AlfalfaGEDB | MsaG002459

M. sativa ssp. caerulea / MsaG002459

KEGG: -
GO: -
PFAM: PF02365.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002459	KEH41673.1	87.097	248	22	2	1	248	1	238	2.99e-149	429

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002459	tr\|A0A072VJQ5\|A0A072VJQ5_MEDTR	87.097	248	22	2	1	248	1	238	1.43e-149	429

TFs/TRs:

Gene ID	Type	Classification
MsaG002459	TF	NAC

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000362	MsaG002459	0.824285	1.552754e-53	3.830419e-51
MsaG000802	MsaG002459	0.810750	1.689991e-50	2.939237e-48
MsaG003331	MsaG002459	0.802885	7.630105e-49	1.101469e-46
MsaG004475	MsaG002459	0.840313	1.733447e-57	6.833929e-55
MsaG005811	MsaG002459	0.800534	2.304422e-48	3.153546e-46
MsaG006601	MsaG002459	0.802587	8.783647e-49	1.259399e-46
MsaG006618	MsaG002459	0.833463	9.535003e-56	3.051270e-53
MsaG006868	MsaG002459	0.818341	3.596833e-52	7.573565e-50
MsaG007864	MsaG002459	0.823929	1.879677e-53	4.592251e-51
MsaG008142	MsaG002459	0.838224	6.000626e-57	2.216074e-54
MsaG009346	MsaG002459	0.824960	1.078161e-53	2.709196e-51
MsaG011441	MsaG002459	0.842592	4.380758e-58	1.856669e-55
MsaG011470	MsaG002459	0.809085	3.841056e-50	6.416274e-48
MsaG012426	MsaG002459	0.805247	2.475001e-49	3.773784e-47
MsaG043560	MsaG002459	0.825973	6.221923e-54	1.607887e-51
MsaG045706	MsaG002459	0.801910	1.208845e-48	1.706605e-46
MsaG046539	MsaG002459	0.813049	5.363710e-51	9.873123e-49
MsaG046873	MsaG002459	0.802307	1.002421e-48	1.428087e-46
MsaG047138	MsaG002459	0.816317	1.021370e-51	2.041504e-49
MsaG002459	MsaG020999	0.823724	2.099206e-53	5.100270e-51
MsaG002459	MsaG031590	0.809179	3.669163e-50	6.142790e-48
MsaG002459	MsaG038131	0.841693	7.558028e-58	3.112240e-55
MsaG015385	MsaG002459	0.847114	2.676085e-59	1.315440e-56
MsaG017298	MsaG002459	0.805190	2.542662e-49	3.871974e-47
MsaG018044	MsaG002459	0.801548	1.432877e-48	2.006286e-46
MsaG018496	MsaG002459	0.803784	4.979069e-49	7.338605e-47
MsaG019108	MsaG002459	0.818360	3.561238e-52	7.502355e-50
MsaG023958	MsaG002459	0.808820	4.375681e-50	7.262750e-48
MsaG025735	MsaG002459	0.815802	1.329259e-51	2.622297e-49
MsaG029619	MsaG002459	0.864037	3.229604e-64	2.936312e-61
MsaG029653	MsaG002459	0.810013	2.433406e-50	4.156835e-48
MsaG029936	MsaG002459	0.810933	1.543609e-50	2.696658e-48
MsaG032124	MsaG002459	0.811711	1.048308e-50	1.866629e-48
MsaG032487	MsaG002459	0.824747	1.209952e-53	3.022621e-51
MsaG035059	MsaG002459	0.817564	5.377314e-52	1.109823e-49
MsaG040262	MsaG002459	0.801923	1.201079e-48	1.696168e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002459	MtrunA17_Chr1g0174911	87.097	248	22	2	1	248	1	238	2.75e-153	429
MsaG002459	MtrunA17_Chr1g0168571	60.784	255	72	8	1	245	1	237	1.17e-88	265
MsaG002459	MtrunA17_Chr7g0274971	59.615	208	51	6	1	183	1	200	1.48e-76	231
MsaG002459	MtrunA17_Chr7g0214071	32.143	168	91	9	11	170	19	171	1.48e-11	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 44 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAAAGAATCCTTGGGATATT+TGG	0.040443	1:-41635315	MsaT002459.1:CDS
CCACCATTTGATTCGTTTCT+TGG	0.076491	1:+41634591	None:intergenic
TACAAATTTGTTGGCTTCTT+CGG	0.206819	1:+41634470	None:intergenic
AAATATCCCAAGGATTCTTT+AGG	0.262491	1:+41635317	None:intergenic
TCAAGAATGGCGATATAATT+TGG	0.272332	1:+41635358	None:intergenic
ACAAATTTGTTGGCTTCTTC+GGG	0.289766	1:+41634471	None:intergenic
AGTGGTAGATTTCTTCTCTA+AGG	0.296212	1:+41635231	None:intergenic
TCAAAAGTAGTTCGTTCTAT+TGG	0.321604	1:-41635205	MsaT002459.1:CDS
AAAGAATCCTTGGGATATTT+GGG	0.338135	1:-41635314	MsaT002459.1:CDS
TGGGATATTTGGGAAGAGTT+TGG	0.341365	1:-41635304	MsaT002459.1:CDS
AATTTGGCAGAGATTTGTTA+TGG	0.353680	1:+41635374	None:intergenic
TAATACAAAGTCTCATTATA+AGG	0.356324	1:-41634547	MsaT002459.1:CDS
GTAGTTCGTTCTATTGGAAT+TGG	0.365191	1:-41635199	MsaT002459.1:CDS
ATCTTTGATAAGAAATCCTT+TGG	0.365896	1:-41635029	MsaT002459.1:intron
TCTCAATTCTTCTTCAAGTA+AGG	0.366602	1:-41635452	MsaT002459.1:CDS
AATATCCCAAGGATTCTTTA+GGG	0.371252	1:+41635318	None:intergenic
CTAAGAATGGTTGTCTCTCT+TGG	0.381735	1:+41634495	None:intergenic
ATTCTTGAATACGATTTGTT+TGG	0.392427	1:-41635343	MsaT002459.1:CDS
TGGACACAATAGCACAAATA+TGG	0.393645	1:-41634571	MsaT002459.1:CDS
TGTAGGACTTACAAATTTGT+TGG	0.396611	1:+41634461	None:intergenic
TTAAGGTAGTGAAGAAATAT+AGG	0.411633	1:+41635254	None:intergenic
GGCTTCTTCGGGTCTAAGAA+TGG	0.413104	1:+41634482	None:intergenic
GAAAGAAAGACCATTGTTCC+TGG	0.417974	1:-41634868	MsaT002459.1:CDS
TTGGTACCCTAAAGAATCCT+TGG	0.424102	1:-41635324	MsaT002459.1:CDS
AATCAAGTAACTTACAGATA+TGG	0.426262	1:+41634831	None:intergenic
AGATTTCTTCTCTAAGGTTA+AGG	0.432842	1:+41635237	None:intergenic
TGGTACCCTAAAGAATCCTT+GGG	0.489046	1:-41635323	MsaT002459.1:CDS
GAACCAAGAAACGAATCAAA+TGG	0.503929	1:-41634594	MsaT002459.1:CDS
GTTCTATTGGAATTGGTGCA+TGG	0.508402	1:-41635192	MsaT002459.1:CDS
AAACAAATCGTATTCAAGAA+TGG	0.511320	1:+41635345	None:intergenic
TATTATACAACAACAAATGT+AGG	0.527932	1:+41634444	None:intergenic
TTCTTATCAAAGATTTGTCA+AGG	0.536486	1:+41635038	None:intergenic
ATGGTGGTTTCTGCACGTCC+AGG	0.545124	1:+41634850	None:intergenic
TTCTATTGGAATTGGTGCAT+GGG	0.546914	1:-41635191	MsaT002459.1:CDS
GCAAGATCCATGCACCATCA+TGG	0.566204	1:+41635071	None:intergenic
AACTCTTCCCAAATATCCCA+AGG	0.585203	1:+41635307	None:intergenic
CAAGTAACTTACAGATATGG+TGG	0.592493	1:+41634834	None:intergenic
TTCTGCACGTCCAGGAACAA+TGG	0.595867	1:+41634858	None:intergenic
ATTGGAATTGGTGCATGGGA+AGG	0.630255	1:-41635187	MsaT002459.1:CDS
GCACTTACCATGATGGTGCA+TGG	0.633065	1:-41635078	MsaT002459.1:CDS
AATAGTGGCACTTACCATGA+TGG	0.645072	1:-41635085	MsaT002459.1:CDS
AGAAAGAATATTGATGCACA+AGG	0.650579	1:-41634895	MsaT002459.1:CDS
TGGGAAGGTGAAGAAGACAC+TGG	0.669846	1:-41635172	MsaT002459.1:CDS
CCAAGAAACGAATCAAATGG+TGG	0.672770	1:-41634591	MsaT002459.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	41634446	41635479	41634446	ID=MsaG002459
Chr1	mRNA	41634446	41635479	41634446	ID=MsaT002459.1;Parent=MsaG002459
Chr1	exon	41634446	41634661	41634446	ID=MsaT002459.1.exon3;Parent=MsaT002459.1
Chr1	CDS	41634446	41634661	41634446	ID=cds.MsaT002459.1;Parent=MsaT002459.1
Chr1	exon	41634846	41634944	41634846	ID=MsaT002459.1.exon2;Parent=MsaT002459.1
Chr1	CDS	41634846	41634944	41634846	ID=cds.MsaT002459.1;Parent=MsaT002459.1
Chr1	exon	41635030	41635479	41635030	ID=MsaT002459.1.exon1;Parent=MsaT002459.1
Chr1	CDS	41635030	41635479	41635030	ID=cds.MsaT002459.1;Parent=MsaT002459.1

Gene Sequence

>MsaT002459.1

ATGGCTCTCAATTCTTCTTCAAGTAAGGATTTCAAATTCACACTCAGAGATGATGAACTTCTACGTTTCCTCTACAACAAAATCCATAACAAATCTCTGCCAAATTATATCGCCATTCTTGAATACGATTTGTTTGGTACCCTAAAGAATCCTTGGGATATTTGGGAAGAGTTTGGAGCTTCTCGCTCATATTGTGAAAAAGACCTATATTTCTTCACTACCTTAACCTTAGAGAAGAAATCTACCACTAGCTCAAAAGTAGTTCGTTCTATTGGAATTGGTGCATGGGAAGGTGAAGAAGACACTGGAAAAATTATAGTTGCAAAAAACAAGAACCAACTCCTTGGTGTGAAAAAGTGTTTTCGATTTGAGAATAGTGGCACTTACCATGATGGTGCATGGATCTTGCATGAATATAGCCTTGACAAATCTTTGATAAGAAATCCTTTGGCCAAAAATTATGTTCTATGCAGATTTAGAAAGAATATTGATGCACAAGGTCAAGAAAGAAAGACCATTGTTCCTGGACGTGCAGAAACCACCATATCTGGAAATAAAGATAAAGATTCGTTAACGAAATATATAATTTATAAAGAACCAAGAAACGAATCAAATGGTGGACACAATAGCACAAATATGGTTAATACAAAGTCTCATTATAAGGAAGATGAAAAAGTTGTGAGAAATATTTGGCCAAGAGAGACAACCATTCTTAGACCCGAAGAAGCCAACAAATTTGTAAGTCCTACATTTGTTGTTGTATAA

Protein sequence

>MsaT002459.1

MALNSSSSKDFKFTLRDDELLRFLYNKIHNKSLPNYIAILEYDLFGTLKNPWDIWEEFGASRSYCEKDLYFFTTLTLEKKSTTSSKVVRSIGIGAWEGEEDTGKIIVAKNKNQLLGVKKCFRFENSGTYHDGAWILHEYSLDKSLIRNPLAKNYVLCRFRKNIDAQGQERKTIVPGRAETTISGNKDKDSLTKYIIYKEPRNESNGGHNSTNMVNTKSHYKEDEKVVRNIWPRETTILRPEEANKFVSPTFVVV*