AlfalfaGEDB | MsaG002347

M. sativa ssp. caerulea / MsaG002347

KEGG: K06207
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031647 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050821 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:1901360
PFAM: PF00009.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002347	XP_013467550.1	95.421	677	17	4	1	666	1	674	0.0	1303

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002347	sp\|F4K410\|SVR3_ARATH	76.946	681	132	8	4	666	1	674	0.0	1058

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002347	tr\|A0A6A6KKT8\|A0A6A6KKT8_HEVBR	74.539	1194	209	13	3	1122	2	1174	0.0	1800

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002347	MtrunA17_Chr1g0173551	95.421	677	17	4	1	666	1	674	0.0	1303
MsaG002347	MtrunA17_Chr1g0173541	98.693	459	6	0	664	1122	70	528	0.0	943
MsaG002347	MtrunA17_Chr7g0257751	84.615	455	70	0	666	1120	78	532	0.0	835
MsaG002347	MtrunA17_Chr4g0059951	70.110	455	136	0	666	1120	93	547	0.0	700
MsaG002347	MtrunA17_Chr7g0242561	70.330	455	135	0	666	1120	76	530	0.0	686
MsaG002347	MtrunA17_Chr4g0033371	62.192	447	168	1	668	1114	94	539	0.0	613
MsaG002347	MtrunA17_Chr5g0441691	56.738	423	182	1	666	1088	88	509	1.91e-172	517
MsaG002347	MtrunA17_Chr1g0170281	57.042	426	175	3	666	1088	138	558	3.38e-170	513
MsaG002347	MtrunA17_Chr0c02g0489761	56.293	437	188	2	668	1104	100	533	4.24e-169	509
MsaG002347	MtrunA17_Chr5g0448721	57.482	421	177	1	667	1087	117	535	1.68e-168	508

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG002347	AT5G13650.1	76.946	681	132	8	4	666	1	674	1058
MsaG002347	AT5G13650.2	76.686	682	133	8	4	666	1	675	1057
MsaG002347	AT5G19450.2	78.855	454	95	1	668	1120	79	532	778
MsaG002347	AT5G19450.1	78.855	454	95	1	668	1120	79	532	778
MsaG002347	AT3G57530.1	77.681	457	101	1	666	1122	83	538	775
MsaG002347	AT5G12480.1	77.193	456	103	1	666	1120	79	534	767
MsaG002347	AT2G41860.2	77.802	455	101	0	668	1122	76	530	761
MsaG002347	AT2G41860.1	77.582	455	102	0	668	1122	76	530	759
MsaG002347	AT1G74740.1	69.824	454	137	0	666	1119	79	532	684
MsaG002347	AT3G51850.1	70.110	455	136	0	666	1120	74	528	681

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Find 268 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGGATTCCAGGTGA+TGG	0.554656	1:-38726429	MsaT002347.1:CDS
AAAATTGGAATGCTCTTTGG+AGG	0.485336	1:+38725905	None:intergenic
AAAGATGGTTTCCTAGATTA+TGG	0.229408	1:-38725979	MsaT002347.1:CDS
AAAGCGCCGGCTTACTGCAC+AGG	0.477508	1:-38726859	MsaT002347.1:CDS
AAATATAAGATCCCAACCCG+TGG	0.705474	1:-38734277	MsaT002347.1:intron
AACAAAAGGCGATGTGTTTA+TGG	0.254428	1:+38736384	None:intergenic
AACAACTACTAACAAGCATT+TGG	0.388728	1:+38737528	None:intergenic
AACACTATCTTCGATTCCTA+TGG	0.413506	1:-38734201	MsaT002347.1:CDS
AACATTGACGAACTACGAGT+AGG	0.640151	1:-38726383	MsaT002347.1:CDS
AACCAACCTGCCCAAAAGGG+AGG	0.624727	1:+38727385	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	38725366	38739609	38725366	ID=MsaG002347
Chr1	mRNA	38725366	38739609	38725366	ID=MsaT002347.1;Parent=MsaG002347
Chr1	exon	38725366	38725521	38725366	ID=MsaT002347.1.exon22;Parent=MsaT002347.1
Chr1	CDS	38725366	38725521	38725366	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38725783	38726013	38725783	ID=MsaT002347.1.exon21;Parent=MsaT002347.1
Chr1	CDS	38725783	38726013	38725783	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38726325	38726492	38726325	ID=MsaT002347.1.exon20;Parent=MsaT002347.1
Chr1	CDS	38726325	38726492	38726325	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38726613	38726728	38726613	ID=MsaT002347.1.exon19;Parent=MsaT002347.1
Chr1	CDS	38726613	38726728	38726613	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38726850	38727002	38726850	ID=MsaT002347.1.exon18;Parent=MsaT002347.1
Chr1	CDS	38726850	38727002	38726850	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38727392	38727535	38727392	ID=MsaT002347.1.exon17;Parent=MsaT002347.1
Chr1	CDS	38727392	38727535	38727392	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38727625	38727748	38727625	ID=MsaT002347.1.exon16;Parent=MsaT002347.1
Chr1	CDS	38727625	38727748	38727625	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38729290	38729569	38729290	ID=MsaT002347.1.exon15;Parent=MsaT002347.1
Chr1	CDS	38729290	38729569	38729290	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38732999	38733128	38732999	ID=MsaT002347.1.exon14;Parent=MsaT002347.1
Chr1	CDS	38732999	38733128	38732999	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38733859	38734054	38733859	ID=MsaT002347.1.exon13;Parent=MsaT002347.1
Chr1	CDS	38733859	38734054	38733859	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38734155	38734290	38734155	ID=MsaT002347.1.exon12;Parent=MsaT002347.1
Chr1	CDS	38734155	38734290	38734155	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38735010	38735104	38735010	ID=MsaT002347.1.exon11;Parent=MsaT002347.1
Chr1	CDS	38735010	38735104	38735010	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38735877	38735961	38735877	ID=MsaT002347.1.exon10;Parent=MsaT002347.1
Chr1	CDS	38735877	38735961	38735877	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38736035	38736186	38736035	ID=MsaT002347.1.exon9;Parent=MsaT002347.1
Chr1	CDS	38736035	38736186	38736035	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38736375	38736491	38736375	ID=MsaT002347.1.exon8;Parent=MsaT002347.1
Chr1	CDS	38736375	38736491	38736375	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38736566	38736700	38736566	ID=MsaT002347.1.exon7;Parent=MsaT002347.1
Chr1	CDS	38736566	38736700	38736566	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38737028	38737117	38737028	ID=MsaT002347.1.exon6;Parent=MsaT002347.1
Chr1	CDS	38737028	38737117	38737028	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38737541	38737693	38737541	ID=MsaT002347.1.exon5;Parent=MsaT002347.1
Chr1	CDS	38737541	38737693	38737541	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38737883	38738059	38737883	ID=MsaT002347.1.exon4;Parent=MsaT002347.1
Chr1	CDS	38737883	38738059	38737883	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38738289	38738492	38738289	ID=MsaT002347.1.exon3;Parent=MsaT002347.1
Chr1	CDS	38738289	38738492	38738289	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38739201	38739310	38739201	ID=MsaT002347.1.exon2;Parent=MsaT002347.1
Chr1	CDS	38739201	38739310	38739201	ID=cds.MsaT002347.1;Parent=MsaT002347.1
Chr1	exon	38739393	38739609	38739393	ID=MsaT002347.1.exon1;Parent=MsaT002347.1
Chr1	CDS	38739393	38739609	38739393	ID=cds.MsaT002347.1;Parent=MsaT002347.1

Gene Sequence

>MsaT002347.1

ATGGAGAAAATGGCACTCACTGTTCAAAACTCTTCATTATTATTCTCATCCTTAACACTTCCAAAGAAAAACTCTTCTTCTCCACTTTTCTTCAATAAACGTAACAAGCTCTTTGGACTTCCCTTATCTTCTTCCAAACCAACTCTTCGAATTGCTTCAAGGAACAATAAAGCAATTAAATGTTCAATTTCAGAAGTCACAGAAGAGCCTAAAACTGAGGAGAAGAAGAAATTGATGAGAAGAGCAGATATTAGAAATATTGCGATTGTTGCTCATGTTGATCATGGTAAAACAACTCTCGTTGATGCTATGCTCAAACAAACTAAGGTGTTTCGTGATAATCAAACTGTACAAGAAAGGATAATGGACTCTAATGATTTGGAGCGTGAAAGAGGAATCACTATACTGAGTAAAAATACATCTGTGACTTATAAAGATGCCAAGATTAATATAATTGATACTCCAGGTCACTCTGATTTTGGGGGTGAAGTAGAGCGCATCTTGAATATGGTCGAAGGAATTCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTGAAGAAGGCTTTAGAGTTTGGCCATGCGGTTGTTGTGGTTGTGAATAAAATAGACAGGTCTTCTGCTCGCCCTGATTTTGTCGTCAATTCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAGGTAATATATGCAAGTGGTATAAAAGGGAAAGCAGGGTTGTCTCCTGAAGATCTGGCAGACGACCTTGGGCCATTATTTGAATCAATCATGAGATGTATCCCTGGACCGCGTATTGATAAAGATGGCTCACTCCAAATGCTTGTTACAAGTACCGAGTACGAGGGACATAAAGGACGTATAGCAATTGGGCGCTTGGAAGCTGGAGTTTTAGAAAAAGGCATGGAAGTCAAGGTTTGTACCTCAGAAGATTCATGTAGATATGCAAGAGTTAGTGAGCTTTACGTGTATGAAAAATTCTTTCGGGTTCCTGCTCAAAGGGTGGAGGCTGGGGATATATGTGCAGTATGTGGAATTTCTGATGTTCAGATTGGGGAGACAATTGCGGATAAATTGACTGGAAAGGCACTACCTTCCATCAAAGTGGAAGAACCAACAGTGAAAATGTCTTTCTCCATAAACACATCGCCTTTTGTTGGTCGTGAGGGAAAGTATGTCACCAGTAGGAATTTAAGGGACAGGCTTTATCGTGAACTAGAGCGAAATCTGGCTATGAAGGTTGAAGATGGTGAAACAGCCGATACATTCATTGTCAGTGGACGTGGAACACTGCATATCACTATACTCATTGAAAATATGCGAAGGGAAGGATATGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTTGATGACAAAGTGTTGGAGCCGTATGAGATTGCAACTGTGGAGGTACCGGAAGAGCATATGGGATCTGTTGTTGAACTTCTTGGCCAGAGACGAGGGCAAATGTTCGACATGCAAGGAGTTGGATCCCAACCCGTGGCCTACTTGGATTGGAATGCTATTTTAACTGCTTCTCGAGGGACAGCTATCCTCAACACTATCTTCGATTCCTATGGGCCTTGGGCTGGTGACATGAGTACTGGATTTAGGCTCGCTGGTAATGTTGCTTTCGAAAATGGAACAGTTACTTCTTATGCAATCGCGAGTTCACAGGAGAGGGGGCAGATGTTTGTTGGTCCAGGAGCGGAAGTTTATAAAGGTCAAATTATTGGCATCCATCAACGCCCTGGGGACTTGTCCTTGAATGTTTGCAAGAAAAAAGCTGCAACGAACATCCGTTCCAACAAGGAACAATCAGTGATTCTTGATACACCGTTGGATTACAGTTTGGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGGTCACCCCCCAAAGTATAAGAATGTTGAAGAATCCAAAATTTGCAAAGAAAGGAAGAAATACTGGTGAAGAATTAGCGTGTAAATCGATTTCAAAGGATAAGCTAAGAACAGCGATTGATATTGAAGATGTTAGAAGAGAGGTTGAAATTATGAGGCATTTACCTAAACATCCTAATATTGTTACGTTGAAGGATACTTATGAAGATGATGATAATGTTCATCTTGTTATGGAGCTTTGTGAAGGTGGTGAGCTTTTTGATCGGATTGTTGCTAAGGGACATTATACCGAACGCGCCGCCGCAACGGTGGTTAAGACAATCGTTCAAGTTGTTCAGATGTGCCACGAACATGGTGTGATCCATCGGGATCTCAAACCCGAGAACTTTTTGTTTGCAAACAAGAAGGAAACATCACCTTTGAAAGCTATTGACTTTGGTTTGTCAATTACCTTTAAACCAGGTGATAAATTTAACGAGATAGTTGGGAGTCCATATTACATGGCCCCTGAAGTATTAAAGAGAAATTATGGCCCTGAAATAGATATCTGGAGTGCCGGAGTAATCCTTTACATCTTACTTTGCGGTATCCCTCCCTTTTGGGCAGAAACTGAGCAGGGAATTGCTCAAGCAATTATACGATCTGTTATTGACTTTAAAAAGGAACCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTATTAAGAAGATGCTTGATCCTGACCCAAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGCAGAATGCAAAGACAGCTCCTAATGTTTCATTGGGAGAAACAGTCAGAGCAAGGCTCATGCAATTTTCTGTAATGAACAAACTTAAGAAAACAGCATTGAGGGTTATTGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATAAAAGAGGGATTCCAGGTGATGGATACAGAAAATAAAGGCAAAATCAACATTGACGAACTACGAGTAGGGCTGCTTAAGCTTGGCCACCAAATTCCTGATGGAGATGTCCAAATACTGATGGAAGCTGGTGATGTAGACAAAGATGGTTTCCTAGATTATGGAGAGTTTGTAGCCATTTCTATTCATCTGAGAAAGATATCCCATGATGAACACCTCCAAAGAGCATTCCAATTTTTTGATAAAAACGAATCTGGGTTTATTGAACTTGAGGAGTTACGTAATGCCTTAGCTGATGAGGTTGACACGAACAGTGAAGAAGTCATTAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAAAATAAGTTATGAGGAATTTGCTACGATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAGTATTCGAGAGAGAGGTTTACCAGTCTCAGTATTAAACTGATGAAGGAGGGATCATTAGAATTGAACAATGAGGGTAGATGA

Protein sequence

>MsaT002347.1

MEKMALTVQNSSLLFSSLTLPKKNSSSPLFFNKRNKLFGLPLSSSKPTLRIASRNNKAIKCSISEVTEEPKTEEKKKLMRRADIRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQTVQERIMDSNDLERERGITILSKNTSVTYKDAKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRSSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGKAGLSPEDLADDLGPLFESIMRCIPGPRIDKDGSLQMLVTSTEYEGHKGRIAIGRLEAGVLEKGMEVKVCTSEDSCRYARVSELYVYEKFFRVPAQRVEAGDICAVCGISDVQIGETIADKLTGKALPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVDDKVLEPYEIATVEVPEEHMGSVVELLGQRRGQMFDMQGVGSQPVAYLDWNAILTASRGTAILNTIFDSYGPWAGDMSTGFRLAGNVAFENGTVTSYAIASSQERGQMFVGPGAEVYKGQIIGIHQRPGDLSLNVCKKKAATNIRSNKEQSVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMLKNPKFAKKGRNTGEELACKSISKDKLRTAIDIEDVRREVEIMRHLPKHPNIVTLKDTYEDDDNVHLVMELCEGGELFDRIVAKGHYTERAAATVVKTIVQVVQMCHEHGVIHRDLKPENFLFANKKETSPLKAIDFGLSITFKPGDKFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGIPPFWAETEQGIAQAIIRSVIDFKKEPWPKVSDNAKDLIKKMLDPDPKRRLTAQEVLDHPWLQNAKTAPNVSLGETVRARLMQFSVMNKLKKTALRVIADHLSVEEVAGIKEGFQVMDTENKGKINIDELRVGLLKLGHQIPDGDVQILMEAGDVDKDGFLDYGEFVAISIHLRKISHDEHLQRAFQFFDKNESGFIELEELRNALADEVDTNSEEVINAIMHDVDTDKDGKISYEEFATMMKAGTDWRKASRQYSRERFTSLSIKLMKEGSLELNNEGR*