AlfalfaGEDB | MsaG002403

M. sativa ssp. caerulea / MsaG002403

KEGG: -
GO: -
PFAM: PF13912.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002403	RHN78770.1	69.632	326	62	3	1	299	1	316	2.71e-138	403

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002403	tr\|A0A396JKH3\|A0A396JKH3_MEDTR	69.632	326	62	3	1	299	1	316	1.29e-138	403

TFs/TRs:

Gene ID	Type	Classification
MsaG002403	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000613	MsaG002403	0.800968	1.881426e-48	2.599930e-46
MsaG002403	MsaG002885	0.803036	7.101716e-49	1.028781e-46
MsaG002403	MsaG003335	0.802289	1.010933e-48	1.439620e-46
MsaG002403	MsaG007821	0.818280	3.711738e-52	7.803300e-50
MsaG002403	MsaG010644	0.801089	1.777260e-48	2.462721e-46
MsaG002403	MsaG013264	0.827381	2.880961e-54	7.742864e-52
MsaG002403	MsaG017136	0.804298	3.897296e-49	5.813306e-47
MsaG002403	MsaG028844	0.805777	1.917739e-49	2.960490e-47
MsaG002403	MsaG030519	0.824810	1.169613e-53	2.926910e-51
MsaG002403	MsaG031352	0.820447	1.196561e-52	2.663127e-50
MsaG002403	MsaG032180	0.815671	1.421692e-51	2.795340e-49
MsaG002403	MsaG035391	0.803836	4.858163e-49	7.168995e-47
MsaG002403	MsaG043850	0.813707	3.852332e-51	7.208704e-49
MsaG002403	MsaG044105	0.806166	1.590367e-49	2.477751e-47
MsaG002403	MsaG044571	0.832249	1.903435e-55	5.878410e-53
MsaG002403	MsaG019915	0.805939	1.774026e-49	2.749115e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002403	MtrunA17_Chr1g0169561	69.632	326	62	3	1	299	1	316	2.49e-142	403
MsaG002403	MtrunA17_Chr1g0169521	68.098	326	67	3	1	299	1	316	5.47e-136	387
MsaG002403	MtrunA17_Chr1g0174001	88.718	195	19	1	108	299	1	195	9.01e-122	347
MsaG002403	MtrunA17_Chr7g0214511	54.065	246	75	9	67	299	67	287	4.42e-63	201
MsaG002403	MtrunA17_Chr1g0174861	38.776	245	103	11	36	276	38	239	7.98e-33	121
MsaG002403	MtrunA17_Chr1g0193731	39.419	241	68	9	67	298	51	222	3.21e-29	112
MsaG002403	MtrunA17_Chr1g0174871	39.910	223	101	11	90	298	81	284	4.54e-28	109
MsaG002403	MtrunA17_Chr1g0172861	34.835	333	113	17	5	299	12	278	1.40e-22	94.7
MsaG002403	MtrunA17_Chr1g0172961	32.770	296	139	13	5	282	12	265	6.23e-21	90.1
MsaG002403	MtrunA17_Chr1g0180581	33.906	233	85	10	67	299	57	220	3.36e-18	81.6
MsaG002403	MtrunA17_Chr4g0037041	52.273	88	32	5	74	157	58	139	8.92e-14	68.6
MsaG002403	MtrunA17_Chr1g0180571	50.667	75	21	2	219	293	13	71	1.78e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 54 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATAAAAGAGAGACACTAAT+TGG	0.250890	1:-40214802	None:intergenic
CGAATCACTGTCATAGTAAA+AGG	0.272104	1:+40214496	MsaT002403.1:CDS
AGCGAAGGTGAAACTGAATT+AGG	0.276698	1:+40214717	MsaT002403.1:CDS
GCAAAAGATTTCCAGTAATA+TGG	0.318067	1:+40214518	MsaT002403.1:CDS
GCTATCATCCACCATATTAC+TGG	0.352563	1:-40214529	None:intergenic
CTCAAGATGGCTCTGTTTCA+AGG	0.407872	1:-40214298	None:intergenic
GTGATTCGCATCAAGATTAC+CGG	0.407962	1:-40214481	None:intergenic
CACAATCATAATCATGATGA+TGG	0.409442	1:+40214138	MsaT002403.1:CDS
GCGAAGGTGAAACTGAATTA+GGG	0.418343	1:+40214718	MsaT002403.1:CDS
TTTAGGTTTAAGAGGAATGT+TGG	0.422630	1:-40214028	None:intergenic
TCAATAAAATGTCTTCTCCT+TGG	0.432037	1:-40214387	None:intergenic
ATGTCCGTTCAAAGCATTGT+TGG	0.440760	1:-40214208	None:intergenic
CGTTATTCACAGCATGATCA+TGG	0.444828	1:-40214065	None:intergenic
GACTCTAACCGTGATATTGA+AGG	0.464706	1:+40214681	MsaT002403.1:CDS
GGCTCTGTTTCAAGGAAGAT+CGG	0.474884	1:-40214290	None:intergenic
AATGTTGGAGGAGTGGTGAC+TGG	0.475721	1:-40214013	None:intergenic
ATATCACGGTTAGAGTCTAT+AGG	0.475889	1:-40214675	None:intergenic
ACTCAAAAGGGTTCGAAGAA+TGG	0.483594	1:+40214243	MsaT002403.1:CDS
TATGAGATGGCATACTCAAA+AGG	0.486406	1:+40214230	MsaT002403.1:CDS
TTGCCGCAACGAAAAGAACT+TGG	0.515791	1:+40214593	MsaT002403.1:CDS
TTAGTCTTGTGAGATATTGG+TGG	0.516257	1:-40214354	None:intergenic
AACAAGGTGTGCTGCTAACA+AGG	0.519240	1:+40214565	MsaT002403.1:CDS
TACTTTGACAAGTCATTAGC+CGG	0.522449	1:-40214327	None:intergenic
ATGAGATGGCATACTCAAAA+GGG	0.526510	1:+40214231	MsaT002403.1:CDS
GCTCTGTTTCAAGGAAGATC+GGG	0.528874	1:-40214289	None:intergenic
CATGATCATGCTGTGAATAA+CGG	0.530498	1:+40214066	MsaT002403.1:CDS
AGGTTTAAGAGGAATGTTGG+AGG	0.532088	1:-40214025	None:intergenic
TCATCTTCAAAATTGTCACT+TGG	0.534630	1:-40214777	None:intergenic
TCATCCAACAATGCTTTGAA+CGG	0.535361	1:+40214204	MsaT002403.1:CDS
AAGATCGGGCAGTCGGTGGG+TGG	0.537715	1:-40214275	None:intergenic
AAGGAAGATCGGGCAGTCGG+TGG	0.543693	1:-40214279	None:intergenic
TCAAACGAATGGTGAGAAGA+AGG	0.549246	1:-40213931	None:intergenic
AGGAAGATCGGGCAGTCGGT+GGG	0.550277	1:-40214278	None:intergenic
TAAGAGGAATGTTGGAGGAG+TGG	0.552193	1:-40214020	None:intergenic
TCTTCTTGCCTTCAATATCA+CGG	0.552226	1:-40214689	None:intergenic
TACATGTGACGTTTGTAACA+AGG	0.552611	1:+40214176	MsaT002403.1:CDS
TGTTACAAACGTCACATGTA+CGG	0.556278	1:-40214173	None:intergenic
ACAATCATAATCATGATGAT+GGG	0.567903	1:+40214139	MsaT002403.1:CDS
GGATGATAGCGAGAAGATGA+AGG	0.572753	1:+40214542	MsaT002403.1:CDS
CACTGTTGTATATATCTCGA+GGG	0.580481	1:+40214442	MsaT002403.1:CDS
GAGCCATCTTGAGTTTCCAC+CGG	0.591664	1:+40214308	MsaT002403.1:CDS
AAAGATTTCCAGTAATATGG+TGG	0.595472	1:+40214521	MsaT002403.1:CDS
GGCAAGAAGAAGATTAGCGA+AGG	0.606572	1:+40214702	MsaT002403.1:CDS
TTCAAGGAAGATCGGGCAGT+CGG	0.606633	1:-40214282	None:intergenic
TCTGTTGGTGATCATGATCA+TGG	0.608195	1:-40213969	None:intergenic
CTTTGAACGGACATATGAGA+TGG	0.613266	1:+40214217	MsaT002403.1:CDS
ACGAAAAGAACTTGGTGTTG+AGG	0.613989	1:+40214601	MsaT002403.1:CDS
ACACTGTTGTATATATCTCG+AGG	0.619081	1:+40214441	MsaT002403.1:CDS
TGATTCGCATCAAGATTACC+GGG	0.632927	1:-40214480	None:intergenic
TAGCCGGTGGAAACTCAAGA+TGG	0.650157	1:-40214311	None:intergenic
ACTGTTGTATATATCTCGAG+GGG	0.661339	1:+40214443	MsaT002403.1:CDS
AGCGAGAAGATGAAGGAACA+AGG	0.665288	1:+40214549	MsaT002403.1:CDS
TTTGACAAGTCATTAGCCGG+TGG	0.679594	1:-40214324	None:intergenic
CTGTTGTATATATCTCGAGG+GGG	0.727133	1:+40214444	MsaT002403.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	40213910	40214809	40213910	ID=MsaG002403
Chr1	mRNA	40213910	40214809	40213910	ID=MsaT002403.1;Parent=MsaG002403
Chr1	exon	40213910	40214809	40213910	ID=MsaT002403.1.exon1;Parent=MsaT002403.1
Chr1	CDS	40213910	40214809	40213910	ID=cds.MsaT002403.1;Parent=MsaT002403.1

Gene Sequence

>MsaT002403.1

ATGAACAAACACTACTCTTCACCTTCTTCTCACCATTCGTTTGATAAACCGAAAAACAGCCATGATCATGATCACCAACAGATTCTTGAAAATGATAAGAAAACCAGTCACCACTCCTCCAACATTCCTCTTAAACCTAAAACAAACAAACAGAGCCATGATCATGCTGTGAATAACGGAACGTTGAAGAAGACAGCAAAAATCACTTGGGTTTTTTCTTCTTCTCTTCACAATCATAATCATGATGATGGGAAACTGAAGAACCGTACATGTGACGTTTGTAACAAGGTTTTTTCATCCAACAATGCTTTGAACGGACATATGAGATGGCATACTCAAAAGGGTTCGAAGAATGGTGTTATTTTCCACCCACCGACTGCCCGATCTTCCTTGAAACAGAGCCATCTTGAGTTTCCACCGGCTAATGACTTGTCAAAGTACTTACCACCAATATCTCACAAGACTAAAAAGCGGAGTCCAAGGAGAAGACATTTTATTGATAATGATGAAGAACTTAATATTGCTGCAGAAACACTGTTGTATATATCTCGAGGGGGTTGTGAGGGATTGCCCGGTAATCTTGATGCGAATCACTGTCATAGTAAAAGGCAAAAGATTTCCAGTAATATGGTGGATGATAGCGAGAAGATGAAGGAACAAGGTGTGCTGCTAACAAGGTGTGTTTGCCGCAACGAAAAGAACTTGGTGTTGAGGTTGAAGATTCCTAAAGACAAGATTTTGCAAAAATCACAAGATTGCAAGGAACCTATAGACTCTAACCGTGATATTGAAGGCAAGAAGAAGATTAGCGAAGGTGAAACTGAATTAGGGTCAAGAGTTGTTATGAATTTTGATTTGAATGAGATTCCAAGTGACAATTTTGAAGATGAAACCAATTAG

Protein sequence

>MsaT002403.1

MNKHYSSPSSHHSFDKPKNSHDHDHQQILENDKKTSHHSSNIPLKPKTNKQSHDHAVNNGTLKKTAKITWVFSSSLHNHNHDDGKLKNRTCDVCNKVFSSNNALNGHMRWHTQKGSKNGVIFHPPTARSSLKQSHLEFPPANDLSKYLPPISHKTKKRSPRRRHFIDNDEELNIAAETLLYISRGGCEGLPGNLDANHCHSKRQKISSNMVDDSEKMKEQGVLLTRCVCRNEKNLVLRLKIPKDKILQKSQDCKEPIDSNRDIEGKKKISEGETELGSRVVMNFDLNEIPSDNFEDETN*