	1:+36804340	MsaT002291.1:CDS
ATAATGAAGGTGAAACTGAG+AGG	0.653304	1:+36804601	MsaT002291.1:CDS
ATATCTCATCAGACCAATAA+AGG	0.385178	1:+36804261	MsaT002291.1:CDS
ATATCTCATGATAATAATCA+TGG	0.526348	1:+36804327	MsaT002291.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	36803973	36804713	36803973	ID=MsaG002291
Chr1	mRNA	36803973	36804713	36803973	ID=MsaT002291.1;Parent=MsaG002291
Chr1	exon	36803973	36804713	36803973	ID=MsaT002291.1.exon1;Parent=MsaT002291.1
Chr1	CDS	36803973	36804713	36803973	ID=cds.MsaT002291.1;Parent=MsaT002291.1

Gene Sequence

>MsaT002291.1

ATGTATGAGTGTGAGTTGTGCGGCAAAAGGTTCAACTCCGGAGCCGCACTCGGTGGCCACAAAACATCTCACCGCTCACAACCTCAAAACAAGAAACAAAGACACAATCATGCTGTTAATAAGGATGATAAAGACGATGAGAAACAGGAACATTGTTGTGATGTTTGCAACAAGGTTTTTTCATCCAAGCAGGCTTTGTGTGGACACATGAGATGTCACAAAAGAGACGGGAAGAGTATTCACCCTCCAACTTCATCGTCAATTGACTTATCAAAATATATGCTACCAATATCTCATCAGACCAATAAAGGTAGCAAGAGGAATATCTTTGATGACGATGTTGCTCCAACACTCATATCTCATGATAATAATCATGGTGAGAGGAAGAGGCGGAAACTTTCCTGCGGTGATATGGTTAATGAGACGGTCAAGGAACAAACTGTGATGCTAACTGCGAGTCATGTTAGGGTTAATGATGAAATAGTGGTGATCAAAGTGAAAGATGACAGCGGAAATAAAAGACTCAAACTTTCAAGCAATTCTGAAGATATTGTTGACATTGATCAATCACGAGAGACCAAGGTAAAGGATAATAATACCTCTATTGACATTGAAGAGAAGAAGATCAATAATGAAGGTGAAACTGAGAGGGAACAAAGTCATAATGAATTGAAGTCAAATAGAGTTGTTATGAATTTTGATTTGAATGAGCGTCCGATGGAAGATGTTGCAGATGAGTGA

Protein sequence

>MsaT002291.1

MYECELCGKRFNSGAALGGHKTSHRSQPQNKKQRHNHAVNKDDKDDEKQEHCCDVCNKVFSSKQALCGHMRCHKRDGKSIHPPTSSSIDLSKYMLPISHQTNKGSKRNIFDDDVAPTLISHDNNHGERKRRKLSCGDMVNETVKEQTVMLTASHVRVNDEIVVIKVKDDSGNKRLKLSSNSEDIVDIDQSRETKVKDNNTSIDIEEKKINNEGETEREQSHNELKSNRVVMNFDLNERPMEDVADE*