AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG002310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG002310 MtrunA17_Chr4g0020221 52.675 243 102 6 1 232 1 241 1.17e-65 204
MsaG002310 MtrunA17_Chr2g0279821 37.398 246 121 4 1 221 1 238 2.37e-41 141
MsaG002310 MtrunA17_Chr4g0057151 45.977 174 90 2 1 174 1 170 3.48e-39 135
MsaG002310 MtrunA17_Chr4g0049541 38.426 216 100 5 1 197 1 202 4.27e-39 135
MsaG002310 MtrunA17_Chr7g0246431 45.665 173 90 1 1 173 1 169 4.41e-39 135
MsaG002310 MtrunA17_Chr8g0351051 44.262 183 84 3 1 176 1 172 1.28e-38 135
MsaG002310 MtrunA17_Chr5g0420091 43.407 182 92 4 1 178 1 175 1.33e-37 131
MsaG002310 MtrunA17_Chr3g0077501 41.573 178 100 1 1 178 1 174 2.79e-37 130
MsaG002310 MtrunA17_Chr2g0284911 41.622 185 88 2 1 177 16 188 3.56e-37 131
MsaG002310 MtrunA17_Chr6g0455511 38.912 239 120 8 1 229 1 223 5.43e-37 130
MsaG002310 MtrunA17_Chr3g0097101 41.808 177 99 1 1 177 16 188 5.66e-37 130
MsaG002310 MtrunA17_Chr7g0220111 37.548 261 121 8 1 248 1 232 6.02e-37 130
MsaG002310 MtrunA17_Chr8g0380021 42.373 177 98 2 1 177 17 189 1.36e-36 129
MsaG002310 MtrunA17_Chr1g0173161 96.774 62 2 0 1 62 1 62 1.55e-36 124
MsaG002310 MtrunA17_Chr5g0412271 44.865 185 92 5 1 182 1 178 3.73e-36 127
MsaG002310 MtrunA17_Chr5g0411691 42.675 157 80 2 1 155 1 149 3.83e-36 128
MsaG002310 MtrunA17_Chr5g0420081 37.037 243 128 5 1 227 1 234 2.77e-35 125
MsaG002310 MtrunA17_Chr5g0412461 38.793 232 124 4 1 223 1 223 2.83e-35 125
MsaG002310 MtrunA17_Chr4g0061691 44.767 172 85 3 1 166 1 168 4.20e-35 125
MsaG002310 MtrunA17_Chr8g0351031 42.690 171 95 2 1 171 1 168 4.61e-35 125
MsaG002310 MtrunA17_Chr3g0122251 44.022 184 87 5 1 176 1 176 5.47e-35 125
MsaG002310 MtrunA17_Chr4g0049901 37.778 225 122 8 1 223 27 235 1.25e-34 124
MsaG002310 MtrunA17_Chr4g0061671 40.212 189 103 5 1 187 1 181 4.19e-34 121
MsaG002310 MtrunA17_Chr5g0427401 38.362 232 123 7 1 223 1 221 7.11e-34 122
MsaG002310 MtrunA17_Chr1g0164791 34.016 244 118 9 1 215 1 230 4.19e-33 120
MsaG002310 MtrunA17_Chr8g0351041 43.506 154 84 2 1 154 1 151 8.82e-33 117
MsaG002310 MtrunA17_Chr4g0018421 37.173 191 112 4 1 189 1 185 1.13e-31 115
MsaG002310 MtrunA17_Chr8g0366231 42.197 173 88 4 1 166 1 168 1.54e-31 116
MsaG002310 MtrunA17_Chr7g0220121 41.667 168 86 4 1 162 1 162 1.49e-29 111
MsaG002310 MtrunA17_Chr1g0204111 39.362 188 101 5 1 185 17 194 3.54e-29 110
MsaG002310 MtrunA17_Chr3g0125241 41.060 151 78 4 1 149 26 167 1.69e-28 107
MsaG002310 MtrunA17_Chr5g0427921 73.333 60 16 0 1 60 1 60 2.12e-27 100
MsaG002310 MtrunA17_Chr6g0474371 41.667 168 73 4 1 155 1 156 7.25e-27 102
MsaG002310 MtrunA17_Chr2g0308251 66.667 69 23 0 1 69 1 69 2.50e-26 98.2
MsaG002310 MtrunA17_Chr3g0142191 38.750 160 87 5 1 158 1 151 3.25e-26 102
MsaG002310 MtrunA17_Chr7g0246381 73.770 61 16 0 1 61 1 61 6.87e-26 96.7
MsaG002310 MtrunA17_Chr1g0159661 39.735 151 80 3 1 149 1 142 1.02e-25 99.4
MsaG002310 MtrunA17_Chr8g0377561 77.586 58 13 0 1 58 1 58 1.67e-25 96.3
MsaG002310 MtrunA17_Chr1g0166611 85.417 48 7 0 13 60 17 64 3.72e-23 91.3
MsaG002310 MtrunA17_Chr3g0134451 38.462 169 81 4 1 146 1 169 1.02e-21 92.0
MsaG002310 MtrunA17_Chr5g0404951 33.149 181 114 2 1 179 1 176 2.24e-21 89.4
MsaG002310 MtrunA17_Chr5g0425191 65.517 58 20 0 1 58 1 58 1.79e-20 83.6
MsaG002310 MtrunA17_Chr4g0044071 63.793 58 21 0 1 58 1 58 8.53e-20 82.0
MsaG002310 MtrunA17_Chr8g0355091 33.133 166 94 4 2 152 9 172 8.82e-20 85.1
MsaG002310 MtrunA17_Chr8g0379021 50.685 73 36 0 2 74 12 84 8.97e-19 80.9
MsaG002310 MtrunA17_Chr1g0208561 51.471 68 33 0 2 69 9 76 1.57e-18 81.6
MsaG002310 MtrunA17_Chr8g0376821 50.725 69 34 0 1 69 1 69 1.84e-18 80.5
MsaG002310 MtrunA17_Chr3g0089141 48.101 79 41 0 2 80 9 87 1.88e-18 81.3
MsaG002310 MtrunA17_Chr3g0099421 55.882 68 30 0 2 69 34 101 2.84e-18 81.6
MsaG002310 MtrunA17_Chr2g0292791 50.000 78 39 0 2 79 9 86 3.56e-18 80.9
MsaG002310 MtrunA17_Chr1g0208581 51.471 68 33 0 2 69 9 76 3.86e-18 80.5
MsaG002310 MtrunA17_Chr1g0169761 50.725 69 34 0 1 69 1 69 4.30e-18 79.3
MsaG002310 MtrunA17_Chr4g0052081 34.532 139 89 1 1 137 1 139 4.62e-18 79.3
MsaG002310 MtrunA17_Chr1g0206991 49.367 79 40 0 2 80 9 87 6.20e-18 79.0
MsaG002310 MtrunA17_Chr8g0357771 45.570 79 43 0 1 79 1 79 8.02e-18 78.6
MsaG002310 MtrunA17_Chr2g0325971 50.000 68 34 0 2 69 9 76 8.83e-18 79.7
MsaG002310 MtrunA17_Chr3g0099411 48.101 79 41 0 2 80 9 87 1.59e-17 78.6
MsaG002310 MtrunA17_Chr2g0333981 51.389 72 35 0 1 72 11 82 1.61e-17 77.8
MsaG002310 MtrunA17_Chr5g0419601 55.072 69 31 0 1 69 8 76 1.64e-17 79.0
MsaG002310 MtrunA17_Chr1g0206701 31.461 178 97 5 2 160 9 180 1.95e-17 79.0
MsaG002310 MtrunA17_Chr1g0206721 48.101 79 41 0 2 80 9 87 2.08e-17 78.6
MsaG002310 MtrunA17_Chr1g0175611 47.826 69 36 0 1 69 1 69 2.47e-17 77.0
MsaG002310 MtrunA17_Chr2g0317451 54.412 68 31 0 2 69 9 76 2.70e-17 78.6
MsaG002310 MtrunA17_Chr2g0317481 54.412 68 31 0 2 69 9 76 2.87e-17 78.2
MsaG002310 MtrunA17_Chr1g0188671 50.000 78 39 0 2 79 47 124 2.93e-17 79.0
MsaG002310 MtrunA17_Chr1g0180591 46.377 69 37 0 1 69 1 69 3.44e-17 77.0
MsaG002310 MtrunA17_Chr4g0074101 47.826 69 36 0 1 69 1 69 6.74e-17 76.6
MsaG002310 MtrunA17_Chr8g0356071 44.186 86 46 1 1 86 1 84 6.83e-17 75.5
MsaG002310 MtrunA17_Chr1g0149391 52.941 68 32 0 2 69 9 76 1.06e-16 76.6
MsaG002310 MtrunA17_Chr1g0187361 51.471 68 33 0 2 69 9 76 1.38e-16 76.6
MsaG002310 MtrunA17_Chr4g0052061 47.222 72 38 0 1 72 1 72 2.46e-16 73.9
MsaG002310 MtrunA17_Chr5g0422941 52.941 68 32 0 2 69 9 76 2.73e-16 75.5
MsaG002310 MtrunA17_Chr1g0175601 47.826 69 36 0 1 69 1 69 2.95e-16 74.3
MsaG002310 MtrunA17_Chr4g0060841 48.611 72 35 1 1 70 1 72 3.60e-16 77.0
MsaG002310 MtrunA17_Chr5g0422421 52.941 68 32 0 2 69 9 76 5.70e-16 74.7
MsaG002310 MtrunA17_Chr3g0119901 47.826 69 36 0 1 69 8 76 1.37e-15 73.2
MsaG002310 MtrunA17_Chr2g0300441 39.806 103 59 2 2 102 7 108 4.47e-15 72.4
MsaG002310 MtrunA17_Chr3g0085241 46.377 69 37 0 1 69 40 108 5.09e-15 72.4
MsaG002310 MtrunA17_Chr2g0300421 47.059 68 36 0 2 69 9 76 5.10e-15 70.9
MsaG002310 MtrunA17_Chr5g0417661 52.830 53 25 0 1 53 56 108 8.35e-15 69.3
MsaG002310 MtrunA17_Chr3g0089151 45.588 68 37 0 2 69 9 76 8.87e-15 69.3
MsaG002310 MtrunA17_Chr4g0018951 53.571 56 26 0 16 71 26 81 1.44e-14 69.7
MsaG002310 MtrunA17_Chr3g0111841 50.847 59 29 0 8 66 2 60 4.07e-12 60.5
MsaG002310 MtrunA17_Chr1g0212151 28.902 173 91 7 1 155 1 159 6.10e-12 64.7
MsaG002310 MtrunA17_Chr1g0206691 45.763 59 32 0 11 69 1 59 8.45e-12 62.8
MsaG002310 MtrunA17_Chr1g0187351 45.763 59 32 0 11 69 1 59 2.13e-11 58.2
MsaG002310 MtrunA17_Chr4g0071601 50.000 72 36 0 1 72 11 82 2.17e-11 61.2
MsaG002310 MtrunA17_Chr6g0457851 51.020 49 24 0 1 49 11 59 4.19e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG002310 AT3G57390.1 46.617 266 113 7 1 248 1 255 3.46e-61 193
MsaG002310 AT5G13790.1 46.371 248 115 7 1 242 1 236 1.23e-60 192
MsaG002310 AT5G13790.2 46.774 248 117 7 1 242 1 239 1.65e-60 192
MsaG002310 AT3G57390.3 51.366 183 78 2 1 176 1 179 1.12e-53 173
MsaG002310 AT3G57230.1 40.254 236 124 6 1 230 1 225 1.27e-40 140
MsaG002310 AT3G57230.4 40.254 236 124 6 1 230 1 225 1.27e-40 140
MsaG002310 AT2G45650.1 38.077 260 126 7 1 243 1 242 4.78e-40 139
MsaG002310 AT3G61120.1 40.081 247 106 8 1 229 1 223 9.54e-40 138
MsaG002310 AT4G24540.1 40.889 225 126 4 1 225 1 218 4.24e-39 135
MsaG002310 AT4G22950.2 44.318 176 93 1 1 176 1 171 1.16e-38 133
MsaG002310 AT3G57230.2 48.000 150 73 1 1 150 1 145 1.54e-38 132
MsaG002310 AT2G22630.1 45.806 155 79 2 1 155 1 150 2.04e-38 134
MsaG002310 AT2G22630.2 45.806 155 79 2 1 155 1 150 2.04e-38 134
MsaG002310 AT3G58780.1 43.478 184 86 2 1 177 16 188 3.05e-38 134
MsaG002310 AT3G58780.5 43.478 184 86 3 1 177 22 194 3.95e-38 134
MsaG002310 AT5G51870.1 43.333 180 95 3 1 180 1 173 1.58e-37 131
MsaG002310 AT2G42830.2 43.011 186 86 4 1 177 16 190 1.78e-37 132
MsaG002310 AT2G42830.1 42.935 184 87 3 1 177 16 188 1.86e-37 132
MsaG002310 AT4G22950.3 44.571 175 92 1 1 175 1 170 1.88e-37 131
MsaG002310 AT4G22950.1 44.571 175 92 1 1 175 1 170 1.88e-37 131
MsaG002310 AT4G37940.1 35.714 238 126 7 1 228 1 221 1.95e-37 131
MsaG002310 AT4G09960.6 40.449 178 102 1 1 178 2 175 2.27e-37 131
MsaG002310 AT4G09960.1 40.449 178 102 1 1 178 1 174 2.34e-37 131
MsaG002310 AT4G09960.5 40.449 178 102 1 1 178 11 184 3.52e-37 131
MsaG002310 AT4G09960.3 40.449 178 102 1 1 178 27 200 7.91e-37 130
MsaG002310 AT5G51870.4 41.520 171 97 1 1 171 1 168 1.65e-36 129
MsaG002310 AT4G09960.4 41.758 182 98 2 1 178 96 273 2.64e-36 131
MsaG002310 AT5G51870.3 41.520 171 97 1 1 171 11 178 3.60e-36 128
MsaG002310 AT2G45660.1 41.520 171 96 1 1 171 1 167 3.92e-36 127
MsaG002310 AT4G09960.2 44.898 147 77 1 1 147 1 143 1.03e-35 126
MsaG002310 AT4G18960.1 39.474 190 109 2 2 191 18 201 1.21e-35 127
MsaG002310 AT3G58780.4 48.366 153 61 2 1 146 16 157 1.89e-35 127
MsaG002310 AT2G22540.3 44.633 177 88 5 1 174 1 170 6.10e-35 125
MsaG002310 AT2G22540.1 44.633 177 88 5 1 174 1 170 6.10e-35 125
MsaG002310 AT1G26310.1 39.899 198 114 3 1 196 1 195 7.37e-35 125
MsaG002310 AT1G24260.2 44.865 185 86 5 1 177 1 177 9.20e-35 125
MsaG002310 AT2G45660.2 42.857 154 84 1 1 154 1 150 9.80e-35 122
MsaG002310 AT3G58780.2 41.304 184 83 2 1 177 16 181 1.32e-34 124
MsaG002310 AT5G51870.2 43.137 153 84 1 1 153 1 150 1.54e-34 122
MsaG002310 AT4G37940.3 42.208 154 78 3 1 151 1 146 2.06e-34 122
MsaG002310 AT4G37940.4 40.571 175 97 4 1 174 1 169 2.19e-34 123
MsaG002310 AT5G51870.5 43.137 153 84 1 1 153 24 173 2.85e-34 122
MsaG002310 AT1G24260.1 43.575 179 96 3 1 177 1 176 3.62e-34 124
MsaG002310 AT1G24260.3 48.148 162 68 5 1 154 1 154 5.03e-34 123
MsaG002310 AT5G60910.1 43.316 187 83 7 1 177 1 174 5.34e-34 123
MsaG002310 AT5G62165.3 43.275 171 93 2 1 171 1 167 7.10e-34 122
MsaG002310 AT5G62165.1 43.275 171 93 2 1 171 1 167 7.10e-34 122
MsaG002310 AT5G62165.2 43.275 171 93 2 1 171 1 167 7.10e-34 122
MsaG002310 AT5G15800.1 43.617 188 91 4 1 182 1 179 1.51e-33 122
MsaG002310 AT5G15800.2 43.617 188 91 4 1 182 1 179 2.34e-33 122
MsaG002310 AT5G62165.17 44.872 156 82 2 1 156 1 152 3.40e-33 118
MsaG002310 AT5G62165.12 44.872 156 82 2 1 156 1 152 3.40e-33 118
MsaG002310 AT5G62165.11 44.872 156 82 2 1 156 1 152 3.40e-33 118
MsaG002310 AT4G11880.2 48.052 154 74 2 1 153 1 149 4.33e-33 119
MsaG002310 AT4G11880.3 48.052 154 74 2 1 153 1 149 4.33e-33 119
MsaG002310 AT2G03710.2 39.560 182 97 3 1 177 1 174 6.62e-33 120
MsaG002310 AT2G03710.1 39.560 182 97 3 1 177 1 174 7.53e-33 120
MsaG002310 AT3G58780.3 38.278 209 86 4 1 177 16 213 8.23e-33 120
MsaG002310 AT4G11880.4 44.633 177 92 2 1 176 1 172 2.29e-32 118
MsaG002310 AT4G11880.1 44.633 177 92 2 1 176 1 172 2.29e-32 118
MsaG002310 AT2G03710.3 38.889 180 97 3 1 175 1 172 3.86e-32 116
MsaG002310 AT3G02310.1 43.085 188 92 4 1 182 1 179 3.95e-32 118
MsaG002310 AT5G51860.1 38.043 184 99 4 1 179 1 174 6.58e-32 116
MsaG002310 AT2G14210.1 38.863 211 103 7 1 201 1 195 9.13e-32 117
MsaG002310 AT2G14210.2 38.863 211 103 7 1 201 1 195 9.87e-32 117
MsaG002310 AT5G51860.2 40.120 167 87 3 1 162 1 159 1.39e-31 115
MsaG002310 AT5G62165.6 44.156 154 82 2 1 154 1 150 4.30e-31 112
MsaG002310 AT5G62165.9 44.156 154 82 2 1 154 1 150 4.30e-31 112
MsaG002310 AT5G62165.7 44.156 154 82 2 1 154 1 150 4.30e-31 112
MsaG002310 AT5G62165.8 44.156 154 82 2 1 154 1 150 4.30e-31 112
MsaG002310 AT5G62165.13 44.156 154 82 2 1 154 1 150 4.30e-31 112
MsaG002310 AT5G62165.10 45.098 153 80 2 1 153 1 149 6.01e-31 114
MsaG002310 AT5G62165.4 45.098 153 80 2 1 153 1 149 6.01e-31 114
MsaG002310 AT3G02310.2 44.068 177 84 4 1 171 1 168 6.53e-31 114
MsaG002310 AT3G30260.1 38.750 160 83 3 1 154 1 151 1.52e-30 114
MsaG002310 AT1G69120.2 40.223 179 100 4 1 177 1 174 6.21e-30 112
MsaG002310 AT1G69120.1 40.223 179 100 4 1 177 1 174 1.49e-29 112
MsaG002310 AT2G22540.2 42.373 177 87 6 1 174 1 165 1.56e-29 111
MsaG002310 AT5G62165.14 72.464 69 19 0 1 69 1 69 4.47e-29 106
MsaG002310 AT5G23260.2 39.766 171 92 4 1 169 1 162 2.80e-28 108
MsaG002310 AT5G65070.1 38.251 183 86 4 1 175 1 164 3.31e-28 107
MsaG002310 AT5G23260.4 39.766 171 92 4 1 169 17 178 4.31e-28 108
MsaG002310 AT5G23260.3 41.279 172 88 5 1 167 1 164 4.38e-28 107
MsaG002310 AT5G23260.1 40.110 182 85 5 1 167 17 189 6.92e-28 107
MsaG002310 AT5G20240.1 40.132 152 80 4 1 150 1 143 9.72e-28 105
MsaG002310 AT5G20240.2 41.096 146 75 4 1 144 1 137 1.22e-27 103
MsaG002310 AT5G65070.4 40.397 151 77 3 1 150 1 139 1.09e-25 98.6
MsaG002310 AT1G71692.1 40.659 182 102 4 1 177 1 181 1.48e-25 100
MsaG002310 AT5G65070.2 36.667 210 83 6 1 175 1 195 1.94e-25 100
MsaG002310 AT5G65060.3 34.270 178 100 3 1 175 1 164 2.98e-24 96.3
MsaG002310 AT5G65070.5 40.000 190 73 9 1 167 1 172 3.38e-24 96.7
MsaG002310 AT5G65070.3 34.848 198 104 5 1 175 1 196 4.92e-24 96.7
MsaG002310 AT5G65060.1 34.659 176 102 4 1 175 1 164 6.58e-24 95.5
MsaG002310 AT5G10140.2 61.972 71 26 1 1 70 1 71 7.87e-24 94.4
MsaG002310 AT5G65050.2 34.426 183 93 4 1 175 1 164 9.41e-24 94.7
MsaG002310 AT5G10140.3 61.972 71 26 1 1 70 1 71 1.13e-23 94.7
MsaG002310 AT5G10140.4 61.972 71 26 1 1 70 1 71 1.15e-23 94.4
MsaG002310 AT5G10140.1 61.972 71 26 1 1 70 1 71 1.36e-23 94.7
MsaG002310 AT5G65050.3 34.426 183 93 4 1 175 1 164 3.72e-23 93.6
MsaG002310 AT5G65050.5 41.611 149 70 3 1 137 1 144 4.62e-23 92.8
MsaG002310 AT5G65080.3 36.310 168 70 6 1 155 8 151 8.27e-23 92.4
MsaG002310 AT5G65050.1 35.583 163 78 4 1 155 1 144 1.04e-22 92.0
MsaG002310 AT3G54340.1 36.875 160 90 4 1 158 1 151 4.48e-22 91.7
MsaG002310 AT1G77980.1 34.146 205 94 8 1 165 1 204 1.06e-21 92.4
MsaG002310 AT5G65060.2 35.955 178 86 5 1 175 1 153 1.80e-21 89.0
MsaG002310 AT3G57390.2 41.667 156 73 5 104 248 46 194 1.85e-21 89.0
MsaG002310 AT1G22130.1 59.722 72 28 1 1 71 1 72 5.18e-21 90.5
MsaG002310 AT5G65080.2 35.484 155 88 2 1 155 8 150 1.59e-20 86.7
MsaG002310 AT1G77080.5 35.955 178 101 2 1 177 1 166 2.78e-19 82.8
MsaG002310 AT1G77080.2 35.714 182 88 3 1 175 1 160 3.77e-19 82.8
MsaG002310 AT1G01530.1 35.135 185 87 6 1 179 6 163 1.18e-18 82.8
MsaG002310 AT1G77080.11 35.227 176 101 2 1 175 1 164 1.46e-18 80.9
MsaG002310 AT1G77080.12 37.736 159 70 3 1 152 1 137 3.14e-18 79.3
MsaG002310 AT1G77080.4 35.227 176 101 2 1 175 1 164 3.87e-18 80.1
MsaG002310 AT1G77080.8 34.031 191 110 3 1 175 1 191 5.02e-18 80.5
MsaG002310 AT1G77950.3 51.389 72 34 1 1 71 1 72 1.25e-17 80.1
MsaG002310 AT1G77950.2 51.389 72 34 1 1 71 1 72 1.25e-17 80.1
MsaG002310 AT1G77950.1 51.389 72 34 1 1 71 1 72 1.25e-17 80.1
MsaG002310 AT1G77950.4 51.389 72 34 1 1 71 1 72 1.25e-17 80.1
MsaG002310 AT1G31140.2 38.158 152 89 4 1 150 1 149 2.38e-17 78.6
MsaG002310 AT1G69540.2 27.203 261 140 9 1 216 1 256 2.44e-17 80.5
MsaG002310 AT1G69540.1 27.203 261 140 9 1 216 1 256 2.53e-17 80.5
MsaG002310 AT1G31140.1 56.338 71 29 1 1 69 1 71 6.38e-17 77.4
MsaG002310 AT1G18750.1 47.222 72 36 1 1 70 1 72 7.10e-17 79.3
MsaG002310 AT1G18750.4 47.222 72 36 1 1 70 1 72 7.31e-17 79.3
MsaG002310 AT2G03060.3 52.113 71 32 1 1 69 1 71 8.18e-17 79.3
MsaG002310 AT2G03060.7 52.113 71 32 1 1 69 1 71 8.18e-17 79.3
MsaG002310 AT2G03060.1 52.113 71 32 1 1 69 1 71 8.18e-17 79.3
MsaG002310 AT2G03060.2 52.113 71 32 1 1 69 1 71 9.16e-17 79.3
MsaG002310 AT1G18750.3 47.222 72 36 1 1 70 1 72 9.56e-17 79.3
MsaG002310 AT2G34440.1 43.478 69 39 0 1 69 1 69 9.62e-17 75.9
MsaG002310 AT4G36590.1 52.857 70 33 0 2 71 7 76 1.96e-16 76.6
MsaG002310 AT3G66656.1 46.479 71 38 0 1 71 1 71 3.09e-16 74.7
MsaG002310 AT5G60440.1 50.000 70 35 0 2 71 7 76 7.12e-16 75.9
MsaG002310 AT1G29962.1 52.113 71 34 0 2 72 8 78 8.51e-16 73.6
MsaG002310 AT3G04100.1 47.143 70 37 0 2 71 14 83 8.82e-16 73.9
MsaG002310 AT1G28460.1 53.521 71 33 0 2 72 8 78 1.34e-15 73.2
MsaG002310 AT2G24840.1 49.275 69 35 0 1 69 62 130 2.28e-15 73.9
MsaG002310 AT1G65360.1 42.308 78 45 0 1 78 6 83 2.67e-15 73.2
MsaG002310 AT4G37435.1 48.571 70 35 1 1 69 1 70 3.52e-15 72.0
MsaG002310 AT1G72350.1 55.000 60 27 0 2 61 43 102 5.51e-14 69.3
MsaG002310 AT1G47760.1 46.479 71 38 0 1 71 1 71 9.63e-14 68.2
MsaG002310 AT1G28450.1 49.296 71 36 0 2 72 8 78 1.43e-13 67.4
MsaG002310 AT2G26320.1 46.269 67 35 1 1 66 17 83 2.21e-12 62.4

Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGGTACTGCAGTTCTTTA+AGG 0.177213 1:-37079910 None:intergenic
CTTCACGGAGTTGATGTTCT+AGG 0.314940 1:-37079928 None:intergenic
AGATTGAGAATTTGAATAAC+AGG 0.317778 1:+37078282 MsaT002310.1:CDS
GGAGGCCTTGGTTTGAATAA+TGG 0.321192 1:+37079082 MsaT002310.1:CDS
TCAGATACTTCCTTGCAGTT+AGG 0.341704 1:+37082708 MsaT002310.1:CDS
GTTGCTGTTATCATATATTC+TGG 0.356858 1:+37078380 MsaT002310.1:CDS
ACAAAGAACAGACAACTCTT+TGG 0.361038 1:-37078348 None:intergenic
ACTTAAGAGATCCAGGTTAC+AGG 0.376681 1:+37081836 MsaT002310.1:CDS
CAGATACTTCCTTGCAGTTA+GGG 0.407971 1:+37082709 MsaT002310.1:CDS
GAGCAAACCATTGCGTCTCT+TGG 0.421581 1:-37078318 None:intergenic
AGGTACGGTAACGGAGGCCT+TGG 0.428686 1:+37079070 MsaT002310.1:CDS
CTGTGGTAGAGGCTGATCAC+TGG 0.430009 1:-37079122 None:intergenic
TTATGATATGCAGGAGCAAA+AGG 0.449428 1:+37082388 MsaT002310.1:intron
CTGAACAACTTAAGAGATCC+AGG 0.452542 1:+37081829 MsaT002310.1:CDS
CGGTAAGGAGCTTGATGGAT+TGG 0.460269 1:+37079886 MsaT002310.1:CDS
TTTGAATAATGGAGCAGAGC+TGG 0.462262 1:+37079093 MsaT002310.1:CDS
GGTAAGGAGCTTGATGGATT+GGG 0.465138 1:+37079887 MsaT002310.1:CDS
GCAGGAGCAAAAGGCTATGA+TGG 0.488381 1:+37082397 MsaT002310.1:intron
TTGAATTTCATCCATTGCAT+AGG 0.489869 1:+37082625 MsaT002310.1:CDS
TGACAGCTGATATCCCTTCA+CGG 0.491805 1:-37079943 None:intergenic
ATGAGCGGTAAGGAGCTTGA+TGG 0.495202 1:+37079881 MsaT002310.1:CDS
TCTAAAGCATAATTGAAAGC+AGG 0.504637 1:-37082672 None:intergenic
TGTTATTTCTTCCTGCAGAA+TGG 0.505153 1:-37079619 None:intergenic
AAGAAGAAGAGAATGGGGAG+AGG 0.505861 1:+37078242 None:intergenic
TGACTCCCCGAGTTGTTGCT+AGG 0.513833 1:-37083384 None:intergenic
GTTATCATATATTCTGGCAC+TGG 0.530253 1:+37078386 MsaT002310.1:CDS
CATAGGACAATTTCAATCAA+CGG 0.530964 1:+37082642 MsaT002310.1:CDS
GTCTGTTCTTTGTGATGCAG+AGG 0.533008 1:+37078358 MsaT002310.1:CDS
GCATGGAGCACACTATTTCA+AGG 0.536723 1:+37079050 MsaT002310.1:intron
AAAATACGTACCTGTGGTAG+AGG 0.539197 1:-37079133 None:intergenic
TGTGGTAGAGGCTGATCACT+GGG 0.539369 1:-37079121 None:intergenic
GCTTGATACTACCATTCTGC+AGG 0.545429 1:+37079608 MsaT002310.1:CDS
ATTGAAATTGTCCTATGCAA+TGG 0.563943 1:-37082636 None:intergenic
GATAGAACCTAGCAACAACT+CGG 0.564795 1:+37083377 MsaT002310.1:CDS
TAGAACATCAACTCCGTGAA+GGG 0.574021 1:+37079930 MsaT002310.1:CDS
CATCAGATTATGATCACAAG+AGG 0.588024 1:+37083343 MsaT002310.1:CDS
GTGCAGAAGAATGAGCGGTA+AGG 0.590013 1:+37079871 MsaT002310.1:intron
ATAGAACCTAGCAACAACTC+GGG 0.590238 1:+37083378 MsaT002310.1:CDS
GATGTCATGTACCTGTAACC+TGG 0.598214 1:-37081847 None:intergenic
CAGTGATCAGCCTCTACCAC+AGG 0.608508 1:+37079123 MsaT002310.1:CDS
CTAGAACATCAACTCCGTGA+AGG 0.619213 1:+37079929 MsaT002310.1:CDS
ACTATTTCAAGGTACGGTAA+CGG 0.626722 1:+37079061 MsaT002310.1:CDS
GAGCACACTATTTCAAGGTA+CGG 0.630564 1:+37079055 MsaT002310.1:CDS
CTGCTCCATTATTCAAACCA+AGG 0.641459 1:-37079087 None:intergenic
TAGAACCTAGCAACAACTCG+GGG 0.669340 1:+37083379 MsaT002310.1:CDS
GCATACATACCCTAACTGCA+AGG 0.669737 1:-37082718 None:intergenic
AAATTGTGCAGAAGAATGAG+CGG 0.689002 1:+37079866 MsaT002310.1:intron
ATTTCAAGGTACGGTAACGG+AGG 0.726213 1:+37079064 MsaT002310.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 37078254 37083422 37078254 ID=MsaG002310
Chr1 mRNA 37078254 37083422 37078254 ID=MsaT002310.1;Parent=MsaG002310
Chr1 exon 37078254 37078435 37078254 ID=MsaT002310.1.exon1;Parent=MsaT002310.1
Chr1 CDS 37078254 37078435 37078254 ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1 exon 37079051 37079144 37079051 ID=MsaT002310.1.exon2;Parent=MsaT002310.1
Chr1 CDS 37079051 37079144 37079051 ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1 exon 37079600 37079661 37079600 ID=MsaT002310.1.exon3;Parent=MsaT002310.1
Chr1 CDS 37079600 37079661 37079600 ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1 exon 37079877 37079976 37079877 ID=MsaT002310.1.exon4;Parent=MsaT002310.1
Chr1 CDS 37079877 37079976 37079877 ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1 exon 37081816 37081857 37081816 ID=MsaT002310.1.exon5;Parent=MsaT002310.1
Chr1 CDS 37081816 37081857 37081816 ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1 exon 37082401 37082442 37082401 ID=MsaT002310.1.exon6;Parent=MsaT002310.1
Chr1 CDS 37082401 37082442 37082401 ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1 exon 37082588 37082730 37082588 ID=MsaT002310.1.exon7;Parent=MsaT002310.1
Chr1 CDS 37082588 37082730 37082588 ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1 exon 37083338 37083422 37083338 ID=MsaT002310.1.exon8;Parent=MsaT002310.1
Chr1 CDS 37083338 37083422 37083338 ID=cds.MsaT002310.1;Parent=MsaT002310.1
Gene Sequence

>MsaT002310.1

ATGGGGAGAGGAAAGATTGAGATTAAGAAGATTGAGAATTTGAATAACAGGCAAGTTACATTTTCCAAGAGACGCAATGGTTTGCTCAAGAAAGCCAAAGAGTTGTCTGTTCTTTGTGATGCAGAGGTTGCTGTTATCATATATTCTGGCACTGGCAAGCTTTATGAGTTTTCAAGCACAAGCATGGAGCACACTATTTCAAGGTACGGTAACGGAGGCCTTGGTTTGAATAATGGAGCAGAGCTGGAACAACCCAGTGATCAGCCTCTACCACAGGTTGTGGAGCTTGATACTACCATTCTGCAGGAAGAAATAACAAAACTTCGTTCAGCTTACTTAAGAATGAGCGGTAAGGAGCTTGATGGATTGGGCCTTAAAGAACTGCAGTACCTAGAACATCAACTCCGTGAAGGGATATCAGCTGTCAAAAATAAGAAGGAACAAGTGCTTGCTGAACAACTTAAGAGATCCAGGTTACAGGAGCAAAAGGCTATGATGGAGAATGAAGCTCTTCGCAAACAACTTGAGGAGATAGTAAATAAAAGAAAGACAGAGTTCATTGAATTTCATCCATTGCATAGGACAATTTCAATCAACGGTTCAAAACCTGCTTTCAATTATGCTTTAGAGAGTAACAAGATTTCAGATACTTCCTTGCAGTTAGGGTTGTCATCAGATTATGATCACAAGAGGAAAGAATGCAAGATAGAACCTAGCAACAACTCGGGGAGTCAAGTTGCTTCACAGTGA
Protein sequence

>MsaT002310.1

MGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIYSGTGKLYEFSSTSMEHTISRYGNGGLGLNNGAELEQPSDQPLPQVVELDTTILQEEITKLRSAYLRMSGKELDGLGLKELQYLEHQLREGISAVKNKKEQVLAEQLKRSRLQEQKAMMENEALRKQLEEIVNKRKTEFIEFHPLHRTISINGSKPAFNYALESNKISDTSLQLGLSSDYDHKRKECKIEPSNNSGSQVASQ*