AlfalfaGEDB | MsaG002420

M. sativa ssp. caerulea / MsaG002420

KEGG: -
GO: GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002420	XP_013467539.1	91.821	379	19	4	2	372	4	378	0.0	694

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002420	sp\|Q66GR3\|BH130_ARATH	47.558	389	151	7	1	369	1	356	2.44e-98	299

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002420	tr\|A0A072VIY5\|A0A072VIY5_MEDTR	91.821	379	19	4	2	372	4	378	0.0	694

TFs/TRs:

Gene ID	Type	Classification
MsaG002420	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000128	MsaG002420	0.822919	3.229783e-53	7.677848e-51
MsaG000308	MsaG002420	0.852536	8.302973e-61	4.914115e-58
MsaG000352	MsaG002420	0.803495	5.711692e-49	8.362290e-47
MsaG000514	MsaG002420	0.855735	1.001456e-61	6.643603e-59
MsaG000762	MsaG002420	0.803355	6.105846e-49	8.910552e-47
MsaG001188	MsaG002420	0.803398	5.981231e-49	8.737370e-47
MsaG002021	MsaG002420	0.839124	3.523190e-57	1.338129e-54
MsaG002420	MsaG002536	0.808296	5.653845e-50	9.266535e-48
MsaG002420	MsaG003423	0.804861	2.977790e-49	4.499989e-47
MsaG002420	MsaG003901	0.820534	1.143337e-52	2.550400e-50
MsaG002420	MsaG004279	0.822007	5.249256e-53	1.217570e-50
MsaG002420	MsaG004385	0.802007	1.154822e-48	1.633883e-46
MsaG002420	MsaG004538	0.811769	1.018037e-50	1.815349e-48
MsaG002420	MsaG005210	0.838113	6.407332e-57	2.358148e-54
MsaG002420	MsaG005289	0.811859	9.736232e-51	1.740004e-48
MsaG002420	MsaG005354	0.810630	1.793599e-50	3.110320e-48
MsaG002420	MsaG005584	0.806622	1.275468e-49	2.008794e-47
MsaG002420	MsaG005770	0.818568	3.196189e-52	6.769767e-50
MsaG002420	MsaG005812	0.816016	1.191889e-51	2.364053e-49
MsaG002420	MsaG006221	0.810308	2.103346e-50	3.618984e-48
MsaG002420	MsaG006469	0.803427	5.898361e-49	8.622124e-47
MsaG002420	MsaG006572	0.814093	3.169276e-51	5.988294e-49
MsaG002420	MsaG006558	0.809776	2.734215e-50	4.644141e-48
MsaG002420	MsaG006655	0.803853	4.818244e-49	7.112850e-47
MsaG002420	MsaG007006	0.830553	4.953552e-55	1.456363e-52
MsaG002420	MsaG007327	0.886063	1.024398e-71	2.472525e-68
MsaG002420	MsaG007600	0.801019	1.836337e-48	2.540595e-46
MsaG002420	MsaG008201	0.800183	2.714904e-48	3.685758e-46
MsaG002420	MsaG008915	0.834739	4.582728e-56	1.523207e-53
MsaG002420	MsaG009059	0.820457	1.190371e-52	2.650002e-50
MsaG002420	MsaG009179	0.810488	1.924049e-50	3.325084e-48
MsaG002420	MsaG009781	0.823749	2.070615e-53	5.034291e-51
MsaG002420	MsaG010596	0.824750	1.208283e-53	3.018650e-51
MsaG002420	MsaG010619	0.814833	2.178447e-51	4.193363e-49
MsaG002420	MsaG011406	0.801452	1.498828e-48	2.094106e-46
MsaG002420	MsaG011468	0.839902	2.216821e-57	8.627633e-55
MsaG002420	MsaG011586	0.806257	1.521769e-49	2.376097e-47
MsaG002420	MsaG011605	0.828963	1.203038e-54	3.379846e-52
MsaG002420	MsaG011951	0.801619	1.386343e-48	1.944245e-46
MsaG002420	MsaG012204	0.805618	2.070197e-49	3.183995e-47
MsaG002420	MsaG012805	0.818467	3.368247e-52	7.115516e-50
MsaG002420	MsaG013338	0.811882	9.625153e-51	1.721138e-48
MsaG002420	MsaG014194	0.811691	1.058369e-50	1.883688e-48
MsaG002420	MsaG014725	0.840755	1.329813e-57	5.315564e-55
MsaG002420	MsaG017340	0.825212	9.408360e-54	2.380468e-51
MsaG002420	MsaG017354	0.833945	7.236996e-56	2.348789e-53
MsaG002420	MsaG017464	0.817283	6.216621e-52	1.273853e-49
MsaG002420	MsaG017473	0.844181	1.657107e-58	7.391723e-56
MsaG002420	MsaG017589	0.830006	6.727377e-55	1.947339e-52
MsaG002420	MsaG017737	0.845234	8.651351e-59	3.994641e-56
MsaG002420	MsaG018259	0.802860	7.718279e-49	1.113549e-46
MsaG002420	MsaG018367	0.851334	1.814840e-60	1.029894e-57
MsaG002420	MsaG018465	0.813169	5.049492e-51	9.322572e-49
MsaG002420	MsaG018505	0.824798	1.177004e-53	2.944406e-51
MsaG002420	MsaG018752	0.807126	9.994615e-50	1.592827e-47
MsaG002420	MsaG018874	0.804196	4.090452e-49	6.086931e-47
MsaG002420	MsaG019287	0.807687	7.610252e-50	1.229155e-47
MsaG002420	MsaG019572	0.800004	2.950825e-48	3.990157e-46
MsaG002420	MsaG020188	0.852529	8.337697e-61	4.933665e-58
MsaG002420	MsaG020402	0.841768	7.221292e-58	2.980750e-55
MsaG002420	MsaG020814	0.813315	4.692739e-51	8.695355e-49
MsaG002420	MsaG022116	0.809865	2.617952e-50	4.456099e-48
MsaG002420	MsaG023474	0.804865	2.972330e-49	4.492115e-47
MsaG002420	MsaG023609	0.852939	6.375465e-61	3.827825e-58
MsaG002420	MsaG023941	0.874300	1.553442e-67	2.166504e-64
MsaG002420	MsaG024271	0.800625	2.208810e-48	3.028928e-46
MsaG002420	MsaG025506	0.801949	1.186514e-48	1.676561e-46
MsaG002420	MsaG027416	0.874014	1.939561e-67	2.671558e-64
MsaG002420	MsaG027494	0.805391	2.309277e-49	3.532894e-47
MsaG002420	MsaG028040	0.804352	3.797264e-49	5.671189e-47
MsaG002420	MsaG028066	0.803378	6.037994e-49	8.816357e-47
MsaG002420	MsaG028142	0.804701	3.214297e-49	4.839270e-47
MsaG002420	MsaG028407	0.807845	7.045220e-50	1.142259e-47
MsaG002420	MsaG028488	0.843169	3.080985e-58	1.330130e-55
MsaG002420	MsaG028530	0.832077	2.098303e-55	6.448489e-53
MsaG002420	MsaG028862	0.801156	1.722411e-48	2.390334e-46
MsaG002420	MsaG028908	0.814498	2.581730e-51	4.927861e-49
MsaG002420	MsaG029132	0.809667	2.886284e-50	4.889375e-48
MsaG002420	MsaG029245	0.824541	1.352039e-53	3.358741e-51
MsaG002420	MsaG029470	0.802526	9.041868e-49	1.294599e-46
MsaG002420	MsaG029838	0.819009	2.541096e-52	5.444744e-50
MsaG002420	MsaG029950	0.824152	1.667891e-53	4.099482e-51
MsaG002420	MsaG032422	0.802077	1.117221e-48	1.583254e-46
MsaG002420	MsaG032716	0.807112	1.006299e-49	1.603162e-47
MsaG002420	MsaG033396	0.813964	3.382880e-51	6.371342e-49
MsaG002420	MsaG033540	0.804679	3.247864e-49	4.887384e-47
MsaG002420	MsaG033519	0.854318	2.571483e-61	1.621437e-58
MsaG002420	MsaG033744	0.834444	5.431778e-56	1.789501e-53
MsaG002420	MsaG034065	0.819444	2.024407e-52	4.387570e-50
MsaG002420	MsaG034132	0.839780	2.383352e-57	9.240029e-55
MsaG002420	MsaG035001	0.805155	2.586667e-49	3.935699e-47
MsaG002420	MsaG035190	0.831870	2.359092e-55	7.206517e-53
MsaG002420	MsaG035203	0.837532	9.021472e-57	3.261642e-54
MsaG002420	MsaG035236	0.852050	1.139560e-60	6.631932e-58
MsaG002420	MsaG035238	0.854614	2.112839e-61	1.346280e-58
MsaG002420	MsaG039946	0.846795	3.270241e-59	1.590425e-56
MsaG002420	MsaG041463	0.802274	1.018253e-48	1.449514e-46
MsaG002420	MsaG042222	0.843427	2.631335e-58	1.145475e-55
MsaG002420	MsaG042327	0.840681	1.390314e-57	5.544643e-55
MsaG002420	MsaG042557	0.833369	1.006430e-55	3.211642e-53
MsaG002420	MsaG043225	0.826339	5.098415e-54	1.330958e-51
MsaG002420	MsaG044225	0.820879	9.534211e-53	2.146203e-50
MsaG002420	MsaG044795	0.852229	1.014227e-60	5.939039e-58
MsaG002420	MsaG044863	0.834524	5.189717e-56	1.713823e-53
MsaG002420	MsaG044934	0.803473	5.770922e-49	8.444782e-47
MsaG002420	MsaG045950	0.805114	2.637880e-49	4.009737e-47
MsaG002420	MsaG045974	0.811906	9.509262e-51	1.701437e-48
MsaG002420	MsaG045977	0.804859	2.979612e-49	4.502614e-47
MsaG002420	MsaG046107	0.808660	4.731670e-50	7.823539e-48
MsaG002420	MsaG046247	0.819957	1.548327e-52	3.401466e-50
MsaG002420	MsaG046554	0.803134	6.780750e-49	9.845034e-47
MsaG002420	MsaG046895	0.813892	3.507380e-51	6.593989e-49
MsaG002420	MsaG047135	0.853693	3.885026e-61	2.395483e-58
MsaG002420	MsaG002466	0.820522	1.150273e-52	2.565093e-50
MsaG002420	MsaG003278	0.836916	1.294367e-56	4.592543e-54
MsaG002420	MsaG001460	0.863645	4.270849e-64	3.823517e-61
MsaG002420	MsaG009602	0.802738	8.179413e-49	1.176768e-46
MsaG002420	MsaG016780	0.803510	5.670245e-49	8.304635e-47
MsaG002420	MsaG012156	0.824580	1.324368e-53	3.293335e-51
MsaG002420	MsaG013404	0.841810	7.039461e-58	2.909621e-55
MsaG002420	MsaG029395	0.803392	5.999398e-49	8.762656e-47
MsaG002420	MsaG025855	0.813857	3.571317e-51	6.708223e-49
MsaG002420	MsaG031628	0.800221	2.666828e-48	3.623646e-46
MsaG002420	MsaG040619	0.810358	2.052164e-50	3.535278e-48
MsaG002420	MsaG040778	0.801423	1.519647e-48	2.121760e-46
MsaG002420	MsaG042989	0.808670	4.708054e-50	7.786551e-48
MsaG002420	MsaG042303	0.819134	2.380544e-52	5.117681e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002420	MtrunA17_Chr1g0174271	91.821	379	19	4	2	372	4	378	0.0	694
MsaG002420	MtrunA17_Chr2g0329041	41.745	424	182	12	1	372	1	411	5.27e-85	264
MsaG002420	MtrunA17_Chr7g0258181	45.213	376	133	8	1	364	1	315	4.26e-82	253
MsaG002420	MtrunA17_Chr4g0032951	50.958	261	107	8	121	369	181	432	6.42e-76	241
MsaG002420	MtrunA17_Chr3g0087771	37.129	404	185	15	7	369	24	399	5.30e-56	188
MsaG002420	MtrunA17_Chr8g0351881	38.830	376	193	9	7	364	32	388	5.18e-52	177
MsaG002420	MtrunA17_Chr4g0014771	70.787	89	24	1	276	364	104	190	1.69e-38	136
MsaG002420	MtrunA17_Chr1g0213791	42.353	255	124	9	120	364	96	337	2.10e-38	140
MsaG002420	MtrunA17_Chr4g0074161	59.420	69	27	1	291	359	205	272	3.51e-18	85.5
MsaG002420	MtrunA17_Chr1g0190731	53.333	75	34	1	285	359	186	259	5.16e-17	81.6
MsaG002420	MtrunA17_Chr1g0152131	53.425	73	34	0	290	362	258	330	8.59e-17	81.3
MsaG002420	MtrunA17_Chr3g0131771	56.716	67	29	0	292	358	147	213	6.43e-16	77.8
MsaG002420	MtrunA17_Chr5g0421111	53.521	71	33	0	292	362	365	435	1.31e-15	78.2
MsaG002420	MtrunA17_Chr3g0144641	55.072	69	31	0	292	360	191	259	1.89e-15	77.0
MsaG002420	MtrunA17_Chr7g0234761	53.623	69	32	0	292	360	317	385	3.21e-15	77.0
MsaG002420	MtrunA17_Chr8g0365941	53.623	69	32	0	292	360	305	373	4.06e-15	76.6
MsaG002420	MtrunA17_Chr8g0339091	53.731	67	31	0	292	358	291	357	8.86e-15	75.5
MsaG002420	MtrunA17_Chr4g0035101	50.000	76	36	1	285	360	138	211	1.32e-14	74.3
MsaG002420	MtrunA17_Chr8g0385911	52.174	69	33	0	292	360	145	213	1.53e-14	73.9
MsaG002420	MtrunA17_Chr8g0363921	50.746	67	33	0	292	358	151	217	8.73e-14	70.9
MsaG002420	MtrunA17_Chr5g0415291	49.254	67	34	0	292	358	112	178	1.28e-12	67.0
MsaG002420	MtrunA17_Chr7g0258161	46.377	69	37	0	292	360	173	241	3.90e-12	66.6
MsaG002420	MtrunA17_Chr1g0152651	54.545	66	29	1	291	356	273	337	4.67e-12	66.6
MsaG002420	MtrunA17_Chr3g0134001	42.697	89	46	2	274	358	149	236	5.81e-12	65.5
MsaG002420	MtrunA17_Chr3g0134741	54.545	66	29	1	291	356	228	292	6.64e-12	65.9
MsaG002420	MtrunA17_Chr1g0174161	44.928	69	38	0	292	360	160	228	1.43e-11	65.1
MsaG002420	MtrunA17_Chr6g0484271	46.269	67	36	0	292	358	155	221	2.81e-11	63.5
MsaG002420	MtrunA17_Chr1g0184841	53.333	75	34	1	285	359	113	186	5.58e-11	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002420	AT2G42280.1	47.558	389	151	7	1	369	1	356	2.48e-99	299
MsaG002420	AT2G42280.3	47.185	373	144	7	1	353	1	340	6.03e-91	278
MsaG002420	AT2G42280.2	41.337	329	140	7	1	309	1	296	6.10e-58	191
MsaG002420	AT1G51140.1	36.504	389	189	13	7	364	15	376	2.41e-57	191
MsaG002420	AT1G05805.1	42.510	247	107	10	123	364	139	355	5.41e-44	156
MsaG002420	AT1G35460.1	70.115	87	24	1	278	364	169	253	1.41e-39	141
MsaG002420	AT2G43140.1	62.857	105	38	1	261	364	102	206	2.96e-38	137
MsaG002420	AT2G43140.2	42.353	255	111	10	123	369	82	308	3.48e-38	139
MsaG002420	AT4G09180.1	67.045	88	27	1	278	365	172	257	7.32e-36	132
MsaG002420	AT1G35460.2	79.245	53	9	1	278	330	169	219	1.43e-23	98.2
MsaG002420	AT2G24260.2	60.870	69	26	1	291	359	34	101	6.42e-19	85.5
MsaG002420	AT2G24260.1	60.870	69	26	1	291	359	137	204	2.12e-18	85.9
MsaG002420	AT4G30980.1	57.333	75	30	2	285	359	124	196	4.93e-18	84.3
MsaG002420	AT4G30980.2	57.333	75	30	2	285	359	172	244	1.00e-17	84.0
MsaG002420	AT5G58010.1	55.072	69	30	1	291	359	98	165	4.97e-17	81.3
MsaG002420	AT4G34530.1	56.522	69	30	0	292	360	172	240	2.37e-16	79.7
MsaG002420	AT1G10120.2	54.930	71	32	0	292	362	206	276	5.98e-16	79.0
MsaG002420	AT1G10120.1	54.930	71	32	0	292	362	206	276	5.98e-16	79.0
MsaG002420	AT5G50915.3	56.716	67	29	0	292	358	136	202	8.79e-16	77.0
MsaG002420	AT5G50915.4	56.716	67	29	0	292	358	136	202	8.79e-16	77.0
MsaG002420	AT5G50915.1	56.716	67	29	0	292	358	136	202	1.06e-15	77.0
MsaG002420	AT5G50915.2	56.716	67	29	0	292	358	136	202	1.06e-15	77.0
MsaG002420	AT1G68920.3	52.113	71	34	0	292	362	302	372	2.23e-15	77.8
MsaG002420	AT1G68920.1	52.113	71	34	0	292	362	303	373	2.39e-15	77.8
MsaG002420	AT1G68920.4	52.113	71	34	0	292	362	303	373	2.39e-15	77.8
MsaG002420	AT1G68920.2	52.113	71	34	0	292	362	303	373	2.39e-15	77.8
MsaG002420	AT1G25330.1	50.000	76	37	1	283	358	96	170	5.47e-15	73.9
MsaG002420	AT1G26260.5	55.224	67	30	0	292	358	201	267	1.05e-14	75.1
MsaG002420	AT3G07340.2	53.731	67	31	0	292	358	258	324	1.21e-14	75.5
MsaG002420	AT3G07340.1	53.731	67	31	0	292	358	258	324	1.26e-14	75.5
MsaG002420	AT1G26260.4	55.224	67	30	0	292	358	223	289	1.34e-14	75.1
MsaG002420	AT1G26260.1	55.224	67	30	0	292	358	223	289	1.34e-14	75.1
MsaG002420	AT1G26260.6	55.224	67	30	0	292	358	223	289	1.34e-14	75.1
MsaG002420	AT1G26260.2	55.224	67	30	0	292	358	223	289	1.34e-14	75.1
MsaG002420	AT1G26260.3	55.224	67	30	0	292	358	172	238	1.36e-14	74.7
MsaG002420	AT5G48560.1	47.368	76	40	0	292	367	301	376	1.84e-14	75.1
MsaG002420	AT5G48560.2	47.368	76	40	0	292	367	301	376	1.91e-14	74.7
MsaG002420	AT3G23690.1	50.725	69	34	0	292	360	191	259	1.06e-13	72.0
MsaG002420	AT1G59640.1	50.746	67	33	0	292	358	136	202	2.51e-13	69.7
MsaG002420	AT2G42300.1	46.053	76	40	1	286	360	178	253	2.81e-13	70.5
MsaG002420	AT2G42300.4	46.053	76	40	1	286	360	178	253	3.10e-13	69.7
MsaG002420	AT1G18400.2	49.254	67	34	0	292	358	145	211	3.19e-13	69.3
MsaG002420	AT1G73830.2	49.254	67	34	0	292	358	147	213	3.95e-13	69.3
MsaG002420	AT1G73830.1	49.254	67	34	0	292	358	147	213	4.23e-13	69.3
MsaG002420	AT1G18400.1	49.254	67	34	0	292	358	145	211	4.82e-13	68.9
MsaG002420	AT2G18300.1	47.826	69	36	0	292	360	185	253	6.53e-13	69.3
MsaG002420	AT2G18300.2	47.826	69	36	0	292	360	185	253	6.62e-13	69.3
MsaG002420	AT4G36540.2	45.455	77	40	1	282	358	133	207	6.93e-13	68.9
MsaG002420	AT4G36540.1	45.455	77	40	1	282	358	133	207	6.99e-13	68.9
MsaG002420	AT1G59640.2	50.746	67	33	0	292	358	136	202	8.98e-13	69.3
MsaG002420	AT3G57800.2	46.479	71	38	0	290	360	202	272	1.04e-12	69.3
MsaG002420	AT2G18300.3	47.826	69	36	0	292	360	185	253	1.04e-12	68.9
MsaG002420	AT1G27740.1	52.857	70	32	1	287	356	162	230	5.11e-12	65.9
MsaG002420	AT4G33880.1	54.545	66	29	1	291	356	265	329	5.70e-12	66.6
MsaG002420	AT2G14760.1	54.545	66	29	1	291	356	236	300	5.95e-12	66.6
MsaG002420	AT5G62610.2	46.269	67	36	0	292	358	153	219	1.01e-11	65.5
MsaG002420	AT5G62610.1	46.269	67	36	0	292	358	153	219	1.01e-11	65.5
MsaG002420	AT4G02590.2	53.333	75	34	1	285	359	139	212	5.50e-11	63.5
MsaG002420	AT4G02590.1	53.333	75	34	1	285	359	139	212	5.50e-11	63.5
MsaG002420	AT4G02590.3	53.333	75	34	1	285	359	76	149	6.18e-11	62.8

Find 69 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTGCTATGGATGGTTCTTT+TGG	0.221242	1:+40714992	MsaT002420.1:CDS
CACAACCAATCCAATTCTTC+TGG	0.235104	1:+40714734	MsaT002420.1:CDS
GGAAACTATGCCACGGTAAA+TGG	0.245415	1:+40716177	MsaT002420.1:CDS
TGTTCTAAAGAAATGAATTC+TGG	0.255357	1:+40714911	MsaT002420.1:CDS
TCCAACATTTCCTTTCAAAA+TGG	0.262412	1:+40715112	MsaT002420.1:CDS
CTGGATTCCCCTATAGTTCT+TGG	0.264196	1:+40716376	MsaT002420.1:CDS
ACATCACATGATAAGAGTTT+TGG	0.326645	1:+40715046	MsaT002420.1:CDS
ATTTGTACCTTATCCATGTT+TGG	0.331656	1:-40716992	None:intergenic
TTTGGATTGGTTGGTTCATT+GGG	0.337311	1:+40715010	MsaT002420.1:CDS
ACGAAGCAACCCAGAAGAAT+TGG	0.359803	1:-40714744	None:intergenic
CCATTGCTACCTCCGTCATC+AGG	0.366384	1:-40716333	None:intergenic
AAAGAAATGAATTCTGGTTA+TGG	0.376238	1:+40714917	MsaT002420.1:CDS
ATAGTTTCCAACACCTTTCA+TGG	0.387270	1:-40716163	None:intergenic
TCAAGAAATGCTTCTTCGTT+GGG	0.389766	1:+40716258	MsaT002420.1:CDS
ACTCATCAGCGTGGAGGGCT+TGG	0.396464	1:+40716568	MsaT002420.1:intron
GTGTCGTTCCAAGAACTATA+GGG	0.397091	1:-40716384	None:intergenic
ATTGGTTGGTTCATTGGGAA+TGG	0.419938	1:+40715015	MsaT002420.1:CDS
CATTATCCTAGACATGGTTC+TGG	0.422292	1:+40714956	MsaT002420.1:CDS
TGGTTCAAATCTTCTTAGAC+AGG	0.423641	1:+40715066	MsaT002420.1:CDS
AGTGTCGTTCCAAGAACTAT+AGG	0.434493	1:-40716385	None:intergenic
TTCTACTTCAAGTTCTGCTA+TGG	0.441169	1:+40714979	MsaT002420.1:CDS
TTCAAGAAATGCTTCTTCGT+TGG	0.443867	1:+40716257	MsaT002420.1:CDS
ACAACCAATCCAATTCTTCT+GGG	0.461387	1:+40714735	MsaT002420.1:CDS
AACGAAGAAGCATTTCTTGA+AGG	0.468589	1:-40716255	None:intergenic
ACCCTCTCGGCAATGCTTCG+AGG	0.468775	1:-40716727	None:intergenic
ATCATCTCAGATGAAGTGTT+TGG	0.470848	1:-40716628	None:intergenic
ACTTCAAGTTCTGCTATGGA+TGG	0.477883	1:+40714983	MsaT002420.1:CDS
ATGAATTCTGGTTATGGTGC+TGG	0.478438	1:+40714923	MsaT002420.1:CDS
TCCTCGAAGCATTGCCGAGA+GGG	0.481258	1:+40716726	MsaT002420.1:CDS
AATGGCGATTCTACTCACTA+TGG	0.489783	1:+40716351	MsaT002420.1:CDS
GCTTGTTCCAAACATGGATA+AGG	0.495622	1:+40716985	MsaT002420.1:CDS
TCACCAGAAGAAGGAAAAGA+AGG	0.496661	1:-40714806	None:intergenic
ACGAAGAAGCATTTCTTGAA+GGG	0.507126	1:-40716254	None:intergenic
GATTCTACTCACTATGGCTC+TGG	0.511407	1:+40716357	MsaT002420.1:CDS
CACATCAGACATGTTGGACT+TGG	0.512180	1:+40717125	MsaT002420.1:CDS
ATGTTGGAGAAAAGACCAGC+AGG	0.517169	1:-40715097	None:intergenic
ATCTCAGTGGTTTGAAAAGA+GGG	0.517303	1:+40716424	MsaT002420.1:CDS
AATCTCAGTGGTTTGAAAAG+AGG	0.526692	1:+40716423	MsaT002420.1:CDS
CCACCTCATTATCCTAGACA+TGG	0.529372	1:+40714950	MsaT002420.1:CDS
TTATTAGAATCACCAGAAGA+AGG	0.532913	1:-40714815	None:intergenic
GCAACCCAGAAGAATTGGAT+TGG	0.541202	1:-40714739	None:intergenic
AGACAGGGTAGTTCCCCTGC+TGG	0.543236	1:+40715082	MsaT002420.1:CDS
AACTAACACATCAGACATGT+TGG	0.546138	1:+40717119	MsaT002420.1:CDS
GCAAGAGCTTGTTCCAAACA+TGG	0.548846	1:+40716979	MsaT002420.1:CDS
GCCACGGTAAATGGTAGTAA+TGG	0.558605	1:+40716186	MsaT002420.1:CDS
CTAAGATCAGTGAAAGAATG+AGG	0.559063	1:+40716951	MsaT002420.1:CDS
AGCTGAGTTGAGTGTTCAGT+CGG	0.564670	1:-40716230	None:intergenic
TGTAAAATTCGAGCGAAACG+AGG	0.565652	1:+40716691	MsaT002420.1:CDS
TTCATCTGAGATGATTGCTA+TGG	0.566845	1:+40716636	MsaT002420.1:CDS
GAGCAAACTGCAAATGTATG+AGG	0.578835	1:+40717845	MsaT002420.1:CDS
CCTGATGACGGAGGTAGCAA+TGG	0.590547	1:+40716333	MsaT002420.1:CDS
CATTGCTACCTCCGTCATCA+GGG	0.595144	1:-40716332	None:intergenic
GTAGAACCAGAACCATGTCT+AGG	0.597203	1:-40714962	None:intergenic
GAACCATGTCTAGGATAATG+AGG	0.601649	1:-40714953	None:intergenic
TAAACAAAACCATACCCTCT+CGG	0.609076	1:-40716740	None:intergenic
GTGTTCAGTCGGTTAATAGA+CGG	0.618315	1:-40716219	None:intergenic
CATCTCAGAAATAGATAGTG+AGG	0.622320	1:+40716293	MsaT002420.1:CDS
GCCATTACTACCATTTACCG+TGG	0.622329	1:-40716187	None:intergenic
GGTTCAAATCTTCTTAGACA+GGG	0.631058	1:+40715067	MsaT002420.1:CDS
GAAGCAACTAGCCCTGATGA+CGG	0.637823	1:+40716321	MsaT002420.1:CDS
TGTCGTTCCAAGAACTATAG+GGG	0.638078	1:-40716383	None:intergenic
TGTTGGAGAAAAGACCAGCA+GGG	0.641864	1:-40715096	None:intergenic
GTTGGAGAAAAGACCAGCAG+GGG	0.676212	1:-40715095	None:intergenic
AGGTGTTGGAAACTATGCCA+CGG	0.680755	1:+40716170	MsaT002420.1:CDS
ATCCTCGAAGCATTGCCGAG+AGG	0.702830	1:+40716725	MsaT002420.1:CDS
CAAATGTATGAGGATGCAGA+AGG	0.707448	1:+40717855	MsaT002420.1:CDS
GCAACTAGCCCTGATGACGG+AGG	0.713476	1:+40716324	MsaT002420.1:CDS
CCATGTCTAGGATAATGAGG+TGG	0.720480	1:-40714950	None:intergenic
TCATTCACAGAAAATCTCAG+TGG	0.729969	1:+40716411	MsaT002420.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	40714710	40717894	40714710	ID=MsaG002420
Chr1	mRNA	40714710	40717894	40714710	ID=MsaT002420.1;Parent=MsaG002420
Chr1	exon	40714710	40715133	40714710	ID=MsaT002420.1.exon1;Parent=MsaT002420.1
Chr1	CDS	40714710	40715133	40714710	ID=cds.MsaT002420.1;Parent=MsaT002420.1
Chr1	exon	40716154	40716482	40716154	ID=MsaT002420.1.exon2;Parent=MsaT002420.1
Chr1	CDS	40716154	40716482	40716154	ID=cds.MsaT002420.1;Parent=MsaT002420.1
Chr1	exon	40716577	40716747	40716577	ID=MsaT002420.1.exon3;Parent=MsaT002420.1
Chr1	CDS	40716577	40716747	40716577	ID=cds.MsaT002420.1;Parent=MsaT002420.1
Chr1	exon	40716941	40717006	40716941	ID=MsaT002420.1.exon4;Parent=MsaT002420.1
Chr1	CDS	40716941	40717006	40716941	ID=cds.MsaT002420.1;Parent=MsaT002420.1
Chr1	exon	40717117	40717185	40717117	ID=MsaT002420.1.exon5;Parent=MsaT002420.1
Chr1	CDS	40717117	40717185	40717117	ID=cds.MsaT002420.1;Parent=MsaT002420.1
Chr1	exon	40717829	40717894	40717829	ID=MsaT002420.1.exon6;Parent=MsaT002420.1
Chr1	CDS	40717829	40717894	40717829	ID=cds.MsaT002420.1;Parent=MsaT002420.1

Gene Sequence

>MsaT002420.1

ATGGATTCTAATACTCATCAACAACACAACCAATCCAATTCTTCTGGGTTGCTTCGTTTTCGTTCTGCACCTAGTTCACTGTTTCAAAATCTCACACCTTCTTTTCCTTCTTCTGGTGATTCTAATAAAGTTACTAAACATTTTTGGGATGGTTCTGAATCAGAGAGATTTGTGAGTAACGATAATATTTCTAGTTCATCTTGTTCTAAAGAAATGAATTCTGGTTATGGTGCTGGTTTGCCACCTCATTATCCTAGACATGGTTCTGGTTCTACTTCAAGTTCTGCTATGGATGGTTCTTTTGGATTGGTTGGTTCATTGGGAATGGATCAAGAAACATCACATGATAAGAGTTTTGGTTCAAATCTTCTTAGACAGGGTAGTTCCCCTGCTGGTCTTTTCTCCAACATTTCCTTTCAAAATGGGTTTTCTACCATGAAAGGTGTTGGAAACTATGCCACGGTAAATGGTAGTAATGGCGAACTTAGTCCGTCTATTAACCGACTGAACACTCAACTCAGCTTCCCTTCAAGAAATGCTTCTTCGTTGGGAATATTGTCACACATCTCAGAAATAGATAGTGAGGACATTGAAGCAACTAGCCCTGATGACGGAGGTAGCAATGGCGATTCTACTCACTATGGCTCTGGATTCCCCTATAGTTCTTGGAACGACACTCAATCATTCACAGAAAATCTCAGTGGTTTGAAAAGAGGGCGAAGCAGTAATGAAAAAATGTTTTCTGATATTCAGCGTGGAGGGCTTGGAAATCAAGTTCATACATTATCGCATCAGTTGAGTTTACCAAACACTTCATCTGAGATGATTGCTATGGAGAAGTTGTTTCAGTTTCCAGATTCTGTTCCTTGTAAAATTCGAGCGAAACGAGGTTGCGCTACTCATCCTCGAAGCATTGCCGAGAGGGTAAGAAGAACTAAGATCAGTGAAAGAATGAGGAAATTGCAAGAGCTTGTTCCAAACATGGATAAGCAAACTAACACATCAGACATGTTGGACTTGGCTGTTGATTACATCAAAAATCTTCAAAAACAATTCAAGTCCCTAAGTGAAAAACGAGCAAACTGCAAATGTATGAGGATGCAGAAGGCAGAACAAAGAAGCTAA

Protein sequence

>MsaT002420.1

MDSNTHQQHNQSNSSGLLRFRSAPSSLFQNLTPSFPSSGDSNKVTKHFWDGSESERFVSNDNISSSSCSKEMNSGYGAGLPPHYPRHGSGSTSSSAMDGSFGLVGSLGMDQETSHDKSFGSNLLRQGSSPAGLFSNISFQNGFSTMKGVGNYATVNGSNGELSPSINRLNTQLSFPSRNASSLGILSHISEIDSEDIEATSPDDGGSNGDSTHYGSGFPYSSWNDTQSFTENLSGLKRGRSSNEKMFSDIQRGGLGNQVHTLSHQLSLPNTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKNLQKQFKSLSEKRANCKCMRMQKAEQRS*