AlfalfaGEDB | MsaG002455

M. sativa ssp. caerulea / MsaG002455

KEGG: -
GO: -
PFAM: PF13912.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002455	KEH41670.1	71.600	250	43	4	20	260	16	246	1.74e-113	337

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002455	tr\|A0A072VU80\|A0A072VU80_MEDTR	71.600	250	43	4	20	260	16	246	8.31e-114	337

TFs/TRs:

Gene ID	Type	Classification
MsaG002455	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000680	MsaG002455	0.821026	8.823323e-53	1.994043e-50
MsaG001208	MsaG002455	0.861375	2.116708e-63	1.734107e-60
MsaG001328	MsaG002455	0.844807	1.126551e-58	5.129725e-56
MsaG002495	MsaG002455	0.821892	5.579551e-53	1.290191e-50
MsaG002620	MsaG002455	0.807464	8.479319e-50	1.362255e-47
MsaG002966	MsaG002455	0.835047	3.836676e-56	1.286974e-53
MsaG003289	MsaG002455	0.822200	4.737958e-53	1.104650e-50
MsaG003444	MsaG002455	0.824881	1.125345e-53	2.821624e-51
MsaG003715	MsaG002455	0.803397	5.984860e-49	8.742404e-47
MsaG004441	MsaG002455	0.883072	1.305390e-70	2.724135e-67
MsaG004757	MsaG002455	0.830784	4.350691e-55	1.287677e-52
MsaG005214	MsaG002455	0.807813	7.155698e-50	1.159279e-47
MsaG006122	MsaG002455	0.813965	3.380697e-51	6.367426e-49
MsaG007149	MsaG002455	0.820043	1.479385e-52	3.257529e-50
MsaG008515	MsaG002455	0.808512	5.087552e-50	8.381824e-48
MsaG010252	MsaG002455	0.876320	3.191993e-68	4.868961e-65
MsaG011050	MsaG002455	0.809707	2.828748e-50	4.796667e-48
MsaG011098	MsaG002455	0.853223	5.293106e-61	3.209786e-58
MsaG012389	MsaG002455	0.822657	3.714126e-53	8.766778e-51
MsaG012633	MsaG002455	0.812671	6.484845e-51	1.182452e-48
MsaG041919	MsaG002455	0.807839	7.067180e-50	1.145626e-47
MsaG042071	MsaG002455	0.813517	4.239133e-51	7.895029e-49
MsaG043171	MsaG002455	0.807396	8.765580e-50	1.405932e-47
MsaG045952	MsaG002455	0.869186	7.577810e-66	8.486765e-63
MsaG046614	MsaG002455	0.808947	4.110055e-50	6.842932e-48
MsaG047119	MsaG002455	0.827982	2.070233e-54	5.658410e-52
MsaG047139	MsaG002455	0.829557	8.646010e-55	2.470702e-52
MsaG000818	MsaG002455	0.878941	3.925626e-69	6.747809e-66
MsaG002455	MsaG002323	0.813496	4.283022e-51	7.972350e-49
MsaG002455	MsaG001949	0.818093	4.090124e-52	8.557448e-50
MsaG002455	MsaG008516	0.814524	2.548504e-51	4.867594e-49
MsaG002455	MsaG008811	0.812178	8.300758e-51	1.495130e-48
MsaG002455	MsaG008232	0.806767	1.189400e-49	1.879583e-47
MsaG002455	MsaG023010	0.867821	2.081470e-65	2.204186e-62
MsaG002455	MsaG026065	0.803742	5.079950e-49	7.480175e-47
MsaG002455	MsaG028049	0.807603	7.924091e-50	1.277274e-47
MsaG002455	MsaG033146	0.807957	6.669576e-50	1.084269e-47
MsaG002455	MsaG031186	0.818538	3.246729e-52	6.871460e-50
MsaG002455	MsaG032445	0.822416	4.223916e-53	9.905529e-51
MsaG002455	MsaG032718	0.810493	1.919190e-50	3.317111e-48
MsaG002455	MsaG030836	0.838007	6.820690e-57	2.502061e-54
MsaG002455	MsaG036754	0.885993	1.088404e-71	2.617715e-68
MsaG002455	MsaG037511	0.803655	5.293486e-49	7.778852e-47
MsaG002455	MsaG038026	0.806520	1.340092e-49	2.105430e-47
MsaG002455	MsaG039898	0.804893	2.932594e-49	4.434942e-47
MsaG002455	MsaG040780	0.800720	2.112066e-48	2.902542e-46
MsaG002455	MsaG042416	0.819452	2.016315e-52	4.370969e-50
MsaG002455	MsaG042876	0.862347	1.070252e-63	9.104084e-61
MsaG012671	MsaG002455	0.808597	4.878895e-50	8.054559e-48
MsaG013280	MsaG002455	0.807844	7.049606e-50	1.142930e-47
MsaG013779	MsaG002455	0.817156	6.635353e-52	1.355211e-49
MsaG014451	MsaG002455	0.801201	1.686683e-48	2.343099e-46
MsaG016772	MsaG002455	0.802960	7.362597e-49	1.064690e-46
MsaG016980	MsaG002455	0.857021	4.216357e-62	2.931608e-59
MsaG017035	MsaG002455	0.846344	4.336225e-59	2.077339e-56
MsaG017311	MsaG002455	0.851383	1.757207e-60	9.988688e-58
MsaG017382	MsaG002455	0.803903	4.705295e-49	6.954166e-47
MsaG017773	MsaG002455	0.837513	9.123602e-57	3.296714e-54
MsaG018269	MsaG002455	0.828080	1.960881e-54	5.374209e-52
MsaG019105	MsaG002455	0.801308	1.603896e-48	2.233535e-46
MsaG019351	MsaG002455	0.831780	2.483252e-55	7.565890e-53
MsaG020130	MsaG002455	0.805791	1.905336e-49	2.942276e-47
MsaG020161	MsaG002455	0.844815	1.121228e-58	5.106750e-56
MsaG020747	MsaG002455	0.818964	2.600992e-52	5.566651e-50
MsaG023535	MsaG002455	0.801625	1.382187e-48	1.938701e-46
MsaG023626	MsaG002455	0.808761	4.503497e-50	7.464388e-48
MsaG023588	MsaG002455	0.825144	9.759823e-54	2.464788e-51
MsaG023816	MsaG002455	0.806341	1.461060e-49	2.285829e-47
MsaG024453	MsaG002455	0.811460	1.187568e-50	2.101692e-48
MsaG026903	MsaG002455	0.853168	5.487501e-61	3.321151e-58
MsaG027055	MsaG002455	0.802803	7.931146e-49	1.142757e-46
MsaG027863	MsaG002455	0.834177	6.332926e-56	2.069653e-53
MsaG028161	MsaG002455	0.832732	1.446437e-55	4.530555e-53
MsaG028388	MsaG002455	0.866367	6.028018e-65	6.015664e-62
MsaG029421	MsaG002455	0.806147	1.604627e-49	2.498833e-47
MsaG031124	MsaG002455	0.826953	3.643497e-54	9.675686e-52
MsaG031248	MsaG002455	0.812545	6.909216e-51	1.255919e-48
MsaG033214	MsaG002455	0.820972	9.076664e-53	2.048364e-50
MsaG033771	MsaG002455	0.829673	8.103546e-55	2.323339e-52
MsaG034047	MsaG002455	0.821295	7.652559e-53	1.741759e-50
MsaG039468	MsaG002455	0.814248	2.930862e-51	5.559351e-49
MsaG040733	MsaG002455	0.836028	2.172569e-56	7.504881e-54

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002455	MtrunA17_Chr1g0174861	71.600	250	43	4	20	260	16	246	1.60e-117	337
MsaG002455	MtrunA17_Chr1g0174871	60.364	275	84	7	20	278	20	285	1.40e-92	275
MsaG002455	MtrunA17_Chr1g0169521	36.486	296	131	9	29	277	30	315	1.22e-41	145
MsaG002455	MtrunA17_Chr1g0169561	34.576	295	136	8	29	276	30	314	1.83e-38	137
MsaG002455	MtrunA17_Chr1g0174001	39.500	200	87	7	106	277	1	194	3.02e-27	104
MsaG002455	MtrunA17_Chr1g0172961	32.636	239	129	9	29	238	23	258	5.39e-25	100
MsaG002455	MtrunA17_Chr1g0172861	31.868	273	129	13	29	268	23	271	1.27e-23	97.1
MsaG002455	MtrunA17_Chr7g0214511	33.600	250	111	10	49	277	71	286	1.10e-22	94.7
MsaG002455	MtrunA17_Chr4g0037041	41.270	126	57	5	28	144	22	139	5.92e-19	82.4
MsaG002455	MtrunA17_Chr5g0448221	34.177	158	73	8	33	166	54	204	1.60e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 50 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCTTGGTCTCGTATCTTAT+TGG	0.208428	1:+41595647	None:intergenic
AGCACCAACAACTTTCTTAA+AGG	0.236987	1:-41595869	MsaT002455.1:CDS
TACCCTTCTTCGAATCATTT+TGG	0.242767	1:+41595726	None:intergenic
AAACAAAATTAAACACTAAA+TGG	0.270394	1:+41595223	None:intergenic
ATAATCCCAGCTCCGTTTCT+TGG	0.287583	1:+41595631	None:intergenic
GTTCTCTACATTGTTATCAT+TGG	0.335954	1:+41595361	None:intergenic
GTTTGAGTAATAAGTCCTTT+TGG	0.343516	1:+41595410	None:intergenic
TGAATCACCGTGACTGTAAA+AGG	0.346155	1:-41595532	MsaT002455.1:CDS
TGTTAACATTGCTGAAATAA+TGG	0.391363	1:-41595591	MsaT002455.1:CDS
TTTACCTTTAAGAAAGTTGT+TGG	0.419418	1:+41595865	None:intergenic
AACAAACACAAACATGCTAA+TGG	0.425038	1:-41595839	MsaT002455.1:CDS
TAAGAAAGTTGTTGGTGCTA+TGG	0.440297	1:+41595873	None:intergenic
CTCTACATTGTTATCATTGG+AGG	0.445625	1:+41595364	None:intergenic
CTTTGAATGGACACATGAAA+TGG	0.459517	1:-41595754	MsaT002455.1:CDS
TTGGTCTCGTATCTTATTGG+TGG	0.473127	1:+41595650	None:intergenic
ACGGTGATTCACATTAAGAT+TGG	0.473501	1:+41595544	None:intergenic
CAATGGATGGAAACTGATCT+AGG	0.474117	1:+41595690	None:intergenic
ATCCGTTTCATCACCTTCAT+CGG	0.483860	1:+41595334	None:intergenic
TGGTGCTATGGAATTGTTTG+TGG	0.484496	1:+41595885	None:intergenic
TGTGCTAGAGAATTCACAAC+TGG	0.492819	1:-41595923	MsaT002455.1:CDS
CAAATACTTTGTCAGATCAA+TGG	0.494617	1:+41595673	None:intergenic
GAATTGTTTGTGGCCGCCGA+GGG	0.497780	1:+41595895	None:intergenic
TGAATAGAATTATGAGAAGA+AGG	0.504138	1:+41596025	None:intergenic
TTCATGTGTTCTTTGCAGCA+AGG	0.509354	1:-41595795	MsaT002455.1:CDS
CAGCCAAAATGATTCGAAGA+AGG	0.519454	1:-41595729	MsaT002455.1:CDS
TACCGATGAAGGTGATGAAA+CGG	0.519602	1:-41595336	MsaT002455.1:CDS
CATGCTAATGGTATTAAGAT+CGG	0.524324	1:-41595827	MsaT002455.1:CDS
GTGAGATTAAAGATTCCAAA+AGG	0.530313	1:-41595425	MsaT002455.1:CDS
ACATTGTTATCATTGGAGGC+AGG	0.530674	1:+41595368	None:intergenic
ACGAGACCAAGAAACGGAGC+TGG	0.539882	1:-41595637	MsaT002455.1:CDS
GGAATTGTTTGTGGCCGCCG+AGG	0.556033	1:+41595894	None:intergenic
AGCCAAAATGATTCGAAGAA+GGG	0.558347	1:-41595728	MsaT002455.1:CDS
TTCACAACTGGTAATGCCCT+CGG	0.558819	1:-41595911	MsaT002455.1:CDS
ATGAAGGTGATGAAACGGAT+GGG	0.561647	1:-41595331	MsaT002455.1:CDS
GCAAAGAACACATGAATGGC+TGG	0.562308	1:+41595802	None:intergenic
GTAGAGAACAATACCGATGA+AGG	0.568109	1:-41595347	MsaT002455.1:CDS
CGAGACCAAGAAACGGAGCT+GGG	0.594941	1:-41595636	MsaT002455.1:CDS
CAATGAAAAGAACAGGTTGG+TGG	0.599420	1:-41595447	MsaT002455.1:CDS
CAAAATTAAACACTAAATGG+TGG	0.600626	1:+41595226	None:intergenic
TACTTTGTCAGATCAATGGA+TGG	0.603001	1:+41595677	None:intergenic
TGAAGGTGATGAAACGGATG+GGG	0.603593	1:-41595330	MsaT002455.1:CDS
TAAGATACGAGACCAAGAAA+CGG	0.610128	1:-41595643	MsaT002455.1:CDS
GATGAAGGTGATGAAACGGA+TGG	0.616100	1:-41595332	MsaT002455.1:CDS
AAACAATGAAAAGAACAGGT+TGG	0.620052	1:-41595450	MsaT002455.1:CDS
TGCTGCAAAGAACACATGAA+TGG	0.640126	1:+41595798	None:intergenic
TAACATTGCTGAAATAATGG+TGG	0.655107	1:-41595588	MsaT002455.1:CDS
ACAACTGGTAATGCCCTCGG+CGG	0.704742	1:-41595908	MsaT002455.1:CDS
GAAAATGAGAAACATCAACA+AGG	0.726705	1:-41595971	MsaT002455.1:CDS
GATGTGAAGATCAATGAACA+AGG	0.760498	1:-41595479	MsaT002455.1:CDS
GTGAAGATCAATGAACAAGG+TGG	0.773369	1:-41595476	MsaT002455.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	41595238	41596077	41595238	ID=MsaG002455
Chr1	mRNA	41595238	41596077	41595238	ID=MsaT002455.1;Parent=MsaG002455
Chr1	exon	41595238	41596077	41595238	ID=MsaT002455.1.exon1;Parent=MsaT002455.1
Chr1	CDS	41595238	41596077	41595238	ID=cds.MsaT002455.1;Parent=MsaT002455.1

Gene Sequence

>MsaT002455.1

ATGATGAAGAATTCTTTTTCTTCTTCTTCACCTTCTTCTCATAATTCTATTCATCATAAGCAAAAAAGCAATGTTGTTGATCATGAAAATGAGAAACATCAACAAGGTGCAAGACTTCACAAATGTGATTTGTGTGCTAGAGAATTCACAACTGGTAATGCCCTCGGCGGCCACAAACAATTCCATAGCACCAACAACTTTCTTAAAGGTAAAATCAACAAACACAAACATGCTAATGGTATTAAGATCGGAACCAGCCATTCATGTGTTCTTTGCAGCAAGGCTTTTTCATCGAAAAAAGCTTTGAATGGACACATGAAATGGCACAGCCAAAATGATTCGAAGAAGGGTAGTAACAATTACGACCTAGATCAGTTTCCATCCATTGATCTGACAAAGTATTTGCCACCAATAAGATACGAGACCAAGAAACGGAGCTGGGATTATATTCTTGATGTTGAAACTGTTAACATTGCTGAAATAATGGTGGATATGTCTCAGCTATCATCTGCCAATCTTAATGTGAATCACCGTGACTGTAAAAGGATGAAACTTTGCAGCAATGTTGATGATGATGATGTGAAGATCAATGAACAAGGTGGTAAAAACAATGAAAAGAACAGGTTGGTGGTGAGATTAAAGATTCCAAAAGGACTTATTACTCAAACATCTCAAGCTAGCAAGCAACCTGCCTCCAATGATAACAATGTAGAGAACAATACCGATGAAGGTGATGAAACGGATGGGGAATCAACTCTTGAATTAGAGTCACACATTTTTCGGGATTTTGATTTGAATGAGCTACTGGAAGATGATGTTGTAGATGAAACCACCATTTAG

Protein sequence

>MsaT002455.1

MMKNSFSSSSPSSHNSIHHKQKSNVVDHENEKHQQGARLHKCDLCAREFTTGNALGGHKQFHSTNNFLKGKINKHKHANGIKIGTSHSCVLCSKAFSSKKALNGHMKWHSQNDSKKGSNNYDLDQFPSIDLTKYLPPIRYETKKRSWDYILDVETVNIAEIMVDMSQLSSANLNVNHRDCKRMKLCSNVDDDDVKINEQGGKNNEKNRLVVRLKIPKGLITQTSQASKQPASNDNNVENNTDEGDETDGESTLELESHIFRDFDLNELLEDDVVDETTI*