AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG002307


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG002307 MtrunA17_Chr8g0368911 84.706 425 58 2 1 424 30 448 0.0 712
MsaG002307 MtrunA17_Chr8g0368911 88.235 221 26 0 411 631 540 760 3.71e-142 432
MsaG002307 MtrunA17_Chr8g0368901 65.228 417 120 8 5 411 41 442 8.78e-160 477
MsaG002307 MtrunA17_Chr8g0368901 88.341 223 26 0 411 633 547 769 1.77e-145 440
MsaG002307 MtrunA17_Chr8g0369301 79.372 223 46 0 411 633 527 749 2.46e-133 408
MsaG002307 MtrunA17_Chr8g0369301 54.676 417 138 7 13 424 65 435 1.61e-127 393
MsaG002307 MtrunA17_Chr1g0163051 70.852 223 64 1 411 632 436 658 1.46e-113 354
MsaG002307 MtrunA17_Chr1g0163051 70.548 146 40 2 266 411 189 331 4.77e-59 209
MsaG002307 MtrunA17_Chr2g0306961 40.119 506 199 11 170 621 8 463 6.79e-108 333
MsaG002307 MtrunA17_Chr1g0163041 63.208 212 78 0 413 624 357 568 2.66e-96 307
MsaG002307 MtrunA17_Chr1g0163041 38.462 338 126 10 157 476 53 326 4.22e-51 186
MsaG002307 MtrunA17_Chr6g0467421 61.353 207 72 4 419 621 362 564 4.47e-86 280
MsaG002307 MtrunA17_Chr6g0467421 55.556 144 54 2 266 409 109 242 9.01e-41 156
MsaG002307 MtrunA17_Chr6g0467381 61.353 207 72 4 419 621 362 564 4.86e-86 280
MsaG002307 MtrunA17_Chr6g0467381 56.250 144 53 2 266 409 109 242 2.89e-41 158
MsaG002307 MtrunA17_Chr6g0467531 61.353 207 72 4 419 621 362 564 7.10e-86 279
MsaG002307 MtrunA17_Chr6g0467531 56.250 144 53 2 266 409 109 242 2.02e-41 158
MsaG002307 MtrunA17_Chr6g0467401 60.870 207 73 4 419 621 362 564 1.87e-84 275
MsaG002307 MtrunA17_Chr6g0467401 55.556 144 54 2 266 409 109 242 8.92e-41 156
MsaG002307 MtrunA17_Chr6g0467411 59.903 207 75 4 419 621 280 482 3.25e-83 270
MsaG002307 MtrunA17_Chr6g0467411 43.590 195 92 4 219 409 1 181 9.34e-38 146
MsaG002307 MtrunA17_Chr3g0094881 58.108 222 81 5 419 632 421 638 5.32e-82 271
MsaG002307 MtrunA17_Chr3g0094881 44.886 176 84 3 238 411 140 304 1.45e-36 145
MsaG002307 MtrunA17_Chr8g0357391 82.222 135 22 2 156 289 1 134 3.94e-65 212
MsaG002307 MtrunA17_Chr4g0003511 45.854 205 109 1 417 619 817 1021 2.10e-56 206
MsaG002307 MtrunA17_Chr4g0003511 43.038 158 77 4 269 424 582 728 3.66e-24 108
MsaG002307 MtrunA17_Chr5g0399801 44.878 205 111 1 417 619 854 1058 8.92e-56 204
MsaG002307 MtrunA17_Chr5g0399801 44.604 139 71 2 269 407 618 750 1.08e-27 119
MsaG002307 MtrunA17_Chr4g0003501 43.902 205 111 2 417 619 722 924 2.34e-50 188
MsaG002307 MtrunA17_Chr4g0003501 45.038 131 66 2 269 399 487 611 1.38e-24 109
MsaG002307 MtrunA17_Chr7g0252211 40.826 218 115 5 415 620 512 727 8.36e-46 173
MsaG002307 MtrunA17_Chr7g0252211 40.000 145 79 4 260 399 252 393 1.24e-19 93.6
MsaG002307 MtrunA17_Chr6g0476111 40.826 218 115 5 415 620 449 664 4.12e-45 171
MsaG002307 MtrunA17_Chr6g0476111 40.909 132 70 5 272 399 203 330 8.73e-18 87.4
MsaG002307 MtrunA17_Chr3g0080761 42.254 213 110 6 418 620 424 633 7.15e-45 169
MsaG002307 MtrunA17_Chr3g0080761 45.588 136 71 2 266 401 174 306 5.79e-26 113
MsaG002307 MtrunA17_Chr8g0354821 40.566 212 116 4 418 621 449 658 7.55e-45 170
MsaG002307 MtrunA17_Chr8g0354821 42.241 116 65 1 286 401 220 333 8.06e-22 100
MsaG002307 MtrunA17_Chr6g0476121 40.367 218 116 5 415 620 398 613 1.02e-43 166
MsaG002307 MtrunA17_Chr6g0476121 40.909 132 70 5 272 399 152 279 1.26e-17 87.0
MsaG002307 MtrunA17_Chr7g0255181 40.566 212 107 5 417 621 481 680 2.90e-43 165
MsaG002307 MtrunA17_Chr7g0255181 47.552 143 66 4 261 401 231 366 4.23e-30 126
MsaG002307 MtrunA17_Chr7g0232811 31.894 417 203 15 269 619 107 508 5.76e-43 162
MsaG002307 MtrunA17_Chr7g0232981 30.941 404 201 12 269 619 107 485 2.33e-35 140
MsaG002307 MtrunA17_Chr7g0232841 31.982 222 105 6 415 619 305 497 3.02e-26 113
MsaG002307 MtrunA17_Chr1g0170651 32.850 207 110 4 417 619 339 520 3.73e-22 100
MsaG002307 MtrunA17_Chr1g0170651 41.353 133 70 4 266 397 81 206 2.41e-17 85.9
MsaG002307 MtrunA17_Chr8g0373821 30.645 186 115 3 435 619 343 515 3.24e-21 97.8
MsaG002307 MtrunA17_Chr5g0403241 32.512 203 116 7 436 633 1310 1496 2.10e-19 93.2
MsaG002307 MtrunA17_Chr4g0075321 30.645 186 113 4 437 619 868 1040 4.32e-19 92.0
MsaG002307 MtrunA17_Chr1g0183321 26.641 259 125 10 413 621 477 720 5.67e-18 88.2
MsaG002307 MtrunA17_Chr1g0190311 26.971 241 115 8 428 621 392 618 5.70e-17 84.7
MsaG002307 MtrunA17_Chr7g0232861 38.776 147 74 6 269 415 106 236 2.63e-16 79.0
MsaG002307 MtrunA17_Chr7g0262001 25.726 241 115 8 428 621 453 676 2.50e-12 70.1
MsaG002307 MtrunA17_Chr7g0232751 44.828 58 32 0 562 619 31 88 3.37e-11 60.8
MsaG002307 MtrunA17_Chr7g0232871 34.000 100 62 2 460 555 3 102 3.39e-11 60.5
MsaG002307 MtrunA17_Chr7g0232761 38.760 129 63 6 269 397 123 235 3.95e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG002307 AT4G13460.1 62.780 223 82 1 411 632 427 649 3.86e-103 327
MsaG002307 AT4G13460.1 61.438 153 55 3 256 408 172 320 5.93e-48 179
MsaG002307 AT4G13460.2 62.780 223 82 1 411 632 427 649 3.86e-103 327
MsaG002307 AT4G13460.2 61.438 153 55 3 256 408 172 320 5.93e-48 179
MsaG002307 AT2G33290.1 64.516 217 77 0 416 632 434 650 1.14e-102 326
MsaG002307 AT2G33290.1 50.761 197 82 6 258 453 179 361 1.01e-46 175
MsaG002307 AT2G33290.3 64.516 217 77 0 416 632 434 650 1.14e-102 326
MsaG002307 AT2G33290.3 50.761 197 82 6 258 453 179 361 1.01e-46 175
MsaG002307 AT2G33290.4 64.516 217 77 0 416 632 434 650 1.14e-102 326
MsaG002307 AT2G33290.4 50.761 197 82 6 258 453 179 361 1.01e-46 175
MsaG002307 AT2G33290.2 64.516 217 77 0 416 632 434 650 1.14e-102 326
MsaG002307 AT2G33290.2 50.761 197 82 6 258 453 179 361 1.01e-46 175
MsaG002307 AT2G35160.5 41.667 204 90 4 418 619 551 727 1.94e-45 172
MsaG002307 AT2G35160.5 40.000 145 80 3 259 401 298 437 2.80e-22 102
MsaG002307 AT2G35160.2 41.667 204 90 4 418 619 587 763 2.08e-45 173
MsaG002307 AT2G35160.2 40.000 145 80 3 259 401 334 473 2.74e-22 102
MsaG002307 AT2G35160.3 41.667 204 90 4 418 619 587 763 2.08e-45 173
MsaG002307 AT2G35160.3 40.000 145 80 3 259 401 334 473 2.74e-22 102
MsaG002307 AT2G35160.1 41.667 204 90 4 418 619 587 763 2.08e-45 173
MsaG002307 AT2G35160.1 40.000 145 80 3 259 401 334 473 2.74e-22 102
MsaG002307 AT2G35160.4 41.667 204 90 4 418 619 587 763 2.08e-45 173
MsaG002307 AT2G35160.4 40.000 145 80 3 259 401 334 473 2.74e-22 102
MsaG002307 AT2G22740.2 40.097 207 119 2 418 619 553 759 4.24e-44 169
MsaG002307 AT2G22740.2 39.456 147 77 4 259 399 299 439 4.00e-19 92.4
MsaG002307 AT2G22740.1 40.097 207 119 2 418 619 553 759 4.24e-44 169
MsaG002307 AT2G22740.1 39.456 147 77 4 259 399 299 439 4.00e-19 92.4
MsaG002307 AT5G13960.2 40.092 217 117 5 415 620 246 460 1.73e-43 163
MsaG002307 AT5G13960.2 40.336 119 64 3 286 399 11 127 5.25e-18 87.8
MsaG002307 AT5G13960.1 40.092 217 117 5 415 620 380 594 2.19e-43 165
MsaG002307 AT5G13960.1 40.336 119 64 3 286 399 145 261 4.57e-18 88.6
MsaG002307 AT5G04940.2 38.288 222 106 4 417 621 433 640 1.91e-42 163
MsaG002307 AT5G04940.2 47.414 116 58 2 286 401 207 319 1.27e-22 103
MsaG002307 AT5G04940.1 38.288 222 106 4 417 621 433 640 1.91e-42 163
MsaG002307 AT5G04940.1 47.414 116 58 2 286 401 207 319 1.27e-22 103
MsaG002307 AT1G73100.1 38.426 216 115 4 417 621 431 639 3.36e-37 147
MsaG002307 AT1G73100.1 46.032 126 63 3 286 411 204 324 3.60e-24 108
MsaG002307 AT1G17770.1 38.537 205 101 7 428 621 471 661 5.90e-33 135
MsaG002307 AT1G17770.1 39.130 115 66 2 286 400 223 333 3.31e-18 89.4
MsaG002307 AT2G24740.1 39.409 203 97 8 428 621 539 724 8.61e-31 129
MsaG002307 AT2G24740.1 46.552 116 53 2 287 402 307 413 6.40e-21 97.8
MsaG002307 AT2G23740.1 33.333 195 107 6 438 624 1177 1356 2.03e-22 103
MsaG002307 AT2G23740.3 33.333 195 107 6 438 624 1184 1363 2.08e-22 103
MsaG002307 AT2G23740.6 33.333 195 107 6 438 624 1184 1363 2.08e-22 103
MsaG002307 AT2G23740.2 33.333 195 107 6 438 624 1184 1363 2.08e-22 103
MsaG002307 AT3G03750.2 31.507 219 120 7 407 620 130 323 4.23e-17 84.0
MsaG002307 AT5G47150.1 42.373 118 62 3 282 399 169 280 7.03e-17 82.8
MsaG002307 AT2G23740.4 34.247 146 76 5 438 578 1184 1314 1.66e-16 84.3
MsaG002307 AT2G23740.5 34.247 146 76 5 438 578 1184 1314 1.66e-16 84.3
MsaG002307 AT5G47160.1 39.370 127 70 4 274 399 247 367 1.44e-14 76.6
MsaG002307 AT5G47160.3 39.370 127 70 4 274 399 247 367 1.44e-14 76.6
MsaG002307 AT5G47160.2 39.370 127 70 4 274 399 247 367 1.44e-14 76.6
MsaG002307 AT1G04050.3 28.177 181 111 5 443 621 430 593 8.38e-13 72.0
MsaG002307 AT1G04050.2 28.177 181 111 5 443 621 534 697 1.02e-12 71.6
MsaG002307 AT1G04050.1 28.177 181 111 5 443 621 534 697 1.02e-12 71.6

Find 179 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTAGTGTGATTGTTTC+AGG 0.189529 1:+36952590 MsaT002307.1:CDS
TCCTCAAAAGGTTTAGGTTT+TGG 0.199470 1:-36951654 None:intergenic
AAGCGGTGCTCCGGTGTAAA+TGG 0.221260 1:-36951616 None:intergenic
TAGGTCCTTGGATCTTATTC+AGG 0.256771 1:+36953374 MsaT002307.1:CDS
TGTTTCTGAAGTTGCGATTA+TGG 0.271621 1:+36952265 MsaT002307.1:CDS
AGATTCTTGTTTCTTTGAAA+TGG 0.278142 1:-36951991 None:intergenic
AAGCAAACCCTGAAGATTAT+AGG 0.291078 1:-36953217 None:intergenic
AAGAAATCCTCAAAAGGTTT+AGG 0.291529 1:-36951660 None:intergenic
AATTATTGAGGAGAAGAAAT+TGG 0.298748 1:+36952172 MsaT002307.1:CDS
AGAGTTTCCCTATAATCTTC+AGG 0.299770 1:+36953209 MsaT002307.1:CDS
GGTAGCTATGGTTAAGAAAA+AGG 0.309499 1:+36952022 MsaT002307.1:CDS
TATGGTTGCATCGCGATAAA+AGG 0.310327 1:+36952426 MsaT002307.1:CDS
CATCTATCTATAAACCGTTT+TGG 0.314837 1:-36953486 None:intergenic
AGCTTGCCCGCCCACTCGTC+AGG 0.315436 1:-36953765 None:intergenic
TGCAACACGATTCCGACAAT+TGG 0.331483 1:-36953292 None:intergenic
AGGTGGTTATGAGGATGATA+TGG 0.333296 1:+36952610 MsaT002307.1:CDS
CAGGTCTGCGCAAACTGGTT+GGG 0.335408 1:+36953347 MsaT002307.1:CDS
ATACATTTGGACTCGAACTA+TGG 0.339033 1:-36953632 None:intergenic
TTGGGAGGACAAGAGCAAAA+AGG 0.339571 1:-36953273 None:intergenic
GGTGTAAATGGGAGTGATTT+GGG 0.344967 1:-36951604 None:intergenic
CGCAAACTGGTTGGGGAGTT+AGG 0.346834 1:+36953355 MsaT002307.1:CDS
CGGTGTAAATGGGAGTGATT+TGG 0.348980 1:-36951605 None:intergenic
AGAGGTAGCAACAGGGGTGG+AGG 0.363969 1:+36952322 MsaT002307.1:CDS
ACCTGATATAGATTATTCTA+TGG 0.365689 1:+36953572 MsaT002307.1:CDS
AGCAAACCCTGAAGATTATA+GGG 0.370075 1:-36953216 None:intergenic
CAAAACGGTTTATAGATAGA+TGG 0.370356 1:+36953487 MsaT002307.1:CDS
ACAAATTGAACAAATACATT+TGG 0.370419 1:-36953645 None:intergenic
CCCGGTATACTCGCAGATAA+AGG 0.370510 1:-36953403 None:intergenic
TCCATAGAATAATCTATATC+AGG 0.373576 1:-36953573 None:intergenic
ATGGTGGAATTATGTGTAAT+TGG 0.382160 1:+36952497 MsaT002307.1:CDS
TATAGATAGATGGGCAGAAT+GGG 0.382516 1:+36953497 MsaT002307.1:CDS
GATTCTTGTTTCTTTGAAAT+GGG 0.395729 1:-36951990 None:intergenic
TGGGAGTGATTTGGGGATTG+AGG 0.396090 1:-36951596 None:intergenic
AGCATAGGTTGGAAGTGTTC+AGG 0.397659 1:+36953328 MsaT002307.1:CDS
ATCATAGTCGTGGTTTCATA+AGG 0.402492 1:+36952375 MsaT002307.1:CDS
TCGGAATCGTGTTGCACAAA+AGG 0.405257 1:+36953299 MsaT002307.1:CDS
GCTCTTGTCCTCCCAATTGT+CGG 0.405346 1:+36953280 MsaT002307.1:CDS
GCATTACGGGATCGAGATTA+GGG 0.408510 1:+36952751 MsaT002307.1:CDS
GGGAGTGATTTGGGGATTGA+GGG 0.409415 1:-36951595 None:intergenic
CTGATCACAAATTTGAATTG+AGG 0.414878 1:-36952690 None:intergenic
CGCGATGCAACCATAACTTT+CGG 0.415089 1:-36952418 None:intergenic
TCAACATTGCGAAATGTTGC+TGG 0.416135 1:+36953600 MsaT002307.1:CDS
AACATGGAAGAGGTAGCAAC+AGG 0.418367 1:+36952314 MsaT002307.1:CDS
GCTTGTGAAAGGGAAGCCTT+TGG 0.419411 1:+36953236 MsaT002307.1:CDS
AAAATGATAAAGGGATTTAT+CGG 0.421885 1:-36951832 None:intergenic
TGCATTACGGGATCGAGATT+AGG 0.423214 1:+36952750 MsaT002307.1:CDS
GGCAGTGAAGAGATTGGTTG+AGG 0.423218 1:+36952214 MsaT002307.1:CDS
TTATGAGGATGATATGGAAT+TGG 0.423427 1:+36952616 MsaT002307.1:CDS
GGTAGCAACAGGGGTGGAGG+GGG 0.427970 1:+36952325 MsaT002307.1:CDS
TGAAGCGGCAAAAGCATTGT+TGG 0.430143 1:-36951871 None:intergenic
AGAGGGTGGAAACCTTGCTT+TGG 0.434560 1:+36952718 MsaT002307.1:CDS
CGGAATCGTGTTGCACAAAA+GGG 0.437967 1:+36953300 MsaT002307.1:CDS
GCCTTTATCTGCGAGTATAC+CGG 0.438710 1:+36953402 MsaT002307.1:CDS
TCCTTGGATCTTATTCAGGC+TGG 0.446886 1:+36953378 MsaT002307.1:CDS
AGGTAGCAACAGGGGTGGAG+GGG 0.448282 1:+36952324 MsaT002307.1:CDS
CCTTTATCTGCGAGTATACC+GGG 0.450373 1:+36953403 MsaT002307.1:CDS
CATCAGAGCGGGAAAGCTAC+TGG 0.454438 1:+36953129 MsaT002307.1:intron
AGAGAACTCAGCATAGACTA+TGG 0.455539 1:+36953738 MsaT002307.1:CDS
TTGGAACGTAGTATGCATTA+CGG 0.455891 1:+36952737 MsaT002307.1:CDS
TCAGGTATTAATTGATATGA+TGG 0.462483 1:-36953555 None:intergenic
GAGTTTCCCTATAATCTTCA+GGG 0.462595 1:+36953210 MsaT002307.1:CDS
GATTGTTTCAGGTGGTTATG+AGG 0.465005 1:+36952601 MsaT002307.1:CDS
TGAAGTTGCGATTATGGAGA+TGG 0.466700 1:+36952271 MsaT002307.1:CDS
AATCAACCTCATTTCCCTCC+TGG 0.471602 1:+36951738 MsaT002307.1:CDS
ACAATCACACTAGTAGCAAT+TGG 0.471909 1:-36952584 None:intergenic
CATCGCGATAAAAGGATAGT+TGG 0.475915 1:+36952434 MsaT002307.1:CDS
TCAGGTCTGCGCAAACTGGT+TGG 0.479909 1:+36953346 MsaT002307.1:CDS
AGTAGCAATTGGCTCGCCAT+TGG 0.481657 1:-36952573 None:intergenic
TAATGAAGGACCGAAAGTTA+TGG 0.481674 1:+36952408 MsaT002307.1:CDS
CTTCAGGGTTTGCTTGTGAA+AGG 0.482699 1:+36953225 MsaT002307.1:CDS
TCAGTCAATATTTCCGACCT+TGG 0.482765 1:+36951903 MsaT002307.1:CDS
AGGTCTGCGCAAACTGGTTG+GGG 0.482929 1:+36953348 MsaT002307.1:CDS
AATTCTTCTTTCTTCCTCCA+TGG 0.483343 1:-36952667 None:intergenic
GCAACACGATTCCGACAATT+GGG 0.485278 1:-36953291 None:intergenic
TGCGATTATGGAGATGGAGA+TGG 0.487265 1:+36952277 MsaT002307.1:CDS
TGGAACGTAGTATGCATTAC+GGG 0.489608 1:+36952738 MsaT002307.1:CDS
GTGTTCAGGTCTGCGCAAAC+TGG 0.491340 1:+36953342 MsaT002307.1:CDS
GGATGAGAAAAGAATTATTG+AGG 0.492648 1:+36952160 MsaT002307.1:CDS
TGTGGAGGCAGTGAAGAGAT+TGG 0.494725 1:+36952208 MsaT002307.1:CDS
AGCGGTGCTCCGGTGTAAAT+GGG 0.497581 1:-36951615 None:intergenic
AAACAACCTCATTTCCCTCA+TGG 0.500206 1:+36951702 MsaT002307.1:CDS
ATTGGTTGAGGAGAATATGT+TGG 0.501697 1:+36952226 MsaT002307.1:CDS
GGATTTATCGGAAGTAGCAT+TGG 0.502335 1:-36951820 None:intergenic
TTCAGGGTTTGCTTGTGAAA+GGG 0.502624 1:+36953226 MsaT002307.1:CDS
TATGGTTTGAAGCGGTGCTC+CGG 0.502918 1:-36951625 None:intergenic
CTTCTTTCTTCCTCCATGGC+CGG 0.504486 1:-36952663 None:intergenic
TGTGTGGAGGCTTGTACTGA+TGG 0.507598 1:+36953159 MsaT002307.1:CDS
AGAATATGTTGGATGAGGAT+AGG 0.509832 1:+36952237 MsaT002307.1:CDS
GAGGTAGCAACAGGGGTGGA+GGG 0.511415 1:+36952323 MsaT002307.1:CDS
TAGATAGATGGGCAGAATGG+GGG 0.511424 1:+36953499 MsaT002307.1:CDS
AGGATAGTTGGATCGATACC+TGG 0.518534 1:+36952446 MsaT002307.1:CDS
GGCATCCCTGACGAGTGGGC+GGG 0.520972 1:+36953759 MsaT002307.1:CDS
ATCTTGTTCGACGGTAGCTA+TGG 0.523651 1:+36952010 MsaT002307.1:CDS
ACTCGTTAATATATCCAAAA+CGG 0.524396 1:+36953472 MsaT002307.1:CDS
GAGGATTTCTTCACCACCCA+AGG 0.525934 1:+36951672 MsaT002307.1:CDS
GCGATTATGGAGATGGAGAT+GGG 0.528244 1:+36952278 MsaT002307.1:CDS
ACTAAACCAGAACCCTATCA+TGG 0.531215 1:+36951926 MsaT002307.1:CDS
TCATAGTCGTGGTTTCATAA+GGG 0.531523 1:+36952376 MsaT002307.1:CDS
ATGGAGATGGAGATGGGAGC+TGG 0.532864 1:+36952284 MsaT002307.1:CDS
TTATAGATAGATGGGCAGAA+TGG 0.533260 1:+36953496 MsaT002307.1:CDS
GTAATAATCAATACCGGCCA+TGG 0.534042 1:+36952650 MsaT002307.1:CDS
AGATAGATGGGCAGAATGGG+GGG 0.535500 1:+36953500 MsaT002307.1:CDS
AAAACGGTTTATAGATAGAT+GGG 0.536629 1:+36953488 MsaT002307.1:CDS
TCGATACCTGGAGTTTATGT+TGG 0.538082 1:+36952458 MsaT002307.1:CDS
TTATGATTCGCTACGTGTGT+TGG 0.545706 1:+36952127 MsaT002307.1:CDS
GTGGTGAAGAAATCCTCAAA+AGG 0.546407 1:-36951666 None:intergenic
AATTTGTGATCAGAAATTAG+AGG 0.546612 1:+36952700 MsaT002307.1:CDS
GACTGAGTTCTCCATTGAAG+CGG 0.547564 1:-36951886 None:intergenic
AAAGGGGATCAAGCATAGGT+TGG 0.547811 1:+36953317 MsaT002307.1:CDS
CCGTCTCATGCTATATGCAA+TGG 0.560658 1:+36953698 MsaT002307.1:CDS
GAAGTAGCATTGGAAGGTTG+TGG 0.561967 1:-36951810 None:intergenic
TAGGGTTCTGGTTTAGTCCA+AGG 0.562479 1:-36951920 None:intergenic
AGGCAAGTCAGATGCTTGTG+AGG 0.562686 1:+36952042 MsaT002307.1:CDS
GGTGATGTAATAATCAATAC+CGG 0.563689 1:+36952644 MsaT002307.1:CDS
GCATACTACGTTCCAAAGCA+AGG 0.565214 1:-36952730 None:intergenic
GGGTGCGTCTAGCTCTGGTA+AGG 0.568302 1:+36952799 MsaT002307.1:CDS
TGGCATCCCTGACGAGTGGG+CGG 0.569853 1:+36953758 MsaT002307.1:CDS
CATTGCATATAGCATGAGAC+GGG 0.574005 1:-36953697 None:intergenic
TTATCGGAAGTAGCATTGGA+AGG 0.574777 1:-36951816 None:intergenic
TTCGTGGGATGAAGTATGAA+GGG 0.576304 1:+36952777 MsaT002307.1:CDS
ATAGATAGATGGGCAGAATG+GGG 0.576328 1:+36953498 MsaT002307.1:CDS
AAGGGCTGCGAGGTTAATGA+AGG 0.576510 1:+36952394 MsaT002307.1:CDS
ATCGAGATTAGGGTCATTCG+TGG 0.577854 1:+36952761 MsaT002307.1:CDS
CTAAACCAGAACCCTATCAT+GGG 0.578165 1:+36951927 MsaT002307.1:CDS
TGGTGATGAGAACATGGAAG+AGG 0.579103 1:+36952304 MsaT002307.1:CDS
GGTTTCAGATCTGAGTATGA+AGG 0.579176 1:+36952064 MsaT002307.1:CDS
ATTTGTGATCAGAAATTAGA+GGG 0.579266 1:+36952701 MsaT002307.1:CDS
ATTCGTGGGATGAAGTATGA+AGG 0.581363 1:+36952776 MsaT002307.1:CDS
GCTTGCCCGCCCACTCGTCA+GGG 0.582498 1:-36953764 None:intergenic
TGAGGAGAATATGTTGGATG+AGG 0.583666 1:+36952232 MsaT002307.1:CDS
TTGCATATGCAGATACAAGC+TGG 0.583868 1:+36952521 MsaT002307.1:CDS
TGCTGAGTTCTCTCAATGGA+GGG 0.584149 1:-36953728 None:intergenic
GTGTAAATGGGAGTGATTTG+GGG 0.585866 1:-36951603 None:intergenic
TTCCCTTGTTAAAATTACCC+CGG 0.586982 1:-36953421 None:intergenic
ACATCGCCAACATAAACTCC+AGG 0.587833 1:-36952464 None:intergenic
CCATTGCATATAGCATGAGA+CGG 0.588288 1:-36953698 None:intergenic
TCATATCCAGGAGGGAAATG+AGG 0.588395 1:-36951744 None:intergenic
GGGACGAGTATGGTTTGAAG+CGG 0.590830 1:-36951633 None:intergenic
TGGTTGGGGAGTTAGGTCCT+TGG 0.593647 1:+36953362 MsaT002307.1:CDS
TCATATCCATGAGGGAAATG+AGG 0.597266 1:-36951708 None:intergenic
AGCTACTGGTTGTGAATGTG+TGG 0.598292 1:+36953143 MsaT002307.1:CDS
GGCAAGTCAGATGCTTGTGA+GGG 0.598305 1:+36952043 MsaT002307.1:CDS
ACTAGTGTGATTGTTTCAGG+TGG 0.600870 1:+36952593 MsaT002307.1:CDS
TGTTGTAGTACTCAGTGTAG+AGG 0.601469 1:-36951785 None:intergenic
ATGCTGAGTTCTCTCAATGG+AGG 0.603033 1:-36953729 None:intergenic
GGGAGCTGGTGATGAGAACA+TGG 0.604987 1:+36952298 MsaT002307.1:CDS
TCTATGCTGAGTTCTCTCAA+TGG 0.607917 1:-36953732 None:intergenic
AGATGCATCGCAACATGATG+AGG 0.612112 1:+36952090 MsaT002307.1:CDS
GGAAGAGGTAGCAACAGGGG+TGG 0.616106 1:+36952319 MsaT002307.1:CDS
TCCAGCCTGAATAAGATCCA+AGG 0.619090 1:-36953379 None:intergenic
GTTCTGGTTTAGTCCAAGGT+CGG 0.620365 1:-36951916 None:intergenic
GAAACAAGAATCTTGTTCGA+CGG 0.620737 1:+36952001 MsaT002307.1:CDS
CTATGGCATCCCTGACGAGT+GGG 0.626017 1:+36953755 MsaT002307.1:CDS
GCAACATGATGAGGAGAACA+AGG 0.627298 1:+36952099 MsaT002307.1:CDS
ACATGGAAGAGGTAGCAACA+GGG 0.627473 1:+36952315 MsaT002307.1:CDS
ACGTGTGTTGGAAAGTATTG+AGG 0.633669 1:+36952139 MsaT002307.1:CDS
TGTGATCAGAAATTAGAGGG+TGG 0.640509 1:+36952704 MsaT002307.1:CDS
AGACATCATAATCATAGTCG+TGG 0.641416 1:+36952365 MsaT002307.1:CDS
CACAAAAGGGGATCAAGCAT+AGG 0.642092 1:+36953313 MsaT002307.1:CDS
TACTGGTTGTGAATGTGTGG+AGG 0.644458 1:+36953146 MsaT002307.1:CDS
CATGGAAGAGGTAGCAACAG+GGG 0.645322 1:+36952316 MsaT002307.1:CDS
CAAATCACTCCCATTTACAC+CGG 0.645622 1:+36951606 MsaT002307.1:CDS
ACTATGGCATCCCTGACGAG+TGG 0.651275 1:+36953754 MsaT002307.1:CDS
ACACGATTCCGACAATTGGG+AGG 0.651351 1:-36953288 None:intergenic
TCGTGGGATGAAGTATGAAG+GGG 0.657054 1:+36952778 MsaT002307.1:CDS
CCTAAAAGTAGGTCTTCCAA+TGG 0.661785 1:+36952557 MsaT002307.1:CDS
GGAATCGTGTTGCACAAAAG+GGG 0.665750 1:+36953301 MsaT002307.1:CDS
TCGAGATTAGGGTCATTCGT+GGG 0.665810 1:+36952762 MsaT002307.1:CDS
TAAACCAGAACCCTATCATG+GGG 0.670255 1:+36951928 MsaT002307.1:CDS
TGTTGTGTTCATATCCATGA+GGG 0.680837 1:-36951716 None:intergenic
CGTGGGATGAAGTATGAAGG+GGG 0.704890 1:+36952779 MsaT002307.1:CDS
CTTTATCTGCGAGTATACCG+GGG 0.705407 1:+36953404 MsaT002307.1:CDS
GATGATATGGAATTGGACGA+TGG 0.705518 1:+36952623 MsaT002307.1:CDS
ATAATCAATACCGGCCATGG+AGG 0.709610 1:+36952653 MsaT002307.1:CDS
GTGGTTTCATAAGGGCTGCG+AGG 0.711383 1:+36952384 MsaT002307.1:CDS
ATTGCATATAGCATGAGACG+GGG 0.721884 1:-36953696 None:intergenic
TTGCATATAGCATGAGACGG+GGG 0.722787 1:-36953695 None:intergenic
TTGTTGTGTTCATATCCATG+AGG 0.736385 1:-36951717 None:intergenic
AAACCAGAACCCTATCATGG+GGG 0.762166 1:+36951929 MsaT002307.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 36951588 36953803 36951588 ID=MsaG002307
Chr1 mRNA 36951588 36953803 36951588 ID=MsaT002307.1;Parent=MsaG002307
Chr1 exon 36951588 36952820 36951588 ID=MsaT002307.1.exon1;Parent=MsaT002307.1
Chr1 CDS 36951588 36952820 36951588 ID=cds.MsaT002307.1;Parent=MsaT002307.1
Chr1 exon 36953135 36953803 36953135 ID=MsaT002307.1.exon2;Parent=MsaT002307.1
Chr1 CDS 36953135 36953803 36953135 ID=cds.MsaT002307.1;Parent=MsaT002307.1
Gene Sequence

>MsaT002307.1

ATGTCAACCCTCAATCCCCAAATCACTCCCATTTACACCGGAGCACCGCTTCAAACCATACTCGTCCCAAAACCTAAACCTTTTGAGGATTTCTTCACCACCCAAGGTTCCCAAAAACAACCTCATTTCCCTCATGGATATGAACACAACAATCAACCTCATTTCCCTCCTGGATATGAACACAAAAATCAATCAAACCTCTACACTGAGTACTACAACATTCCACAACCTTCCAATGCTACTTCCGATAAATCCCTTTATCATTTTCTCAAAATCGATGATTCCAACAATGCTTTTGCCGCTTCAATGGAGAACTCAGTCAATATTTCCGACCTTGGACTAAACCAGAACCCTATCATGGGGGTGGATTTTGTGGATGATAGAATTGATCAATCTATTGTGCCCATTTCAAAGAAACAAGAATCTTGTTCGACGGTAGCTATGGTTAAGAAAAAGGCAAGTCAGATGCTTGTGAGGGTTTCAGATCTGAGTATGAAGGATCAGATGCATCGCAACATGATGAGGAGAACAAGGATGACTTATGATTCGCTACGTGTGTTGGAAAGTATTGAGGATGAGAAAAGAATTATTGAGGAGAAGAAATTGGCTGATGAAGTTTTTGTGGAGGCAGTGAAGAGATTGGTTGAGGAGAATATGTTGGATGAGGATAGGATATTTGTTTCTGAAGTTGCGATTATGGAGATGGAGATGGGAGCTGGTGATGAGAACATGGAAGAGGTAGCAACAGGGGTGGAGGGGGAAATGTTGAATGGAAGAAGACATCATAATCATAGTCGTGGTTTCATAAGGGCTGCGAGGTTAATGAAGGACCGAAAGTTATGGTTGCATCGCGATAAAAGGATAGTTGGATCGATACCTGGAGTTTATGTTGGCGATGTTTTCTTGTATATGGTGGAATTATGTGTAATTGGTTTGCATATGCAGATACAAGCTGGCATTGATTTTCTTCCTAAAAGTAGGTCTTCCAATGGCGAGCCAATTGCTACTAGTGTGATTGTTTCAGGTGGTTATGAGGATGATATGGAATTGGACGATGGTGATGTAATAATCAATACCGGCCATGGAGGAAGAAAGAAGAATTCCTCAATTCAAATTTGTGATCAGAAATTAGAGGGTGGAAACCTTGCTTTGGAACGTAGTATGCATTACGGGATCGAGATTAGGGTCATTCGTGGGATGAAGTATGAAGGGGGTGCGTCTAGCTCTGGTAAGAGCGGGAAAGCTACTGGTTGTGAATGTGTGGAGGCTTGTACTGATGGCTGCTTTTGCTCTATGAAGAATGGAGGAGAGTTTCCCTATAATCTTCAGGGTTTGCTTGTGAAAGGGAAGCCTTTGGTTTTTGAATGTGGCCCTTTTTGCTCTTGTCCTCCCAATTGTCGGAATCGTGTTGCACAAAAGGGGATCAAGCATAGGTTGGAAGTGTTCAGGTCTGCGCAAACTGGTTGGGGAGTTAGGTCCTTGGATCTTATTCAGGCTGGAGCCTTTATCTGCGAGTATACCGGGGTAATTTTAACAAGGGAACAAGCTCAAATTTTAACAGTGAATGATGACTCGTTAATATATCCAAAACGGTTTATAGATAGATGGGCAGAATGGGGGGATTTGTCTCAGATATACAATAATTATGTTCGTCCATCATATCAATTAATACCTGATATAGATTATTCTATGGATATATCAACATTGCGAAATGTTGCTGGCTATATGAGCCATAGTTCGAGTCCAAATGTATTTGTTCAATTTGTTCTCTATGATCATAACAATCTGATGTTCCCCCGTCTCATGCTATATGCAATGGAGAACATCCCTCCATTGAGAGAACTCAGCATAGACTATGGCATCCCTGACGAGTGGGCGGGCAAGCTATCAATATGTATGTAA

Protein sequence

>MsaT002307.1

MSTLNPQITPIYTGAPLQTILVPKPKPFEDFFTTQGSQKQPHFPHGYEHNNQPHFPPGYEHKNQSNLYTEYYNIPQPSNATSDKSLYHFLKIDDSNNAFAASMENSVNISDLGLNQNPIMGVDFVDDRIDQSIVPISKKQESCSTVAMVKKKASQMLVRVSDLSMKDQMHRNMMRRTRMTYDSLRVLESIEDEKRIIEEKKLADEVFVEAVKRLVEENMLDEDRIFVSEVAIMEMEMGAGDENMEEVATGVEGEMLNGRRHHNHSRGFIRAARLMKDRKLWLHRDKRIVGSIPGVYVGDVFLYMVELCVIGLHMQIQAGIDFLPKSRSSNGEPIATSVIVSGGYEDDMELDDGDVIINTGHGGRKKNSSIQICDQKLEGGNLALERSMHYGIEIRVIRGMKYEGGASSSGKSGKATGCECVEACTDGCFCSMKNGGEFPYNLQGLLVKGKPLVFECGPFCSCPPNCRNRVAQKGIKHRLEVFRSAQTGWGVRSLDLIQAGAFICEYTGVILTREQAQILTVNDDSLIYPKRFIDRWAEWGDLSQIYNNYVRPSYQLIPDIDYSMDISTLRNVAGYMSHSSSPNVFVQFVLYDHNNLMFPRLMLYAMENIPPLRELSIDYGIPDEWAGKLSICM*