AlfalfaGEDB | MsaG002402

M. sativa ssp. caerulea / MsaG002402

KEGG: K04424
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002402	XP_003589007.2	73.973	219	50	2	1	212	712	930	1.18e-104	332

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002402	sp\|Q9C9U5\|SIS8_ARATH	58.986	217	79	3	1	210	797	1010	2.94e-81	264

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002402	tr\|G7IB74\|G7IB74_MEDTR	73.973	219	50	2	1	212	712	930	5.62e-105	332

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002402	MtrunA17_Chr1g0151541	73.973	219	50	2	1	212	712	930	1.08e-108	332
MsaG002402	MtrunA17_Chr8g0392871	58.986	217	79	3	1	210	788	1001	3.08e-83	266
MsaG002402	MtrunA17_Chr1g0191171	60.377	212	77	2	1	205	738	949	5.60e-83	265
MsaG002402	MtrunA17_Chr6g0482711	56.604	212	85	2	1	205	709	920	1.67e-81	260
MsaG002402	MtrunA17_Chr1g0179331	55.340	206	83	3	1	197	604	809	6.90e-71	230
MsaG002402	MtrunA17_Chr2g0294351	52.153	209	93	2	1	202	515	723	1.65e-69	225
MsaG002402	MtrunA17_Chr4g0068411	54.822	197	82	2	1	190	509	705	6.50e-69	224
MsaG002402	MtrunA17_Chr3g0132791	50.673	223	99	4	1	212	702	924	4.70e-68	224
MsaG002402	MtrunA17_Chr5g0397931	52.451	204	90	2	1	197	472	675	7.34e-67	217
MsaG002402	MtrunA17_Chr5g0427651	51.196	209	93	3	1	200	695	903	4.84e-66	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002402	AT5G11850.1	63.303	218	73	2	1	211	658	875	4.82e-93	290
MsaG002402	AT1G18160.1	58.852	209	79	2	1	202	764	972	1.95e-83	267
MsaG002402	AT1G73660.1	58.986	217	79	3	1	210	797	1010	2.99e-82	264
MsaG002402	AT1G08720.1	58.962	212	80	2	1	205	718	929	7.30e-80	256
MsaG002402	AT1G18160.2	61.702	188	65	2	1	181	764	951	2.21e-77	250
MsaG002402	AT1G08720.2	61.170	188	66	2	1	181	718	905	2.82e-73	238
MsaG002402	AT5G49470.7	51.675	209	94	2	1	202	413	621	7.57e-72	230
MsaG002402	AT1G67890.1	52.153	209	92	3	1	202	536	743	2.00e-71	231
MsaG002402	AT5G03730.2	56.796	206	80	3	1	197	600	805	1.01e-70	230
MsaG002402	AT5G03730.1	56.796	206	80	3	1	197	600	805	1.01e-70	230

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Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCCATGGCATGGTAT+GGG	0.536448	1:+40206348	MsaT002402.1:CDS
AAAGTCTCCAAACCTTCTTG+TGG	0.627004	1:+40205701	MsaT002402.1:CDS
ACATCGTTAATAACCTGCAT+AGG	0.527513	1:-40206372	None:intergenic
ACCAGGAAAATCCCATGGCA+TGG	0.616994	1:+40206342	MsaT002402.1:CDS
ACCTTCTTGTGGACAGAAAT+TGG	0.118200	1:+40205712	MsaT002402.1:CDS
ACGAGATATCAACTCTGAGA+AGG	0.595773	1:-40206587	None:intergenic
ACTGCTGGATCCACTTCTTC+TGG	0.362239	1:-40206423	None:intergenic
AGACAACCAATCGGCGAACA+CGG	0.541343	1:-40206615	None:intergenic
AGTCTTCATGGACAAAATGG+CGG	0.615785	1:-40205677	None:intergenic
ATAGGGCCCATACCATGCCA+TGG	0.619438	1:-40206354	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	40205041	40206660	40205041	ID=MsaG002402
Chr1	mRNA	40205041	40206660	40205041	ID=MsaT002402.1;Parent=MsaG002402
Chr1	exon	40205041	40205132	40205041	ID=MsaT002402.1.exon1;Parent=MsaT002402.1
Chr1	CDS	40205041	40205132	40205041	ID=cds.MsaT002402.1;Parent=MsaT002402.1
Chr1	exon	40205290	40205368	40205290	ID=MsaT002402.1.exon2;Parent=MsaT002402.1
Chr1	CDS	40205290	40205368	40205290	ID=cds.MsaT002402.1;Parent=MsaT002402.1
Chr1	exon	40205651	40205743	40205651	ID=MsaT002402.1.exon3;Parent=MsaT002402.1
Chr1	CDS	40205651	40205743	40205651	ID=cds.MsaT002402.1;Parent=MsaT002402.1
Chr1	exon	40205970	40206038	40205970	ID=MsaT002402.1.exon4;Parent=MsaT002402.1
Chr1	CDS	40205970	40206038	40205970	ID=cds.MsaT002402.1;Parent=MsaT002402.1
Chr1	exon	40206178	40206227	40206178	ID=MsaT002402.1.exon5;Parent=MsaT002402.1
Chr1	CDS	40206178	40206227	40206178	ID=cds.MsaT002402.1;Parent=MsaT002402.1
Chr1	exon	40206314	40206475	40206314	ID=MsaT002402.1.exon6;Parent=MsaT002402.1
Chr1	CDS	40206314	40206475	40206314	ID=cds.MsaT002402.1;Parent=MsaT002402.1
Chr1	exon	40206567	40206660	40206567	ID=MsaT002402.1.exon7;Parent=MsaT002402.1
Chr1	CDS	40206567	40206660	40206567	ID=cds.MsaT002402.1;Parent=MsaT002402.1

Gene Sequence

>MsaT002402.1

ATGCTAAAGTTGTGGCATCCGAATGTTGTGCTCTGCCTGGGAGCGATTACTCGTCCTCCACATATCTCTATCTTGACAGAGTTTCTTCCTAGAGGCAGTTTATATAGGCTATTGCATCACTCCAATCTGGTACTTGATGAGAAGAGACGGCTGCGTATGGCTCTTGATGTGGCAGAGGGAATGAATTACTTGCACACCCGCCATTTTGTCCATGAAGACTTAAAGTCTCCAAACCTTCTTGTGGACAGAAATTGGGTTGTAAAGGTCTGTGATTTTGGTGTGTCACGTATGAAGCACCAGTCATATTTTTATTCGACGCCTTCTGCTACAAAGCTTGAGTGGATGGCACCAGAAGTGTTGGTGAACTTGCCTTCCAATAAGAATTTTGGTGTGATCTTGTGGGAGTTAACTACCAGGAAAATCCCATGGCATGGTATGGGCCCTATGCAGGTTATTAACGATGTTGTGTTCGAAAATAAACGTCTTGAAATTCCAGAAGAAGTGGATCCAGCAGTAGCTGAAATAATACGCGATTGCTGGAAAAACGAGCCATGCTGTCGGCCATCCTTCTCAGAGTTGATATCTCGTCTTAACCGTGTTCGCCGATTGGTTGTCTGTAAGACGGGCTCTACACATTAA

Protein sequence

>MsaT002402.1

MLKLWHPNVVLCLGAITRPPHISILTEFLPRGSLYRLLHHSNLVLDEKRRLRMALDVAEGMNYLHTRHFVHEDLKSPNLLVDRNWVVKVCDFGVSRMKHQSYFYSTPSATKLEWMAPEVLVNLPSNKNFGVILWELTTRKIPWHGMGPMQVINDVVFENKRLEIPEEVDPAVAEIIRDCWKNEPCCRPSFSELISRLNRVRRLVVCKTGSTH*