AlfalfaGEDB | MsaG002469

M. sativa ssp. caerulea / MsaG002469

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002469	XP_013467656.1	96.273	322	10	2	1	322	97	416	0.0	636

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002469	sp\|Q0WVU3\|PHL5_ARATH	81.679	131	23	1	164	293	192	322	1.20e-69	224

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002469	tr\|A0A072VJR9\|A0A072VJR9_MEDTR	96.273	322	10	2	1	322	97	416	0.0	636

TFs/TRs:

Gene ID	Type	Classification
MsaG002469	TF	GARP-G2-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000033	MsaG002469	0.819998	1.514969e-52	3.331868e-50
MsaG000519	MsaG002469	0.829610	8.393008e-55	2.402095e-52
MsaG000717	MsaG002469	0.852496	8.521961e-61	5.036901e-58
MsaG000788	MsaG002469	0.800048	2.890775e-48	3.912746e-46
MsaG001468	MsaG002469	0.800760	2.073245e-48	2.851742e-46
MsaG002469	MsaG003468	0.801999	1.159301e-48	1.639930e-46
MsaG002469	MsaG003513	0.804698	3.219771e-49	4.847137e-47
MsaG002469	MsaG004006	0.841778	7.177052e-58	2.963477e-55
MsaG002469	MsaG004047	0.841637	7.814522e-58	3.212231e-55
MsaG002469	MsaG004434	0.849588	5.580176e-60	2.982504e-57
MsaG002469	MsaG004556	0.815476	1.570445e-51	3.072518e-49
MsaG002469	MsaG004717	0.847295	2.388913e-59	1.181465e-56
MsaG002469	MsaG004888	0.813153	5.092147e-51	9.397320e-49
MsaG002469	MsaG005421	0.804000	4.491800e-49	6.653821e-47
MsaG002469	MsaG005423	0.823675	2.155240e-53	5.229539e-51
MsaG002469	MsaG005526	0.804172	4.137592e-49	6.153686e-47
MsaG002469	MsaG006030	0.804023	4.444156e-49	6.586795e-47
MsaG002469	MsaG006248	0.802342	9.861807e-49	1.406092e-46
MsaG002469	MsaG006262	0.808279	5.701794e-50	9.341372e-48
MsaG002469	MsaG006456	0.805916	1.794173e-49	2.778771e-47
MsaG002469	MsaG006468	0.841307	9.540887e-58	3.880983e-55
MsaG002469	MsaG006500	0.871657	1.182526e-66	1.470258e-63
MsaG002469	MsaG006777	0.806846	1.144622e-49	1.812129e-47
MsaG002469	MsaG007195	0.820860	9.627406e-53	2.166091e-50
MsaG002469	MsaG007237	0.803772	5.006860e-49	7.377622e-47
MsaG002469	MsaG007322	0.852408	9.023547e-61	5.317744e-58
MsaG002469	MsaG007570	0.806095	1.645429e-49	2.559275e-47
MsaG002469	MsaG007614	0.820240	1.334530e-52	2.953989e-50
MsaG002469	MsaG008017	0.821150	8.263642e-53	1.873694e-50
MsaG002469	MsaG008103	0.810219	2.197371e-50	3.772525e-48
MsaG002469	MsaG008198	0.813436	4.415967e-51	8.207633e-49
MsaG002469	MsaG008619	0.802346	9.841428e-49	1.403325e-46
MsaG002469	MsaG010394	0.819774	1.703352e-52	3.723786e-50
MsaG002469	MsaG010599	0.832630	1.533667e-55	4.789128e-53
MsaG002469	MsaG011584	0.839499	2.818173e-57	1.082962e-54
MsaG002469	MsaG012549	0.850901	2.400066e-60	1.341898e-57
MsaG002469	MsaG013537	0.832651	1.515179e-55	4.734362e-53
MsaG002469	MsaG013658	0.800122	2.793092e-48	3.786742e-46
MsaG002469	MsaG014855	0.851929	1.233220e-60	7.146287e-58
MsaG002469	MsaG014881	0.801641	1.371953e-48	1.925063e-46
MsaG002469	MsaG016427	0.807180	9.732755e-50	1.553097e-47
MsaG002469	MsaG017068	0.837557	8.891579e-57	3.217115e-54
MsaG002469	MsaG017081	0.817675	5.076843e-52	1.050792e-49
MsaG002469	MsaG017189	0.809004	3.996946e-50	6.663773e-48
MsaG002469	MsaG017702	0.844394	1.453946e-58	6.530566e-56
MsaG002469	MsaG017787	0.849410	6.252303e-60	3.321487e-57
MsaG002469	MsaG018085	0.874260	1.601988e-67	2.230326e-64
MsaG002469	MsaG018169	0.817891	4.540278e-52	9.449967e-50
MsaG002469	MsaG018447	0.800979	1.871795e-48	2.587266e-46
MsaG002469	MsaG018452	0.812368	7.550021e-51	1.366357e-48
MsaG002469	MsaG018638	0.820506	1.160355e-52	2.586441e-50
MsaG002469	MsaG018754	0.816077	1.155210e-51	2.294881e-49
MsaG002469	MsaG019193	0.826873	3.806959e-54	1.008725e-51
MsaG002469	MsaG019223	0.830154	6.194887e-55	1.800746e-52
MsaG002469	MsaG019285	0.834439	5.448793e-56	1.794849e-53
MsaG002469	MsaG019577	0.801570	1.418085e-48	1.986583e-46
MsaG002469	MsaG019924	0.800513	2.326747e-48	3.182557e-46
MsaG002469	MsaG020233	0.839693	2.510746e-57	9.707632e-55
MsaG002469	MsaG020450	0.824494	1.386911e-53	3.440974e-51
MsaG002469	MsaG020733	0.810802	1.647030e-50	2.868220e-48
MsaG002469	MsaG020812	0.860837	3.080435e-63	2.472607e-60
MsaG002469	MsaG020951	0.828989	1.185743e-54	3.333734e-52
MsaG002469	MsaG021668	0.839052	3.675839e-57	1.393108e-54
MsaG002469	MsaG021629	0.807322	9.084405e-50	1.454516e-47
MsaG002469	MsaG021737	0.809919	2.548342e-50	4.343356e-48
MsaG002469	MsaG023642	0.810062	2.374698e-50	4.061439e-48
MsaG002469	MsaG024119	0.833639	8.621543e-56	2.773273e-53
MsaG002469	MsaG025067	0.803723	5.126307e-49	7.545111e-47
MsaG002469	MsaG027483	0.812815	6.034786e-51	1.104336e-48
MsaG002469	MsaG027828	0.804735	3.162390e-49	4.764994e-47
MsaG002469	MsaG027807	0.812261	7.962674e-51	1.437193e-48
MsaG002469	MsaG027984	0.834585	5.010570e-56	1.657671e-53
MsaG002469	MsaG028026	0.816571	8.966752e-52	1.803924e-49
MsaG002469	MsaG028028	0.837669	8.321184e-57	3.021013e-54
MsaG002469	MsaG028191	0.834402	5.564107e-56	1.830853e-53
MsaG002469	MsaG028211	0.809257	3.529942e-50	5.920792e-48
MsaG002469	MsaG028234	0.841876	6.763251e-58	2.801562e-55
MsaG002469	MsaG028335	0.836604	1.553205e-56	5.459183e-54
MsaG002469	MsaG029188	0.800681	2.151422e-48	2.954047e-46
MsaG002469	MsaG029204	0.834832	4.344813e-56	1.448082e-53
MsaG002469	MsaG029388	0.831061	3.724389e-55	1.111116e-52
MsaG002469	MsaG030198	0.839856	2.277972e-57	8.852916e-55
MsaG002469	MsaG030649	0.845389	7.857388e-59	3.646985e-56
MsaG002469	MsaG031043	0.819484	1.982948e-52	4.302141e-50
MsaG002469	MsaG031129	0.884149	5.265832e-71	1.157310e-67
MsaG002469	MsaG032115	0.847013	2.852710e-59	1.397527e-56
MsaG002469	MsaG032512	0.806899	1.115836e-49	1.768763e-47
MsaG002469	MsaG032848	0.822408	4.241245e-53	9.944045e-51
MsaG002469	MsaG033051	0.804921	2.892521e-49	4.377254e-47
MsaG002469	MsaG033693	0.801364	1.562127e-48	2.178183e-46
MsaG002469	MsaG033746	0.827475	2.736730e-54	7.374265e-52
MsaG002469	MsaG034337	0.804657	3.283407e-49	4.938261e-47
MsaG002469	MsaG034836	0.850424	3.264661e-60	1.795258e-57
MsaG002469	MsaG035511	0.832941	1.284662e-55	4.048318e-53
MsaG002469	MsaG035669	0.802791	7.973570e-49	1.148577e-46
MsaG002469	MsaG036065	0.831740	2.539344e-55	7.727785e-53
MsaG002469	MsaG036335	0.828114	1.924325e-54	5.279281e-52
MsaG002469	MsaG038421	0.839098	3.577685e-57	1.357753e-54
MsaG002469	MsaG039178	0.804537	3.476682e-49	5.214533e-47
MsaG002469	MsaG040504	0.817672	5.084130e-52	1.052210e-49
MsaG002469	MsaG040611	0.837228	1.078415e-56	3.862580e-54
MsaG002469	MsaG040714	0.831645	2.679589e-55	8.131772e-53
MsaG002469	MsaG041011	0.802472	9.271729e-49	1.325894e-46
MsaG002469	MsaG041253	0.804456	3.613298e-49	5.409228e-47
MsaG002469	MsaG041336	0.804835	3.014323e-49	4.552555e-47
MsaG002469	MsaG041800	0.843215	2.995790e-58	1.295221e-55
MsaG002469	MsaG042126	0.815144	1.859539e-51	3.607647e-49
MsaG002469	MsaG044104	0.872780	5.019494e-67	6.549234e-64
MsaG002469	MsaG044876	0.807298	9.191043e-50	1.470767e-47
MsaG002469	MsaG044997	0.801048	1.811814e-48	2.508258e-46
MsaG002469	MsaG045641	0.839974	2.123065e-57	8.281277e-55
MsaG002469	MsaG045548	0.807902	6.853136e-50	1.112654e-47
MsaG002469	MsaG046051	0.824449	1.421441e-53	3.522253e-51
MsaG002469	MsaG046381	0.829942	6.975550e-55	2.015470e-52
MsaG002469	MsaG046522	0.812461	7.203672e-51	1.306741e-48
MsaG002469	MsaG046589	0.889755	4.003547e-73	1.165091e-69
MsaG002469	MsaG046769	0.811763	1.021449e-50	1.821136e-48
MsaG002469	MsaG046816	0.815652	1.435476e-51	2.821157e-49
MsaG002469	MsaG046902	0.802206	1.051197e-48	1.494084e-46
MsaG002469	MsaG046939	0.801627	1.380615e-48	1.936606e-46
MsaG002469	MsaG046927	0.820283	1.304245e-52	2.890210e-50
MsaG002469	MsaG002654	0.845571	7.017317e-59	3.276534e-56
MsaG002469	MsaG002035	0.832326	1.821860e-55	5.639120e-53
MsaG002469	MsaG007590	0.800994	1.858317e-48	2.569546e-46
MsaG002469	MsaG011183	0.858231	1.854616e-62	1.348933e-59
MsaG002469	MsaG008796	0.808802	4.414668e-50	7.324244e-48
MsaG002469	MsaG012744	0.804482	3.568651e-49	5.345631e-47
MsaG002469	MsaG013257	0.804960	2.839576e-49	4.300996e-47
MsaG002469	MsaG014993	0.863395	5.099857e-64	4.520683e-61
MsaG002469	MsaG012091	0.826439	4.825923e-54	1.263421e-51
MsaG002469	MsaG012695	0.804344	3.811992e-49	5.692075e-47
MsaG002469	MsaG013496	0.811767	1.019330e-50	1.817547e-48
MsaG002469	MsaG019037	0.809712	2.822948e-50	4.787350e-48
MsaG002469	MsaG018678	0.812387	7.478630e-51	1.354085e-48
MsaG002469	MsaG021169	0.809762	2.753264e-50	4.674865e-48
MsaG002469	MsaG027703	0.831087	3.670315e-55	1.095816e-52
MsaG002469	MsaG028544	0.814457	2.635721e-51	5.025892e-49
MsaG002469	MsaG029390	0.864571	2.203705e-64	2.046645e-61
MsaG002469	MsaG028903	0.804130	4.223155e-49	6.274694e-47
MsaG002469	MsaG033602	0.813920	3.458137e-51	6.506025e-49
MsaG002469	MsaG031280	0.825250	9.217143e-54	2.334506e-51
MsaG002469	MsaG032886	0.806563	1.312562e-49	2.064302e-47
MsaG002469	MsaG032486	0.821602	6.506143e-53	1.492938e-50
MsaG002469	MsaG032931	0.804664	3.271386e-49	4.921032e-47
MsaG002469	MsaG032384	0.822992	3.106112e-53	7.398396e-51
MsaG002469	MsaG032092	0.805630	2.058825e-49	3.167370e-47
MsaG002469	MsaG036054	0.834246	6.087980e-56	1.993723e-53
MsaG002469	MsaG036672	0.809193	3.643177e-50	6.101350e-48
MsaG002469	MsaG037161	0.861361	2.136261e-63	1.749271e-60
MsaG002469	MsaG037827	0.804532	3.484852e-49	5.226194e-47
MsaG002469	MsaG035677	0.858390	1.663584e-62	1.217195e-59
MsaG002469	MsaG036415	0.858900	1.173919e-62	8.754209e-60
MsaG002469	MsaG044531	0.802799	7.945229e-49	1.144692e-46
MsaG002469	MsaG043142	0.838974	3.851450e-57	1.456061e-54

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002469	MtrunA17_Chr1g0175091	96.273	322	10	2	1	322	97	416	0.0	636
MsaG002469	MtrunA17_Chr7g0258551	60.059	338	105	8	1	325	50	370	7.54e-119	347
MsaG002469	MtrunA17_Chr7g0261911	59.441	143	56	2	154	294	252	394	7.68e-56	188
MsaG002469	MtrunA17_Chr1g0190301	60.563	142	50	3	159	294	166	307	1.44e-51	175
MsaG002469	MtrunA17_Chr2g0291021	50.296	169	66	3	164	314	49	217	6.26e-50	169
MsaG002469	MtrunA17_Chr7g0274471	52.174	161	73	3	163	319	217	377	1.85e-48	168
MsaG002469	MtrunA17_Chr7g0254981	50.323	155	64	3	155	296	33	187	1.17e-47	161
MsaG002469	MtrunA17_Chr6g0461641	45.562	169	66	3	160	306	38	202	1.38e-39	143
MsaG002469	MtrunA17_Chr2g0321461	43.011	186	75	4	142	305	27	203	1.19e-38	140
MsaG002469	MtrunA17_Chr1g0175081	71.111	90	26	0	146	235	4	93	1.21e-38	132
MsaG002469	MtrunA17_Chr1g0175071	42.857	203	108	4	100	300	118	314	5.85e-37	134
MsaG002469	MtrunA17_Chr7g0242521	50.365	137	63	3	152	284	2	137	1.67e-36	131
MsaG002469	MtrunA17_Chr5g0409731	46.154	143	63	2	164	292	25	167	1.13e-35	130
MsaG002469	MtrunA17_Chr4g0042451	42.953	149	70	3	160	294	13	160	6.57e-34	127
MsaG002469	MtrunA17_Chr5g0417521	39.073	151	78	1	160	296	11	161	1.23e-33	126
MsaG002469	MtrunA17_Chr2g0290991	42.038	157	76	4	145	287	21	176	3.39e-31	119
MsaG002469	MtrunA17_Chr8g0356501	44.853	136	70	2	164	294	37	172	5.02e-31	119
MsaG002469	MtrunA17_Chr2g0310011	43.165	139	58	2	160	285	31	161	1.33e-30	118
MsaG002469	MtrunA17_Chr7g0258531	36.522	230	119	6	68	294	139	344	7.35e-30	116
MsaG002469	MtrunA17_Chr1g0197171	40.000	135	70	2	164	287	44	178	2.91e-26	105
MsaG002469	MtrunA17_Chr7g0243081	52.055	73	34	1	166	238	73	144	3.56e-16	78.2
MsaG002469	MtrunA17_Chr8g0379121	58.065	62	25	1	166	227	113	173	4.42e-16	78.6
MsaG002469	MtrunA17_Chr2g0320231	59.677	62	24	1	166	227	99	159	5.62e-16	77.8
MsaG002469	MtrunA17_Chr2g0288601	55.738	61	27	0	154	214	61	121	8.20e-16	73.2
MsaG002469	MtrunA17_Chr6g0479431	60.000	55	22	0	166	220	204	258	1.08e-15	77.0
MsaG002469	MtrunA17_Chr3g0109981	60.000	55	22	0	166	220	276	330	1.88e-15	76.6
MsaG002469	MtrunA17_Chr8g0366281	60.000	55	22	0	166	220	175	229	1.89e-15	76.3
MsaG002469	MtrunA17_Chr5g0410741	60.000	55	22	0	166	220	221	275	1.95e-15	76.6
MsaG002469	MtrunA17_Chr1g0162931	62.069	58	21	1	161	217	14	71	3.32e-15	74.7
MsaG002469	MtrunA17_Chr1g0154261	52.381	63	30	0	166	228	128	190	6.82e-15	73.9
MsaG002469	MtrunA17_Chr1g0210911	63.462	52	19	0	166	217	24	75	7.18e-15	74.3
MsaG002469	MtrunA17_Chr3g0095611	54.237	59	27	0	162	220	17	75	1.38e-14	71.6
MsaG002469	MtrunA17_Chr2g0283951	61.224	49	19	0	166	214	91	139	3.88e-13	69.7
MsaG002469	MtrunA17_Chr7g0275401	54.098	61	27	1	157	217	185	244	7.70e-13	67.8
MsaG002469	MtrunA17_Chr4g0062921	43.820	89	45	1	135	223	211	294	1.02e-12	68.6
MsaG002469	MtrunA17_Chr1g0198601	51.667	60	29	0	164	223	211	270	1.35e-12	67.8
MsaG002469	MtrunA17_Chr4g0009901	50.877	57	27	1	162	218	166	221	3.61e-12	65.9
MsaG002469	MtrunA17_Chr4g0045361	53.448	58	27	0	161	218	271	328	7.85e-12	65.9
MsaG002469	MtrunA17_Chr5g0400241	44.444	81	41	2	143	220	287	366	1.39e-11	65.1
MsaG002469	MtrunA17_Chr5g0402631	54.386	57	26	0	162	218	212	268	1.65e-11	64.3
MsaG002469	MtrunA17_Chr5g0422621	41.304	92	48	2	132	218	162	252	2.03e-11	64.3
MsaG002469	MtrunA17_Chr2g0304841	54.545	55	24	1	164	218	213	266	2.64e-11	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002469	AT5G06800.1	81.679	131	23	1	164	293	192	322	1.22e-70	224
MsaG002469	AT5G06800.2	78.676	136	23	2	164	293	192	327	3.54e-68	218
MsaG002469	AT4G28610.1	56.522	161	63	5	147	304	212	368	2.21e-52	178
MsaG002469	AT5G29000.1	45.833	216	91	6	95	297	124	326	2.42e-52	177
MsaG002469	AT5G29000.3	45.833	216	91	6	95	297	124	326	2.42e-52	177
MsaG002469	AT5G29000.2	45.833	216	91	6	95	297	167	369	5.40e-52	177
MsaG002469	AT2G01060.1	53.086	162	70	4	159	317	10	168	7.94e-51	170
MsaG002469	AT3G04450.4	46.078	204	92	6	116	314	157	347	1.08e-50	173
MsaG002469	AT3G04450.2	46.078	204	92	6	116	314	157	347	1.08e-50	173
MsaG002469	AT3G04450.1	46.078	204	92	6	116	314	197	387	2.29e-50	173
MsaG002469	AT3G13040.3	46.597	191	90	5	137	316	211	400	1.88e-46	163
MsaG002469	AT3G13040.1	46.597	191	90	5	137	316	211	400	1.88e-46	163
MsaG002469	AT3G13040.2	46.597	191	90	5	137	316	211	400	1.88e-46	163
MsaG002469	AT2G20400.1	56.923	130	54	2	164	291	231	360	1.57e-43	154
MsaG002469	AT2G20400.2	56.489	131	54	3	164	291	231	361	8.51e-42	150
MsaG002469	AT5G18240.1	45.181	166	74	3	160	308	41	206	1.82e-39	144
MsaG002469	AT5G18240.4	45.181	166	74	3	160	308	41	206	1.82e-39	144
MsaG002469	AT3G04030.3	49.080	163	61	4	160	305	41	198	2.93e-38	140
MsaG002469	AT5G06800.3	90.769	65	6	0	164	228	192	256	5.19e-37	134
MsaG002469	AT1G69580.1	45.806	155	63	3	160	294	30	183	5.52e-37	135
MsaG002469	AT5G18240.5	44.578	166	73	4	160	308	41	204	2.06e-36	135
MsaG002469	AT1G69580.2	44.516	155	66	2	160	294	30	184	2.51e-36	134
MsaG002469	AT4G13640.1	41.667	168	82	3	143	294	14	181	1.17e-35	131
MsaG002469	AT3G24120.1	42.515	167	75	3	149	294	26	192	1.18e-35	131
MsaG002469	AT3G04030.2	47.853	163	62	5	160	305	41	197	3.59e-35	132
MsaG002469	AT1G79430.2	41.379	174	84	4	127	294	8	169	4.19e-35	131
MsaG002469	AT5G18240.2	42.771	166	72	4	160	308	41	200	5.69e-34	129
MsaG002469	AT5G18240.3	42.771	166	72	4	160	308	41	200	5.69e-34	129
MsaG002469	AT4G13640.2	41.176	170	81	4	143	293	14	183	1.17e-33	125
MsaG002469	AT3G24120.2	41.765	170	75	4	149	294	26	195	1.37e-33	125
MsaG002469	AT5G45580.1	43.590	156	58	4	164	294	7	157	2.21e-33	124
MsaG002469	AT5G45580.2	43.590	156	58	4	164	294	23	173	2.81e-33	124
MsaG002469	AT3G04030.1	46.626	163	59	5	160	305	41	192	7.17e-33	125
MsaG002469	AT2G01060.2	51.639	122	53	4	199	317	1	119	7.54e-31	117
MsaG002469	AT3G12730.1	39.106	179	92	7	164	325	23	201	1.23e-26	105
MsaG002469	AT3G04450.3	65.672	67	23	0	158	224	232	298	1.92e-26	107
MsaG002469	AT5G29000.4	63.768	69	25	0	159	227	226	294	1.36e-25	104
MsaG002469	AT3G04030.5	44.882	127	48	4	196	305	1	122	7.69e-19	85.9
MsaG002469	AT1G79430.1	42.857	105	53	3	196	294	1	104	1.45e-18	84.7
MsaG002469	AT4G04605.1	54.412	68	31	0	153	220	3	70	6.60e-17	79.0
MsaG002469	AT2G42660.1	53.731	67	31	0	162	228	48	114	1.57e-16	78.6
MsaG002469	AT2G06020.1	46.053	76	40	1	145	220	68	142	5.88e-16	77.4
MsaG002469	AT2G38300.1	55.556	63	27	1	166	228	56	117	9.96e-16	77.4
MsaG002469	AT2G02060.2	49.383	81	33	1	145	217	2	82	1.07e-15	76.3
MsaG002469	AT2G02060.1	49.383	81	33	1	145	217	2	82	1.07e-15	76.3
MsaG002469	AT5G16560.1	60.000	55	22	0	166	220	221	275	2.16e-15	76.6
MsaG002469	AT1G32240.2	55.738	61	27	0	166	226	215	275	2.40e-15	76.3
MsaG002469	AT1G32240.1	55.738	61	27	0	166	226	215	275	2.52e-15	76.6
MsaG002469	AT1G14600.1	60.000	55	22	0	166	220	25	79	2.73e-15	75.1
MsaG002469	AT5G18240.6	36.923	130	59	4	196	308	1	124	4.38e-15	75.1
MsaG002469	AT5G42630.2	52.174	69	31	1	166	232	107	175	5.65e-15	73.6
MsaG002469	AT4G17695.1	60.000	55	22	0	166	220	166	220	5.98e-15	74.7
MsaG002469	AT2G40260.1	56.522	69	25	2	157	220	70	138	8.09e-15	75.1
MsaG002469	AT5G42630.1	52.174	69	31	1	166	232	107	175	8.56e-15	73.9
MsaG002469	AT3G04030.4	41.732	127	46	5	196	305	1	116	7.91e-14	71.6
MsaG002469	AT4G04580.1	49.231	65	33	0	153	217	3	67	8.07e-14	68.9
MsaG002469	AT4G37180.1	62.264	53	20	0	166	218	212	264	8.31e-14	71.6
MsaG002469	AT4G37180.2	62.264	53	20	0	166	218	219	271	1.06e-13	71.6
MsaG002469	AT2G03500.1	50.000	70	32	1	164	230	233	302	1.15e-12	68.9
MsaG002469	AT4G04555.1	50.746	67	28	1	156	217	1	67	1.16e-12	63.9
MsaG002469	AT5G58080.1	53.226	62	28	1	157	218	187	247	2.32e-12	68.2
MsaG002469	AT3G16857.3	58.182	55	22	1	164	218	167	220	7.45e-12	66.6
MsaG002469	AT3G16857.1	58.182	55	22	1	164	218	237	290	1.00e-11	66.2
MsaG002469	AT3G16857.2	58.182	55	22	1	164	218	237	290	1.02e-11	66.2
MsaG002469	AT4G37180.3	61.224	49	19	0	166	214	212	260	2.84e-11	63.5
MsaG002469	AT3G25790.1	50.000	58	29	0	169	226	201	258	4.77e-11	63.5
MsaG002469	AT1G49190.1	45.070	71	33	2	164	228	215	285	7.70e-11	63.2
MsaG002469	AT1G25550.1	46.667	75	36	1	164	238	209	279	8.67e-11	62.8

Find 47 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCAATTGAACACTCAAAATT+TGG	0.140920	1:-41839728	MsaT002469.1:CDS
TCAATATCTTTAGGACTAAT+TGG	0.223277	1:+41839682	None:intergenic
TTCTAATAAGGTTAATGATT+TGG	0.230770	1:-41842554	MsaT002469.1:CDS
TTTCCATTAGAATGAATTAA+TGG	0.240080	1:+41842313	None:intergenic
TCCATTACAAGCAGGGTTTC+CGG	0.269736	1:+41842070	None:intergenic
TACTACTTGTCTTCTGTTGT+TGG	0.302160	1:+41839755	None:intergenic
AGTCCATTAATTCATTCTAA+TGG	0.307810	1:-41842316	MsaT002469.1:CDS
AAATTACCTTGAGCTTGTTC+TGG	0.349173	1:+41841530	None:intergenic
GGAAATGTCTCAACGAATTC+CGG	0.350677	1:-41842089	MsaT002469.1:CDS
CAACACCGAAAGCGATATTA+AGG	0.350678	1:-41841628	MsaT002469.1:CDS
ACATTTCCTGTTGACATAGT+TGG	0.376397	1:+41842104	None:intergenic
ATGGTAACCTCAATATCTTT+AGG	0.378705	1:+41839673	None:intergenic
ATCAGCCTTAATATCGCTTT+CGG	0.385906	1:+41841623	None:intergenic
GAAAATTGAGATATCAAAAG+AGG	0.399023	1:+41842577	None:intergenic
ATTGATTTGTTGTTGAATCA+AGG	0.420361	1:+41842500	None:intergenic
CCACAATATGATTACCAAGT+TGG	0.422118	1:-41842616	MsaT002469.1:CDS
GGAATTCCCTTTGTATCAAA+GGG	0.429673	1:-41842533	MsaT002469.1:CDS
CTGTCTCCAACTATGTCAAC+AGG	0.441628	1:-41842110	MsaT002469.1:CDS
ATTTGAAATTACATGGATGA+TGG	0.447971	1:+41839400	None:intergenic
TACTACTTTCATTTCCAACT+TGG	0.455279	1:+41842602	None:intergenic
GAGAAATTCAGCTGTGAACC+TGG	0.457308	1:+41842149	None:intergenic
TGGAATTCCCTTTGTATCAA+AGG	0.460488	1:-41842534	MsaT002469.1:CDS
TCCGGAAACCCTGCTTGTAA+TGG	0.462303	1:-41842071	MsaT002469.1:CDS
TGAAGGAATTTGAAATTACA+TGG	0.479915	1:+41839393	None:intergenic
AAAATTACAGTTGCGAATAG+AGG	0.499177	1:-41839809	MsaT002469.1:CDS
CCAACTTGGTAATCATATTG+TGG	0.502891	1:+41842616	None:intergenic
AATTAGTCCTAAAGATATTG+AGG	0.504863	1:-41839680	MsaT002469.1:intron
CCCTGCTTGTAATGGATCAT+CGG	0.507035	1:-41842063	MsaT002469.1:CDS
GTTGAGTGTGTGAATCGCCT+TGG	0.507842	1:-41841990	MsaT002469.1:CDS
CTCTAGGAAAATTCCCACAT+TGG	0.519236	1:+41842401	None:intergenic
ACCGATGATCCATTACAAGC+AGG	0.527035	1:+41842062	None:intergenic
CAAGTAAAACACGAATAAGA+TGG	0.534054	1:-41842037	MsaT002469.1:CDS
CAGTGGCTTGCAAATTAGAG+AGG	0.550038	1:-41840646	MsaT002469.1:CDS
CAACAGAAGACAAGTAGTAA+TGG	0.550074	1:-41839751	MsaT002469.1:CDS
CCGATGATCCATTACAAGCA+GGG	0.564544	1:+41842063	None:intergenic
AATTTGACAACTCAAAATTG+TGG	0.568956	1:+41842473	None:intergenic
AAAATTGAGATATCAAAAGA+GGG	0.579511	1:+41842578	None:intergenic
AGCTGCAGCTAGACGTTCAG+AGG	0.587380	1:-41840617	MsaT002469.1:CDS
GAAAGCGATATTAAGGCTGA+TGG	0.589838	1:-41841621	MsaT002469.1:CDS
GAGTGTGTGAATCGCCTTGG+CGG	0.593858	1:-41841987	MsaT002469.1:CDS
TTAAGGCTGATGGATTCAGA+TGG	0.601499	1:-41841611	MsaT002469.1:CDS
AATCCAATAAAATCCAATGT+GGG	0.615499	1:-41842414	MsaT002469.1:CDS
AAATCCAATAAAATCCAATG+TGG	0.616777	1:-41842415	MsaT002469.1:CDS
ACTTACTCTCGGCACCGCCA+AGG	0.616888	1:+41841973	None:intergenic
GCGTCTTCATGAACAACTAG+AGG	0.636358	1:-41840595	MsaT002469.1:intron
TATATGCCAGAACAAGCTCA+AGG	0.643937	1:-41841536	MsaT002469.1:intron
CAGTTGCGAATAGAGGAACA+AGG	0.704497	1:-41839802	MsaT002469.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	41839408	41842647	41839408	ID=MsaG002469
Chr1	mRNA	41839408	41842647	41839408	ID=MsaT002469.1;Parent=MsaG002469
Chr1	exon	41839408	41839425	41839408	ID=MsaT002469.1.exon7;Parent=MsaT002469.1
Chr1	CDS	41839408	41839425	41839408	ID=cds.MsaT002469.1;Parent=MsaT002469.1
Chr1	exon	41839681	41839839	41839681	ID=MsaT002469.1.exon6;Parent=MsaT002469.1
Chr1	CDS	41839681	41839839	41839681	ID=cds.MsaT002469.1;Parent=MsaT002469.1
Chr1	exon	41840596	41840665	41840596	ID=MsaT002469.1.exon5;Parent=MsaT002469.1
Chr1	CDS	41840596	41840665	41840596	ID=cds.MsaT002469.1;Parent=MsaT002469.1
Chr1	exon	41840776	41840827	41840776	ID=MsaT002469.1.exon4;Parent=MsaT002469.1
Chr1	CDS	41840776	41840827	41840776	ID=cds.MsaT002469.1;Parent=MsaT002469.1
Chr1	exon	41841537	41841653	41841537	ID=MsaT002469.1.exon3;Parent=MsaT002469.1
Chr1	CDS	41841537	41841653	41841537	ID=cds.MsaT002469.1;Parent=MsaT002469.1
Chr1	exon	41841979	41842195	41841979	ID=MsaT002469.1.exon2;Parent=MsaT002469.1
Chr1	CDS	41841979	41842195	41841979	ID=cds.MsaT002469.1;Parent=MsaT002469.1
Chr1	exon	41842300	41842647	41842300	ID=MsaT002469.1.exon1;Parent=MsaT002469.1
Chr1	CDS	41842300	41842647	41842300	ID=cds.MsaT002469.1;Parent=MsaT002469.1

Gene Sequence

>MsaT002469.1

ATGGGTTTTCCACAATATGATTACCAAGTTGGAAATGAAAGTAGTAACCCTCTTTTGATATCTCAATTTTCTTCTAATAAGGTTAATGATTTGGAATTCCCTTTGTATCAAAGGGAAAATCATTACCTTGATTCAACAACAAATCAATCTAGCCACAATTTTGAGTTGTCAAATTTAAACACTTTGCAACCAATTCTTAGATCTCCTGAAAAATCCAATAAAATCCAATGTGGGAATTTTCCTAGAGAAAATTTTCTCTCAGTTGAGCAACATAAATTCTTCATTGATGATGCTGCATCAGTTAGTATGAGTCCATTAATTCATTCTAATGGAAATCAAGATCATAAAGTTTCTTGTGGTTCATATGATTTTCCAGGTTCACAGCTGAATTTCTCTTATCAGCAAGATAAACTGTCTCCAACTATGTCAACAGGAAATGTCTCAACGAATTCCGGAAACCCTGCTTGTAATGGATCATCGGTTTCAAGTAAAACACGAATAAGATGGACTCAAGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGCGGTGCCGAGAAGGCAACACCGAAAGCGATATTAAGGCTGATGGATTCAGATGGATTGACAATTTTCCATGTTAAAAGTCATTTGCAGAAGTATAGAATTGCAAAATATATGCCAGAACAAGCTCAAGGGAAACCCGAGAAAAGAACTCATGTAGAGAATGTGAATCTTGATGCCAAATCTGGCTTGCAAATTAGAGAGGCACTTCAGCTGCAGCTAGACGTTCAGAGGCGTCTTCATGAACAACTAGAGATTCAGCGAAAATTACAGTTGCGAATAGAGGAACAAGGAAAGCAGTTGAAGATGATGTTTGACCAACAACAGAAGACAAGTAGTAATGGCCAATTGAACACTCAAAATTTGGACAATACAACAAACAATGATATACCAATTAGTCCTAAAGATATTGAGGTTCCATCATCCATGTAA

Protein sequence

>MsaT002469.1

MGFPQYDYQVGNESSNPLLISQFSSNKVNDLEFPLYQRENHYLDSTTNQSSHNFELSNLNTLQPILRSPEKSNKIQCGNFPRENFLSVEQHKFFIDDAASVSMSPLIHSNGNQDHKVSCGSYDFPGSQLNFSYQQDKLSPTMSTGNVSTNSGNPACNGSSVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRIAKYMPEQAQGKPEKRTHVENVNLDAKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSSNGQLNTQNLDNTTNNDIPISPKDIEVPSSM*