AlfalfaGEDB | MsaG002310

M. sativa ssp. caerulea / MsaG002310

KEGG: K09260
GO: GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048519 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002310	XP_013467596.1	95.582	249	11	0	1	249	1	249	9.64e-170	478

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002310	sp\|Q9M2K8\|AGL18_ARATH	46.617	266	113	7	1	248	1	255	3.40e-60	193

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002310	tr\|A0A072VJL7\|A0A072VJL7_MEDTR	95.582	249	11	0	1	249	1	249	4.61e-170	478

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TFs/TRs:

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Gene ID	Type	Classification
MsaG002310	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002310	MtrunA17_Chr4g0020221	52.675	243	102	6	1	232	1	241	1.17e-65	204
MsaG002310	MtrunA17_Chr2g0279821	37.398	246	121	4	1	221	1	238	2.37e-41	141
MsaG002310	MtrunA17_Chr4g0057151	45.977	174	90	2	1	174	1	170	3.48e-39	135
MsaG002310	MtrunA17_Chr4g0049541	38.426	216	100	5	1	197	1	202	4.27e-39	135
MsaG002310	MtrunA17_Chr7g0246431	45.665	173	90	1	1	173	1	169	4.41e-39	135
MsaG002310	MtrunA17_Chr8g0351051	44.262	183	84	3	1	176	1	172	1.28e-38	135
MsaG002310	MtrunA17_Chr5g0420091	43.407	182	92	4	1	178	1	175	1.33e-37	131
MsaG002310	MtrunA17_Chr3g0077501	41.573	178	100	1	1	178	1	174	2.79e-37	130
MsaG002310	MtrunA17_Chr2g0284911	41.622	185	88	2	1	177	16	188	3.56e-37	131
MsaG002310	MtrunA17_Chr6g0455511	38.912	239	120	8	1	229	1	223	5.43e-37	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002310	AT3G57390.1	46.617	266	113	7	1	248	1	255	3.46e-61	193
MsaG002310	AT5G13790.1	46.371	248	115	7	1	242	1	236	1.23e-60	192
MsaG002310	AT5G13790.2	46.774	248	117	7	1	242	1	239	1.65e-60	192
MsaG002310	AT3G57390.3	51.366	183	78	2	1	176	1	179	1.12e-53	173
MsaG002310	AT3G57230.1	40.254	236	124	6	1	230	1	225	1.27e-40	140
MsaG002310	AT3G57230.4	40.254	236	124	6	1	230	1	225	1.27e-40	140
MsaG002310	AT2G45650.1	38.077	260	126	7	1	243	1	242	4.78e-40	139
MsaG002310	AT3G61120.1	40.081	247	106	8	1	229	1	223	9.54e-40	138
MsaG002310	AT4G24540.1	40.889	225	126	4	1	225	1	218	4.24e-39	135
MsaG002310	AT4G22950.2	44.318	176	93	1	1	176	1	171	1.16e-38	133

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Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACGTACCTGTGGTAG+AGG	0.539197	1:-37079133	None:intergenic
AAATTGTGCAGAAGAATGAG+CGG	0.689002	1:+37079866	MsaT002310.1:intron
AAGAAGAAGAGAATGGGGAG+AGG	0.505861	1:+37078242	None:intergenic
ACAAAGAACAGACAACTCTT+TGG	0.361038	1:-37078348	None:intergenic
ACTATTTCAAGGTACGGTAA+CGG	0.626722	1:+37079061	MsaT002310.1:CDS
ACTTAAGAGATCCAGGTTAC+AGG	0.376681	1:+37081836	MsaT002310.1:CDS
AGATTGAGAATTTGAATAAC+AGG	0.317778	1:+37078282	MsaT002310.1:CDS
AGGTACGGTAACGGAGGCCT+TGG	0.428686	1:+37079070	MsaT002310.1:CDS
ATAGAACCTAGCAACAACTC+GGG	0.590238	1:+37083378	MsaT002310.1:CDS
ATGAGCGGTAAGGAGCTTGA+TGG	0.495202	1:+37079881	MsaT002310.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	37078254	37083422	37078254	ID=MsaG002310
Chr1	mRNA	37078254	37083422	37078254	ID=MsaT002310.1;Parent=MsaG002310
Chr1	exon	37078254	37078435	37078254	ID=MsaT002310.1.exon1;Parent=MsaT002310.1
Chr1	CDS	37078254	37078435	37078254	ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1	exon	37079051	37079144	37079051	ID=MsaT002310.1.exon2;Parent=MsaT002310.1
Chr1	CDS	37079051	37079144	37079051	ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1	exon	37079600	37079661	37079600	ID=MsaT002310.1.exon3;Parent=MsaT002310.1
Chr1	CDS	37079600	37079661	37079600	ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1	exon	37079877	37079976	37079877	ID=MsaT002310.1.exon4;Parent=MsaT002310.1
Chr1	CDS	37079877	37079976	37079877	ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1	exon	37081816	37081857	37081816	ID=MsaT002310.1.exon5;Parent=MsaT002310.1
Chr1	CDS	37081816	37081857	37081816	ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1	exon	37082401	37082442	37082401	ID=MsaT002310.1.exon6;Parent=MsaT002310.1
Chr1	CDS	37082401	37082442	37082401	ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1	exon	37082588	37082730	37082588	ID=MsaT002310.1.exon7;Parent=MsaT002310.1
Chr1	CDS	37082588	37082730	37082588	ID=cds.MsaT002310.1;Parent=MsaT002310.1
Chr1	exon	37083338	37083422	37083338	ID=MsaT002310.1.exon8;Parent=MsaT002310.1
Chr1	CDS	37083338	37083422	37083338	ID=cds.MsaT002310.1;Parent=MsaT002310.1

Gene Sequence

>MsaT002310.1

ATGGGGAGAGGAAAGATTGAGATTAAGAAGATTGAGAATTTGAATAACAGGCAAGTTACATTTTCCAAGAGACGCAATGGTTTGCTCAAGAAAGCCAAAGAGTTGTCTGTTCTTTGTGATGCAGAGGTTGCTGTTATCATATATTCTGGCACTGGCAAGCTTTATGAGTTTTCAAGCACAAGCATGGAGCACACTATTTCAAGGTACGGTAACGGAGGCCTTGGTTTGAATAATGGAGCAGAGCTGGAACAACCCAGTGATCAGCCTCTACCACAGGTTGTGGAGCTTGATACTACCATTCTGCAGGAAGAAATAACAAAACTTCGTTCAGCTTACTTAAGAATGAGCGGTAAGGAGCTTGATGGATTGGGCCTTAAAGAACTGCAGTACCTAGAACATCAACTCCGTGAAGGGATATCAGCTGTCAAAAATAAGAAGGAACAAGTGCTTGCTGAACAACTTAAGAGATCCAGGTTACAGGAGCAAAAGGCTATGATGGAGAATGAAGCTCTTCGCAAACAACTTGAGGAGATAGTAAATAAAAGAAAGACAGAGTTCATTGAATTTCATCCATTGCATAGGACAATTTCAATCAACGGTTCAAAACCTGCTTTCAATTATGCTTTAGAGAGTAACAAGATTTCAGATACTTCCTTGCAGTTAGGGTTGTCATCAGATTATGATCACAAGAGGAAAGAATGCAAGATAGAACCTAGCAACAACTCGGGGAGTCAAGTTGCTTCACAGTGA

Protein sequence

>MsaT002310.1

MGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIYSGTGKLYEFSSTSMEHTISRYGNGGLGLNNGAELEQPSDQPLPQVVELDTTILQEEITKLRSAYLRMSGKELDGLGLKELQYLEHQLREGISAVKNKKEQVLAEQLKRSRLQEQKAMMENEALRKQLEEIVNKRKTEFIEFHPLHRTISINGSKPAFNYALESNKISDTSLQLGLSSDYDHKRKECKIEPSNNSGSQVASQ*