AlfalfaGEDB | MsaG002467

M. sativa ssp. caerulea / MsaG002467

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002467	XP_013467654.1	91.304	161	14	0	3	163	160	320	6.98e-98	295

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002467	sp\|Q10LZ1\|PHR1_ORYSJ	47.482	139	72	1	16	154	212	349	1.23e-33	125

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002467	tr\|A0A072VJ98\|A0A072VJ98_MEDTR	91.304	161	14	0	3	163	160	320	3.33e-98	295

TFs/TRs:

Gene ID	Type	Classification
MsaG002467	TF	GARP-G2-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003929	MsaG002467	0.846357	4.301759e-59	2.061704e-56
MsaG006625	MsaG002467	0.800365	2.493172e-48	3.398849e-46
MsaG009009	MsaG002467	0.811412	1.216610e-50	2.150506e-48
MsaG011947	MsaG002467	0.801261	1.639855e-48	2.281146e-46
MsaG011971	MsaG002467	0.804564	3.431421e-49	5.149933e-47
MsaG045281	MsaG002467	0.817791	4.781036e-52	9.925460e-50
MsaG046946	MsaG002467	0.859973	5.606142e-63	4.354166e-60
MsaG002467	MsaG008311	0.817964	4.372822e-52	9.118603e-50
MsaG002467	MsaG037987	0.812681	6.451699e-51	1.176717e-48
MsaG017441	MsaG002467	0.809007	3.990777e-50	6.653947e-48
MsaG018202	MsaG002467	0.801463	1.491653e-48	2.084545e-46
MsaG020104	MsaG002467	0.800370	2.487234e-48	3.391137e-46
MsaG022079	MsaG002467	0.801143	1.732756e-48	2.404006e-46
MsaG025428	MsaG002467	0.838579	4.864572e-57	1.816499e-54
MsaG028246	MsaG002467	0.813255	4.836699e-51	8.948736e-49
MsaG035018	MsaG002467	0.819138	2.375791e-52	5.107920e-50
MsaG039196	MsaG002467	0.810382	2.027677e-50	3.495173e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002467	MtrunA17_Chr1g0175071	91.304	161	14	0	3	163	160	320	6.42e-102	295
MsaG002467	MtrunA17_Chr7g0258531	60.432	139	50	2	20	156	213	348	1.45e-44	150
MsaG002467	MtrunA17_Chr1g0175091	52.593	135	63	1	16	150	254	387	1.75e-35	127
MsaG002467	MtrunA17_Chr7g0258551	50.758	132	65	0	19	150	211	342	3.72e-34	123
MsaG002467	MtrunA17_Chr1g0190301	45.139	144	78	1	8	150	163	306	7.54e-34	122
MsaG002467	MtrunA17_Chr7g0261911	47.445	137	69	2	16	150	258	393	1.93e-32	120
MsaG002467	MtrunA17_Chr2g0291021	47.445	137	63	2	20	150	49	182	1.39e-31	115
MsaG002467	MtrunA17_Chr7g0274471	43.939	132	73	1	20	150	218	349	8.54e-28	107
MsaG002467	MtrunA17_Chr7g0254981	38.889	144	76	2	15	150	45	184	3.28e-27	103
MsaG002467	MtrunA17_Chr2g0321461	41.509	159	72	6	9	146	34	192	4.86e-25	99.0
MsaG002467	MtrunA17_Chr8g0356501	37.975	158	86	2	9	158	26	179	1.20e-24	97.4
MsaG002467	MtrunA17_Chr2g0310011	40.141	142	73	2	9	142	24	161	1.53e-24	97.1
MsaG002467	MtrunA17_Chr6g0461641	38.217	157	72	3	15	150	37	189	1.54e-24	97.8
MsaG002467	MtrunA17_Chr5g0417521	39.041	146	76	3	13	145	8	153	9.32e-23	92.4
MsaG002467	MtrunA17_Chr4g0042451	37.931	145	74	3	15	145	12	154	2.25e-22	91.3
MsaG002467	MtrunA17_Chr5g0409731	36.943	157	80	4	20	160	25	178	4.61e-22	89.7
MsaG002467	MtrunA17_Chr7g0242521	42.308	130	70	3	16	141	9	137	1.02e-19	82.4
MsaG002467	MtrunA17_Chr2g0290991	34.266	143	81	3	15	144	34	176	2.32e-18	80.1
MsaG002467	MtrunA17_Chr1g0197171	34.351	131	84	2	9	138	33	162	1.78e-17	77.4
MsaG002467	MtrunA17_Chr1g0162931	62.264	53	20	0	22	74	20	72	7.12e-16	72.8
MsaG002467	MtrunA17_Chr1g0175081	55.172	58	26	0	16	73	18	75	2.35e-15	67.8
MsaG002467	MtrunA17_Chr8g0379121	51.429	70	26	1	22	91	113	174	2.70e-15	72.0
MsaG002467	MtrunA17_Chr1g0210911	41.304	92	40	2	22	101	24	113	3.20e-15	71.6
MsaG002467	MtrunA17_Chr2g0320231	51.429	70	26	1	22	91	99	160	1.48e-14	70.1
MsaG002467	MtrunA17_Chr3g0095611	60.377	53	21	0	22	74	21	73	1.81e-14	68.2
MsaG002467	MtrunA17_Chr7g0243081	56.604	53	23	0	22	74	73	125	9.85e-14	67.4
MsaG002467	MtrunA17_Chr6g0479431	47.059	68	34	1	22	89	204	269	1.70e-13	67.0
MsaG002467	MtrunA17_Chr1g0154261	49.206	63	32	0	22	84	128	190	1.97e-13	66.2
MsaG002467	MtrunA17_Chr3g0109981	38.532	109	51	3	22	130	276	368	2.85e-13	66.2
MsaG002467	MtrunA17_Chr2g0288601	57.143	49	21	0	22	70	73	121	4.37e-13	62.8
MsaG002467	MtrunA17_Chr8g0366281	54.717	53	24	0	22	74	175	227	4.80e-13	65.5
MsaG002467	MtrunA17_Chr2g0283951	50.000	74	25	2	22	91	91	156	7.07e-13	65.1
MsaG002467	MtrunA17_Chr5g0410741	52.830	53	25	0	22	74	221	273	1.32e-12	64.3
MsaG002467	MtrunA17_Chr7g0275401	50.877	57	27	1	20	76	192	247	3.09e-12	62.8
MsaG002467	MtrunA17_Chr4g0009901	53.704	54	24	1	20	73	168	220	1.42e-11	60.8
MsaG002467	MtrunA17_Chr2g0324891	48.529	68	32	2	9	74	148	214	4.73e-11	60.1
MsaG002467	MtrunA17_Chr1g0198601	52.459	61	27	1	18	78	209	267	5.51e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002467	AT5G06800.2	48.905	137	65	1	19	150	191	327	2.84e-34	124
MsaG002467	AT5G06800.1	50.000	132	66	0	19	150	191	322	3.12e-34	124
MsaG002467	AT2G01060.1	46.259	147	69	2	10	150	5	147	3.05e-31	114
MsaG002467	AT4G28610.1	45.775	142	72	2	9	148	217	355	1.06e-30	115
MsaG002467	AT5G29000.1	43.478	138	74	2	17	150	185	322	3.20e-29	110
MsaG002467	AT5G29000.3	43.478	138	74	2	17	150	185	322	3.20e-29	110
MsaG002467	AT5G29000.2	43.478	138	74	2	17	150	228	365	4.72e-29	110
MsaG002467	AT3G04450.4	39.735	151	85	2	4	150	184	332	3.60e-28	108
MsaG002467	AT3G04450.2	39.735	151	85	2	4	150	184	332	3.60e-28	108
MsaG002467	AT3G04450.1	41.007	139	78	1	16	150	234	372	5.78e-28	107
MsaG002467	AT4G13640.1	38.312	154	78	3	20	158	37	188	9.45e-25	97.1
MsaG002467	AT5G18240.1	36.585	164	85	3	2	146	24	187	1.91e-24	97.8
MsaG002467	AT5G18240.4	36.585	164	85	3	2	146	24	187	1.91e-24	97.8
MsaG002467	AT1G79430.2	38.217	157	85	2	9	157	23	175	5.02e-24	96.3
MsaG002467	AT3G13040.3	41.096	146	70	2	16	150	237	377	8.49e-24	96.7
MsaG002467	AT3G13040.1	41.096	146	70	2	16	150	237	377	8.49e-24	96.7
MsaG002467	AT3G13040.2	41.096	146	70	2	16	150	237	377	8.49e-24	96.7
MsaG002467	AT3G04030.3	37.805	164	83	3	2	146	24	187	8.66e-24	96.3
MsaG002467	AT3G24120.1	39.474	152	79	2	20	158	41	192	9.01e-24	94.7
MsaG002467	AT2G20400.2	41.667	132	75	1	20	149	231	362	4.39e-23	94.4
MsaG002467	AT2G20400.1	42.424	132	73	2	20	149	231	361	1.06e-22	93.2
MsaG002467	AT4G13640.2	37.580	157	78	4	20	158	37	191	1.11e-22	91.7
MsaG002467	AT5G18240.5	35.119	168	88	4	2	150	24	189	7.25e-22	90.9
MsaG002467	AT3G24120.2	38.710	155	79	3	20	158	41	195	1.06e-21	89.4
MsaG002467	AT1G69580.1	37.584	149	75	2	15	145	29	177	6.88e-21	87.4
MsaG002467	AT3G04030.2	36.585	164	84	4	2	146	24	186	8.15e-21	87.8
MsaG002467	AT1G69580.2	35.714	154	72	2	15	145	29	178	2.34e-20	86.3
MsaG002467	AT3G12730.1	34.211	152	91	2	5	147	8	159	2.85e-20	84.3
MsaG002467	AT5G18240.2	32.738	168	88	4	2	150	24	185	1.10e-19	84.7
MsaG002467	AT5G18240.3	32.738	168	88	4	2	150	24	185	1.10e-19	84.7
MsaG002467	AT3G04030.1	34.756	164	82	4	2	146	24	181	4.61e-19	83.2
MsaG002467	AT5G45580.1	32.680	153	78	3	20	150	7	156	7.94e-19	80.9
MsaG002467	AT5G45580.2	32.680	153	78	3	20	150	23	172	1.08e-18	80.9
MsaG002467	AT5G29000.4	59.322	59	24	0	17	75	228	286	3.89e-18	79.7
MsaG002467	AT3G04450.3	55.000	60	27	0	16	75	234	293	2.03e-17	77.8
MsaG002467	AT5G06800.3	64.815	54	19	0	20	73	192	245	2.44e-17	77.0
MsaG002467	AT2G42660.1	58.491	53	22	0	22	74	52	104	1.26e-15	72.4
MsaG002467	AT2G40260.1	60.377	53	21	0	22	74	84	136	3.17e-15	72.4
MsaG002467	AT4G04605.1	60.377	53	21	0	22	74	16	68	3.19e-15	70.5
MsaG002467	AT4G04580.1	58.491	53	22	0	22	74	16	68	5.20e-15	68.9
MsaG002467	AT5G42630.2	47.887	71	32	2	22	91	107	173	8.82e-15	69.3
MsaG002467	AT1G14600.1	61.111	54	21	0	22	75	25	78	1.12e-14	69.7
MsaG002467	AT5G16560.1	41.111	90	53	0	22	111	221	310	1.23e-14	70.5
MsaG002467	AT5G42630.1	47.887	71	32	2	22	91	107	173	1.45e-14	69.7
MsaG002467	AT1G32240.2	36.190	105	61	2	22	120	215	319	9.73e-14	67.8
MsaG002467	AT1G32240.1	36.190	105	61	2	22	120	215	319	1.05e-13	67.8
MsaG002467	AT2G38300.1	47.945	73	30	1	22	94	56	120	1.52e-13	67.4
MsaG002467	AT2G01060.2	45.098	102	46	2	55	150	1	98	1.57e-13	66.2
MsaG002467	AT2G02060.2	59.615	52	21	0	22	73	31	82	1.58e-13	66.6
MsaG002467	AT2G02060.1	59.615	52	21	0	22	73	31	82	1.58e-13	66.6
MsaG002467	AT2G06020.1	50.000	54	27	0	20	73	86	139	1.66e-13	67.0
MsaG002467	AT4G37180.1	43.333	90	45	2	5	89	196	284	4.24e-13	66.2
MsaG002467	AT4G17695.1	42.857	91	45	3	22	112	166	249	4.98e-13	65.9
MsaG002467	AT4G37180.2	43.333	90	45	2	5	89	203	291	5.74e-13	65.9
MsaG002467	AT4G04555.1	58.824	51	21	0	24	74	18	68	6.43e-13	62.0
MsaG002467	AT2G25180.1	46.667	75	36	2	17	91	192	262	9.94e-11	59.7

Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGATTCTTCTATTTGCATT+TGG	0.336254	1:+41826175	None:intergenic
TCATGTCAAAAGTCATTTGC+AGG	0.353917	1:-41827275	MsaT002467.1:intron
ATTATATAAACTTACTTTCT+GGG	0.366001	1:+41827429	None:intergenic
ACAAAAGAAAAGAACCAAAC+AGG	0.442809	1:-41825906	MsaT002467.1:CDS
ATCATTTGTAGTATAGCCTT+AGG	0.450838	1:+41827322	None:intergenic
TAAGGCTATACTACAAATGA+TGG	0.452684	1:-41827320	MsaT002467.1:CDS
TACTTTCTGGGCCACCAAGC+TGG	0.476548	1:+41827441	None:intergenic
ATTATTATTGTCAACCAGCT+TGG	0.483051	1:-41827455	MsaT002467.1:CDS
GATGCAGCGAAATTTGCAAC+TGG	0.519384	1:-41825972	MsaT002467.1:CDS
ATTATTGTCAACCAGCTTGG+TGG	0.523219	1:-41827452	MsaT002467.1:CDS
CACACGCACAAATGTTTGAA+AGG	0.526179	1:-41826984	MsaT002467.1:intron
TTTCTGAAAGGAAATTTCAT+GGG	0.532722	1:+41828474	None:intergenic
AGGGTAAAAGAAGATTAAGA+TGG	0.538823	1:-41827502	MsaT002467.1:CDS
GAGGAAGGGCAGATAACAGA+TGG	0.546455	1:-41826359	MsaT002467.1:CDS
GAGCAATAAACGACAATTCG+AGG	0.546674	1:-41826127	MsaT002467.1:intron
TTAATCAGAGGCAAAGCCTA+AGG	0.566249	1:-41827338	MsaT002467.1:intron
AACTACAACTTGAGGTTGAG+AGG	0.574473	1:-41826149	MsaT002467.1:CDS
GTTTCAGGAATATCTGAGGA+AGG	0.584827	1:-41826374	MsaT002467.1:intron
AATTTCCTTTCAGAAAACTC+AGG	0.594791	1:-41828467	MsaT002467.1:intron
AAGGCTATACTACAAATGAT+GGG	0.610409	1:-41827319	MsaT002467.1:CDS
ATCACGACAACTACAACTTG+AGG	0.638258	1:-41826157	MsaT002467.1:CDS
TTTCAGGAATATCTGAGGAA+GGG	0.639128	1:-41826373	MsaT002467.1:intron
TCGTGTTTCAGGAATATCTG+AGG	0.640339	1:-41826378	MsaT002467.1:intron
TATACTACAAATGATGGGTG+TGG	0.647886	1:-41827314	MsaT002467.1:CDS
AGGAAGGGCAGATAACAGAT+GGG	0.654049	1:-41826358	MsaT002467.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	41825877	41828493	41825877	ID=MsaG002467
Chr1	mRNA	41825877	41828493	41825877	ID=MsaT002467.1;Parent=MsaG002467
Chr1	exon	41825877	41825993	41825877	ID=MsaT002467.1.exon7;Parent=MsaT002467.1
Chr1	CDS	41825877	41825993	41825877	ID=cds.MsaT002467.1;Parent=MsaT002467.1
Chr1	exon	41826128	41826197	41826128	ID=MsaT002467.1.exon6;Parent=MsaT002467.1
Chr1	CDS	41826128	41826197	41826128	ID=cds.MsaT002467.1;Parent=MsaT002467.1
Chr1	exon	41826335	41826389	41826335	ID=MsaT002467.1.exon5;Parent=MsaT002467.1
Chr1	CDS	41826335	41826389	41826335	ID=cds.MsaT002467.1;Parent=MsaT002467.1
Chr1	exon	41826985	41827024	41826985	ID=MsaT002467.1.exon4;Parent=MsaT002467.1
Chr1	CDS	41826985	41827024	41826985	ID=cds.MsaT002467.1;Parent=MsaT002467.1
Chr1	exon	41827276	41827352	41827276	ID=MsaT002467.1.exon3;Parent=MsaT002467.1
Chr1	CDS	41827276	41827352	41827276	ID=cds.MsaT002467.1;Parent=MsaT002467.1
Chr1	exon	41827444	41827550	41827444	ID=MsaT002467.1.exon2;Parent=MsaT002467.1
Chr1	CDS	41827444	41827550	41827444	ID=cds.MsaT002467.1;Parent=MsaT002467.1
Chr1	exon	41828468	41828493	41828468	ID=MsaT002467.1.exon1;Parent=MsaT002467.1
Chr1	CDS	41828468	41828493	41828468	ID=cds.MsaT002467.1;Parent=MsaT002467.1

Gene Sequence

>MsaT002467.1

ATGAAATTTCCTTTCAGAAAACTCAGCAACTCTGATTTTAAGATAAGTGCAAAGGGTAAAAGAAGATTAAGATGGACAAAAGAATTGAATGAGTCATTTATTATTATTGTCAACCAGCTTGGTGGCCCAGAAAAGGCAAAGCCTAAGGCTATACTACAAATGATGGGTGTGGATGTGTTGACCATTTCTCATGTCAAAAGTCATTTGCAGAAATATCGTTCTACATTACACACGCACAAATGTTTGAAAGGAATATCTGAGGAAGGGCAGATAACAGATGGGATTAATGAGCTTCAAGTTAAAATCCAAATGCAAATAGAAGAATCACGACAACTACAACTTGAGGTTGAGAGGAGCAATAAACGACAATTCGAGATGCAGCGAAATTTGCAACTGGTGATTGAACAGCAGAAGAAGCAGCTCAAGTTAATGTTAGATCAACAAAAGAAAAGAACCAAACAGGAGAAAATGACCGATTTAAGACGAAAATGA

Protein sequence

>MsaT002467.1

MKFPFRKLSNSDFKISAKGKRRLRWTKELNESFIIIVNQLGGPEKAKPKAILQMMGVDVLTISHVKSHLQKYRSTLHTHKCLKGISEEGQITDGINELQVKIQMQIEESRQLQLEVERSNKRQFEMQRNLQLVIEQQKKQLKLMLDQQKKRTKQEKMTDLRRK*