AlfalfaGEDB | MsaG002469

M. sativa ssp. caerulea / MsaG002469

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002469	XP_013467656.1	96.273	322	10	2	1	322	97	416	0.0	636

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002469	sp\|Q0WVU3\|PHL5_ARATH	81.679	131	23	1	164	293	192	322	1.20e-69	224

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002469	tr\|A0A072VJR9\|A0A072VJR9_MEDTR	96.273	322	10	2	1	322	97	416	0.0	636

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TFs/TRs:

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Gene ID	Type	Classification
MsaG002469	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000033	MsaG002469	0.819998	1.514969e-52	3.331868e-50
MsaG000519	MsaG002469	0.829610	8.393008e-55	2.402095e-52
MsaG000717	MsaG002469	0.852496	8.521961e-61	5.036901e-58
MsaG000788	MsaG002469	0.800048	2.890775e-48	3.912746e-46
MsaG001468	MsaG002469	0.800760	2.073245e-48	2.851742e-46
MsaG002469	MsaG003468	0.801999	1.159301e-48	1.639930e-46
MsaG002469	MsaG003513	0.804698	3.219771e-49	4.847137e-47
MsaG002469	MsaG004006	0.841778	7.177052e-58	2.963477e-55
MsaG002469	MsaG004047	0.841637	7.814522e-58	3.212231e-55
MsaG002469	MsaG004434	0.849588	5.580176e-60	2.982504e-57

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002469	MtrunA17_Chr1g0175091	96.273	322	10	2	1	322	97	416	0.0	636
MsaG002469	MtrunA17_Chr7g0258551	60.059	338	105	8	1	325	50	370	7.54e-119	347
MsaG002469	MtrunA17_Chr7g0261911	59.441	143	56	2	154	294	252	394	7.68e-56	188
MsaG002469	MtrunA17_Chr1g0190301	60.563	142	50	3	159	294	166	307	1.44e-51	175
MsaG002469	MtrunA17_Chr2g0291021	50.296	169	66	3	164	314	49	217	6.26e-50	169
MsaG002469	MtrunA17_Chr7g0274471	52.174	161	73	3	163	319	217	377	1.85e-48	168
MsaG002469	MtrunA17_Chr7g0254981	50.323	155	64	3	155	296	33	187	1.17e-47	161
MsaG002469	MtrunA17_Chr6g0461641	45.562	169	66	3	160	306	38	202	1.38e-39	143
MsaG002469	MtrunA17_Chr2g0321461	43.011	186	75	4	142	305	27	203	1.19e-38	140
MsaG002469	MtrunA17_Chr1g0175081	71.111	90	26	0	146	235	4	93	1.21e-38	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002469	AT5G06800.1	81.679	131	23	1	164	293	192	322	1.22e-70	224
MsaG002469	AT5G06800.2	78.676	136	23	2	164	293	192	327	3.54e-68	218
MsaG002469	AT4G28610.1	56.522	161	63	5	147	304	212	368	2.21e-52	178
MsaG002469	AT5G29000.1	45.833	216	91	6	95	297	124	326	2.42e-52	177
MsaG002469	AT5G29000.3	45.833	216	91	6	95	297	124	326	2.42e-52	177
MsaG002469	AT5G29000.2	45.833	216	91	6	95	297	167	369	5.40e-52	177
MsaG002469	AT2G01060.1	53.086	162	70	4	159	317	10	168	7.94e-51	170
MsaG002469	AT3G04450.4	46.078	204	92	6	116	314	157	347	1.08e-50	173
MsaG002469	AT3G04450.2	46.078	204	92	6	116	314	157	347	1.08e-50	173
MsaG002469	AT3G04450.1	46.078	204	92	6	116	314	197	387	2.29e-50	173

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Find 47 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACAGTTGCGAATAG+AGG	0.499177	1:-41839809	MsaT002469.1:CDS
AAAATTGAGATATCAAAAGA+GGG	0.579511	1:+41842578	None:intergenic
AAATCCAATAAAATCCAATG+TGG	0.616777	1:-41842415	MsaT002469.1:CDS
AAATTACCTTGAGCTTGTTC+TGG	0.349173	1:+41841530	None:intergenic
AATCCAATAAAATCCAATGT+GGG	0.615499	1:-41842414	MsaT002469.1:CDS
AATTAGTCCTAAAGATATTG+AGG	0.504863	1:-41839680	MsaT002469.1:intron
AATTTGACAACTCAAAATTG+TGG	0.568956	1:+41842473	None:intergenic
ACATTTCCTGTTGACATAGT+TGG	0.376397	1:+41842104	None:intergenic
ACCGATGATCCATTACAAGC+AGG	0.527035	1:+41842062	None:intergenic
ACTTACTCTCGGCACCGCCA+AGG	0.616888	1:+41841973	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	41839408	41842647	41839408	ID=MsaG002469
Chr1	mRNA	41839408	41842647	41839408	ID=MsaT002469.1;Parent=MsaG002469
Chr1	exon	41839408	41839425	41839408	ID=MsaT002469.1.exon7;Parent=MsaT002469.1
Chr1	CDS	41839408	41839425	41839408	ID=cds.MsaT002469.1;Parent=MsaT002469.1
Chr1	exon	41839681	41839839	41839681	ID=MsaT002469.1.exon6;Parent=MsaT002469.1
Chr1	CDS	41839681	41839839	41839681	ID=cds.MsaT002469.1;Parent=MsaT002469.1
Chr1	exon	41840596	41840665	41840596	ID=MsaT002469.1.exon5;Parent=MsaT002469.1
Chr1	CDS	41840596	41840665	41840596	ID=cds.MsaT002469.1;Parent=MsaT002469.1
Chr1	exon	41840776	41840827	41840776	ID=MsaT002469.1.exon4;Parent=MsaT002469.1
Chr1	CDS	41840776	41840827	41840776	ID=cds.MsaT002469.1;Parent=MsaT002469.1
Chr1	exon	41841537	41841653	41841537	ID=MsaT002469.1.exon3;Parent=MsaT002469.1
Chr1	CDS	41841537	41841653	41841537	ID=cds.MsaT002469.1;Parent=MsaT002469.1
Chr1	exon	41841979	41842195	41841979	ID=MsaT002469.1.exon2;Parent=MsaT002469.1
Chr1	CDS	41841979	41842195	41841979	ID=cds.MsaT002469.1;Parent=MsaT002469.1
Chr1	exon	41842300	41842647	41842300	ID=MsaT002469.1.exon1;Parent=MsaT002469.1
Chr1	CDS	41842300	41842647	41842300	ID=cds.MsaT002469.1;Parent=MsaT002469.1

Gene Sequence

>MsaT002469.1

ATGGGTTTTCCACAATATGATTACCAAGTTGGAAATGAAAGTAGTAACCCTCTTTTGATATCTCAATTTTCTTCTAATAAGGTTAATGATTTGGAATTCCCTTTGTATCAAAGGGAAAATCATTACCTTGATTCAACAACAAATCAATCTAGCCACAATTTTGAGTTGTCAAATTTAAACACTTTGCAACCAATTCTTAGATCTCCTGAAAAATCCAATAAAATCCAATGTGGGAATTTTCCTAGAGAAAATTTTCTCTCAGTTGAGCAACATAAATTCTTCATTGATGATGCTGCATCAGTTAGTATGAGTCCATTAATTCATTCTAATGGAAATCAAGATCATAAAGTTTCTTGTGGTTCATATGATTTTCCAGGTTCACAGCTGAATTTCTCTTATCAGCAAGATAAACTGTCTCCAACTATGTCAACAGGAAATGTCTCAACGAATTCCGGAAACCCTGCTTGTAATGGATCATCGGTTTCAAGTAAAACACGAATAAGATGGACTCAAGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGCGGTGCCGAGAAGGCAACACCGAAAGCGATATTAAGGCTGATGGATTCAGATGGATTGACAATTTTCCATGTTAAAAGTCATTTGCAGAAGTATAGAATTGCAAAATATATGCCAGAACAAGCTCAAGGGAAACCCGAGAAAAGAACTCATGTAGAGAATGTGAATCTTGATGCCAAATCTGGCTTGCAAATTAGAGAGGCACTTCAGCTGCAGCTAGACGTTCAGAGGCGTCTTCATGAACAACTAGAGATTCAGCGAAAATTACAGTTGCGAATAGAGGAACAAGGAAAGCAGTTGAAGATGATGTTTGACCAACAACAGAAGACAAGTAGTAATGGCCAATTGAACACTCAAAATTTGGACAATACAACAAACAATGATATACCAATTAGTCCTAAAGATATTGAGGTTCCATCATCCATGTAA

Protein sequence

>MsaT002469.1

MGFPQYDYQVGNESSNPLLISQFSSNKVNDLEFPLYQRENHYLDSTTNQSSHNFELSNLNTLQPILRSPEKSNKIQCGNFPRENFLSVEQHKFFIDDAASVSMSPLIHSNGNQDHKVSCGSYDFPGSQLNFSYQQDKLSPTMSTGNVSTNSGNPACNGSSVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRIAKYMPEQAQGKPEKRTHVENVNLDAKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSSNGQLNTQNLDNTTNNDIPISPKDIEVPSSM*