AlfalfaGEDB | MsaG002382

M. sativa ssp. caerulea / MsaG002382

KEGG: K08857
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002382	XP_013467501.1	95.382	996	44	1	1	996	1	994	0.0	1934

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002382	sp\|Q9LT35\|NEK6_ARATH	72.000	275	76	1	1	275	1	274	9.97e-151	456
MsaG002382	sp\|Q9LT35\|NEK6_ARATH	55.000	80	34	1	912	991	330	407	6.24e-16	84.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002382	tr\|A0A072VJC5\|A0A072VJC5_MEDTR	95.382	996	44	1	1	996	1	994	0.0	1934

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002382	MtrunA17_Chr1g0173921	95.382	996	44	1	1	996	1	994	0.0	1934
MsaG002382	MtrunA17_Chr7g0258051	71.034	435	109	4	1	432	13	433	0.0	607
MsaG002382	MtrunA17_Chr7g0258051	46.640	253	83	10	780	996	406	642	3.39e-41	161
MsaG002382	MtrunA17_Chr4g0025671	65.371	283	95	1	1	283	5	284	1.62e-132	426
MsaG002382	MtrunA17_Chr7g0260191	64.773	264	93	0	1	264	1	264	1.87e-127	400
MsaG002382	MtrunA17_Chr7g0260191	55.172	58	26	0	929	986	552	609	1.05e-11	68.9
MsaG002382	MtrunA17_Chr1g0190831	61.754	285	98	2	1	285	1	274	3.63e-127	399
MsaG002382	MtrunA17_Chr1g0190831	59.259	54	22	0	933	986	553	606	2.50e-12	70.9
MsaG002382	MtrunA17_Chr2g0321841	66.794	262	87	0	1	262	1	262	5.40e-127	410
MsaG002382	MtrunA17_Chr2g0321841	75.472	53	13	0	934	986	938	990	3.13e-16	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002382	AT3G20860.1	72.000	275	76	1	1	275	1	274	1.01e-151	456
MsaG002382	AT3G20860.1	55.000	80	34	1	912	991	330	407	6.34e-17	84.7
MsaG002382	AT3G12200.1	53.639	371	163	4	1	364	16	384	9.85e-131	407
MsaG002382	AT3G12200.1	45.000	120	50	3	876	993	463	568	2.32e-16	84.3
MsaG002382	AT3G44200.2	66.541	266	89	0	1	266	5	270	1.16e-129	416
MsaG002382	AT3G44200.2	69.811	53	16	0	934	986	883	935	4.42e-14	77.4
MsaG002382	AT3G44200.1	66.541	266	89	0	1	266	5	270	1.16e-129	416
MsaG002382	AT3G44200.1	69.811	53	16	0	934	986	883	935	4.42e-14	77.4
MsaG002382	AT3G12200.2	52.231	381	163	5	1	364	16	394	1.28e-127	399
MsaG002382	AT3G12200.2	45.000	120	50	3	876	993	473	578	2.04e-16	84.3

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Find 154 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATCAAAACAACCTT+CGG	0.461948	1:+39673534	None:intergenic
AAAATCTGAAGCATTCACAG+AGG	0.763262	1:-39672642	MsaT002382.1:CDS
AAACTGCCTTCATACTTGGC+TGG	0.533424	1:+39672575	None:intergenic
AAACTTGGTAGAGGTGCTTT+AGG	0.338345	1:-39679548	MsaT002382.1:CDS
AAAGAAAATAACATTCGTCT+AGG	0.544830	1:-39675514	MsaT002382.1:intron
AAAGCTGGAAGAGCTTGCTG+CGG	0.664449	1:-39672375	MsaT002382.1:CDS
AAATAGAGCTGTAAGAGACA+TGG	0.605421	1:-39674100	MsaT002382.1:CDS
AAATCTGACATATGGTCGCT+TGG	0.513325	1:-39675057	MsaT002382.1:intron
AAATCTTACAAATCTAGTGG+TGG	0.626268	1:-39674390	MsaT002382.1:CDS
AAATTATCAAGAGCATGCTG+AGG	0.697784	1:-39674626	MsaT002382.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	39672274	39679594	39672274	ID=MsaG002382
Chr1	mRNA	39672274	39679594	39672274	ID=MsaT002382.1;Parent=MsaG002382
Chr1	exon	39672274	39674520	39672274	ID=MsaT002382.1.exon13;Parent=MsaT002382.1
Chr1	CDS	39672274	39674520	39672274	ID=cds.MsaT002382.1;Parent=MsaT002382.1
Chr1	exon	39674602	39674653	39674602	ID=MsaT002382.1.exon12;Parent=MsaT002382.1
Chr1	CDS	39674602	39674653	39674602	ID=cds.MsaT002382.1;Parent=MsaT002382.1
Chr1	exon	39674750	39674823	39674750	ID=MsaT002382.1.exon11;Parent=MsaT002382.1
Chr1	CDS	39674750	39674823	39674750	ID=cds.MsaT002382.1;Parent=MsaT002382.1
Chr1	exon	39674918	39674967	39674918	ID=MsaT002382.1.exon10;Parent=MsaT002382.1
Chr1	CDS	39674918	39674967	39674918	ID=cds.MsaT002382.1;Parent=MsaT002382.1
Chr1	exon	39675058	39675139	39675058	ID=MsaT002382.1.exon9;Parent=MsaT002382.1
Chr1	CDS	39675058	39675139	39675058	ID=cds.MsaT002382.1;Parent=MsaT002382.1
Chr1	exon	39675373	39675422	39675373	ID=MsaT002382.1.exon8;Parent=MsaT002382.1
Chr1	CDS	39675373	39675422	39675373	ID=cds.MsaT002382.1;Parent=MsaT002382.1
Chr1	exon	39675515	39675557	39675515	ID=MsaT002382.1.exon7;Parent=MsaT002382.1
Chr1	CDS	39675515	39675557	39675515	ID=cds.MsaT002382.1;Parent=MsaT002382.1
Chr1	exon	39675641	39675721	39675641	ID=MsaT002382.1.exon6;Parent=MsaT002382.1
Chr1	CDS	39675641	39675721	39675641	ID=cds.MsaT002382.1;Parent=MsaT002382.1
Chr1	exon	39676279	39676324	39676279	ID=MsaT002382.1.exon5;Parent=MsaT002382.1
Chr1	CDS	39676279	39676324	39676279	ID=cds.MsaT002382.1;Parent=MsaT002382.1
Chr1	exon	39676962	39677008	39676962	ID=MsaT002382.1.exon4;Parent=MsaT002382.1
Chr1	CDS	39676962	39677008	39676962	ID=cds.MsaT002382.1;Parent=MsaT002382.1
Chr1	exon	39677116	39677181	39677116	ID=MsaT002382.1.exon3;Parent=MsaT002382.1
Chr1	CDS	39677116	39677181	39677116	ID=cds.MsaT002382.1;Parent=MsaT002382.1
Chr1	exon	39679151	39679217	39679151	ID=MsaT002382.1.exon2;Parent=MsaT002382.1
Chr1	CDS	39679151	39679217	39679151	ID=cds.MsaT002382.1;Parent=MsaT002382.1
Chr1	exon	39679509	39679594	39679509	ID=MsaT002382.1.exon1;Parent=MsaT002382.1
Chr1	CDS	39679509	39679594	39679509	ID=cds.MsaT002382.1;Parent=MsaT002382.1

Gene Sequence

>MsaT002382.1

ATGGAAGATTATGAGGTGATAGAGAAACTTGGTAGAGGTGCTTTAGGTGCAACTTTTCTTGTTCTTCACAAAACTGAAAGAAAGAGGTATGTGTTGAAGAAGATTAGATTGGCCAAGCATACAGAGAAGTCCAAATTGACAGCATACCAAGAGCTGGACCTGATCGCACAACTAAATTATCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACTATATATACATTATAAGCGGCTATTGCGAAGGAGGTGACATGGCTGAGAATATAAAGAAAGCTCGAGGATCTTTCTTTCCAGAGGAGAAAGTCTGCAAATGGATGACTCAGTTGTTGCTAGCTGTGGACTACCTGCACTCTAACCGCGTGCTACACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGAAAATAACATTCGTCTAGGTGACTTTGGTCTTGCAAAGCTACTTGACACAGACGACCCTGCTTCTTCGGTTGTTGGAACTCTAAATTACATGTGTCCTGAGATCTTTTCTGATATGCCTTACGGTTATAAATCTGACATATGGTCGCTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCGGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATCCACCATTTCTCCACTGCCAATTGTTTACTCTTCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAACCCTGAACACAGACCAACAGCAGCTGAATTGTTGAGGCATCCTCATTTACAACCTTTTGTTCTCCGCTCTCGTGATGCACCCTCTGTTTTTCTTCCGGTACATCTCATAAGTTGTAACTCACCGAAAAAATCTTACAAATCTAGTGGTGGCAAAGACAATAAGGACAGAGAAGAAGGATTAGTTCACCATTTGGAGCGAGTTTATCCCATTGAGGGAAATGGAGACGTACAGACAAGAAACCGACCAAATGGTCGCAAGCTAGCAGTGTCAGTGAGCACAGAAGACAACCTTGAGACTAAAAGGGTTGATCCTACCAGCTACTCATTGGAATTCTCTACAAGTTTTAGTGGCTCAAAAGACGAGTCAACAACATCTGAATCAACCGTTTGCAGCGTGTGCAAGGAAGCAGACTTAAAAAATAGAGCTGTAAGAGACATGGATGATACAGAGATCACTTCAAAGAGTACCCTAGATTTTGCACATGAAAAACAAGTATTTGCAACTGAACATTTTCAGAAGTCGTATGCGGTTGACATAAATACAGGGACTAAAAAAGTTGAAGATACTTTTTCCAATGAAGACAGTAGTGGCAATGATAAAGATGCATCCACCAGTGACAATGTCACATCACAATGTACTCGAGATTCTGTGCACGTAGAAAAAGGATTTACTGTCGAACATTTTCTGAAGGCCGATTCAATTGACATAAATGCATTAACTACAGAAGATAAATACAAGTTTTCCAATAAAGTTTTTGATAAAGTTGAATTACAGAGAGAAAATGTGAAACCTGAGGACTTCATTAAATCAATAATGTCCAGTGAAAATAGAATGGGCATTGATATAGATGGATCCATTGATGAGGTCACTTCAGAAAGTACACTAGAGTTTTTGCTTGTAGAACAATTTATTACTGAACATTGTCAGAATCCTAATGCATTTGACATAAATGCAGTGACAACAGAAGTTGAAGGTGCTCTATCCGAAGGTTGTTTTGATACTTTTTCCGAATGTGATTTTGATGCTTTCTCCGAAACACAGAGAGAAGACGCCAAACCAGAGGACTCAAATAAATCAATCATTTACAGGAAAGACTGTAATGGAAATGATAAAGAGACCGTTGATGTTATCACTTCAAATAGCACACTTGATTCTGTACATGAAAAACAGGAATGTGCCGCCGAGAATTGTCAGAACTCAAATACAATTGGCATAAATATAGCGACTACAAAAGTTGATGATAGTCTTTCTAGTGAAGATTTTGATAAAGCTGTAGCACAAAGAGAAGATGCCAAATCTGAGGACTTGAGTAATTCAATCATTGACATCAAAGACTGCAATGAAGATGATAAAGAACAGTCCATTGGTGATATCACTTCAAAGAGCACACTGGATTCTGTACATGAAGAACAGGAATGTGCAGCTGAGAATTTTCCAAAGTCAAATACAATTGACATTGACATACATGCCGTGACTGCAAATGTTGATGATACTCTTTCCGGTAAAGGTTTTGATATAGTTGAAGCGCAAACAGAGGATGTCAAACCTGAGGACTCAGGCATGTCAATCATTTACCGCAATATCAATGACGAAAAAGAGTCTATTGATGAGATCACATCAAAGAGCACAGCCGATTCTGTGCACGAAGAACGGCAATTTTCTGCTGAACACTTTCATAATCCAGATACAATTGACACAAATGCAGTGACTACAAAAGTTGATGATACTTTTTCCAACGGAGGTTTTGATAAAGTTGAAGCCAGAAGTGACAATGATAAAATTGGTTTCATCAACGAGGATATGGAATCACCGATTGATCAATCTGTTAGGGTTGAACATGACCCTGATACTGTAAGCTGCACGAAGGAAAGTGAAAAATCTGAAGCATTCACAGAGGACTCACACATGAACATTTTGACTTCTGAGAGCAATGATACACTTCCAGCCAAGTATGAAGGCAGTTTCACACATAAACACGATAAAAATGCCTCTGTTGATAAGACACCAAATGAAATTTCCTTAAGCACAAATATTTCACTAGGGGGTGACAAAACAAAGAGGTTGTTGAAAAATTCCGGCCAACAAAGAGCTGATGCTTTGGAGTCTCTGCTTGAGTTATGTGCACATTTACTTAAGCAAGGAAAGCTGGAAGAGCTTGCTGCGGTGCTAAGACCGTTTGGAGAAGACACAGTTTCATCCAGAGAAACAGCTATATGGCTGACAAAAAGCCTCATGTCGTCGCAAAAATTTAATCCGGAAACCTAG

Protein sequence

>MsaT002382.1

MEDYEVIEKLGRGALGATFLVLHKTERKRYVLKKIRLAKHTEKSKLTAYQELDLIAQLNYPYIVEYKDAWVEKEDYIYIISGYCEGGDMAENIKKARGSFFPEEKVCKWMTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGDFGLAKLLDTDDPASSVVGTLNYMCPEIFSDMPYGYKSDIWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSTISPLPIVYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPFVLRSRDAPSVFLPVHLISCNSPKKSYKSSGGKDNKDREEGLVHHLERVYPIEGNGDVQTRNRPNGRKLAVSVSTEDNLETKRVDPTSYSLEFSTSFSGSKDESTTSESTVCSVCKEADLKNRAVRDMDDTEITSKSTLDFAHEKQVFATEHFQKSYAVDINTGTKKVEDTFSNEDSSGNDKDASTSDNVTSQCTRDSVHVEKGFTVEHFLKADSIDINALTTEDKYKFSNKVFDKVELQRENVKPEDFIKSIMSSENRMGIDIDGSIDEVTSESTLEFLLVEQFITEHCQNPNAFDINAVTTEVEGALSEGCFDTFSECDFDAFSETQREDAKPEDSNKSIIYRKDCNGNDKETVDVITSNSTLDSVHEKQECAAENCQNSNTIGINIATTKVDDSLSSEDFDKAVAQREDAKSEDLSNSIIDIKDCNEDDKEQSIGDITSKSTLDSVHEEQECAAENFPKSNTIDIDIHAVTANVDDTLSGKGFDIVEAQTEDVKPEDSGMSIIYRNINDEKESIDEITSKSTADSVHEERQFSAEHFHNPDTIDTNAVTTKVDDTFSNGGFDKVEARSDNDKIGFINEDMESPIDQSVRVEHDPDTVSCTKESEKSEAFTEDSHMNILTSESNDTLPAKYEGSFTHKHDKNASVDKTPNEISLSTNISLGGDKTKRLLKNSGQQRADALESLLELCAHLLKQGKLEELAAVLRPFGEDTVSSRETAIWLTKSLMSSQKFNPET*