AlfalfaGEDB | MsaG002492

M. sativa ssp. caerulea / MsaG002492

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002492	GAU37519.1	70.803	685	123	11	4	620	1	676	0.0	926

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002492	sp\|Q9FG33\|LRKS5_ARATH	48.097	657	274	17	15	620	12	652	0.0	563

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002492	tr\|A0A2Z6P1J4\|A0A2Z6P1J4_TRISU	70.803	685	123	11	4	620	1	676	0.0	926

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002492	MtrunA17_Chr1g0175411	75.410	671	101	12	1	620	1	658	0.0	909
MsaG002492	MtrunA17_Chr1g0175451	70.448	670	133	12	8	620	1	662	0.0	893
MsaG002492	MtrunA17_Chr1g0175421	78.947	456	47	6	214	620	1	456	0.0	682
MsaG002492	MtrunA17_Chr5g0407721	33.849	647	354	15	31	614	43	678	1.13e-108	342
MsaG002492	MtrunA17_Chr8g0367071	34.869	651	345	22	9	595	12	647	7.85e-93	300
MsaG002492	MtrunA17_Chr4g0049601	34.390	631	313	22	30	587	39	641	9.55e-93	300
MsaG002492	MtrunA17_Chr1g0170201	36.396	566	292	21	76	591	93	640	1.12e-90	294
MsaG002492	MtrunA17_Chr7g0239381	35.789	570	288	19	76	580	64	620	6.27e-89	290
MsaG002492	MtrunA17_Chr7g0239371	35.395	582	291	20	65	580	54	616	1.05e-88	289
MsaG002492	MtrunA17_Chr4g0049581	35.174	634	330	26	7	587	30	635	2.14e-86	284

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002492	AT5G06740.1	48.097	657	274	17	15	620	12	652	0.0	563
MsaG002492	AT5G06740.2	48.097	657	274	17	15	620	24	664	0.0	563
MsaG002492	AT5G55830.1	34.050	605	291	17	75	589	69	655	2.13e-96	310
MsaG002492	AT4G02420.1	36.519	586	290	15	71	585	60	634	1.94e-95	307
MsaG002492	AT4G02410.1	34.135	624	324	17	71	619	61	672	1.48e-93	302
MsaG002492	AT3G53810.1	35.929	565	292	17	88	588	77	635	4.19e-93	301
MsaG002492	AT2G37710.1	34.483	580	310	14	70	585	58	631	7.61e-92	298
MsaG002492	AT5G10530.1	35.965	570	303	20	75	587	57	621	5.74e-88	287
MsaG002492	AT4G29050.1	34.146	574	299	17	76	580	60	623	2.24e-85	280
MsaG002492	AT4G29050.2	34.146	574	299	17	76	580	74	637	3.40e-85	280

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Find 122 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCCAACTTTGGTAA+CGG	0.602699	1:-42169836	None:intergenic
AAAATAATCGCTTGTTGATT+TGG	0.217690	1:+42170592	MsaT002492.1:CDS
AAACTTCCAACCGCAGGATG+AGG	0.519152	1:+42169873	MsaT002492.1:CDS
AAAGGAAATTGCAGGAACAC+CGG	0.613189	1:+42171294	MsaT002492.1:intron
AAGCTCGGTGAAGGTGGATT+TGG	0.325174	1:+42170810	MsaT002492.1:CDS
AAGGAATTGATGAAAGCAAC+AGG	0.480444	1:+42170768	MsaT002492.1:CDS
AAGGCCATGCCTTCTCCACC+AGG	0.532148	1:-42170102	None:intergenic
AATAGCTGGGGTAATTTGGA+TGG	0.568552	1:-42169938	None:intergenic
AATGGTTCCGATTGAAAGAC+CGG	0.484048	1:+42171652	MsaT002492.1:CDS
AATTGGCCTCATCCTGCGGT+TGG	0.555969	1:-42169879	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	42169775	42171775	42169775	ID=MsaG002492
Chr1	mRNA	42169775	42171775	42169775	ID=MsaT002492.1;Parent=MsaG002492
Chr1	exon	42169775	42171018	42169775	ID=MsaT002492.1.exon1;Parent=MsaT002492.1
Chr1	CDS	42169775	42171018	42169775	ID=cds.MsaT002492.1;Parent=MsaT002492.1
Chr1	exon	42171111	42171261	42171111	ID=MsaT002492.1.exon2;Parent=MsaT002492.1
Chr1	CDS	42171111	42171261	42171111	ID=cds.MsaT002492.1;Parent=MsaT002492.1
Chr1	exon	42171308	42171775	42171308	ID=MsaT002492.1.exon3;Parent=MsaT002492.1
Chr1	CDS	42171308	42171775	42171308	ID=cds.MsaT002492.1;Parent=MsaT002492.1

Gene Sequence

>MsaT002492.1

ATGGTGAACTTGTCTTTGCTACTCCAATATCAATCATCAGCACTCATATTCAGTATCATAGCCGTTACCAAAGTTGGCTGTTTTTATTTCAATTTCCCAAACTTCCAACCGCAGGATGAGGCCAATTTTCTACTAAGCAAAGACTCAGGCATTTACTTAGATGCCATCCAAATTACCCCAGCTATTGTTGGTGATGAAACTCCTCGTGTTACGATTTATTACTCTGGTCGTGCTTTTTACAAAAACCCCTTCACAATTTGGAACAAAAACAAAACAATGGCTTCCTTCAACACCACTTTTGTTCTCAACACAAGTCCTGTAACTTCCCCTGGTGGAGAAGGCATGGCCTTTATCTTAGCTTCAGATACAACTCTCCCAGATGAAAGTGATGAACAATGGCTCGGTATTGTAAATGCTTCCACAGACGGAGAATCTCGGGCACAAATTTTTGCAGTGGAGTTCGACACACGACAAAGTTCCAGATGGGATGGTCCTCACAACCATGTTGGAATCAACATAAATAGCATCTCTTCTTTGAAACAAGCATCATTGGAAAACACTAAGGTCAATCTTTCATCTGGTTTAGATGTAACTGTGAGAATTCAATATTCCAATGATATAATATCTGTTTTTGCTTCAATGGGTGACAATTCACAAGATTCTTTGGAGACCCTTTTGGTATCTCCACCTCTGAATCTCTCTTCTTATCTTAAACAAGAGGTTTATGTTGGTTTCTCTGCTTCAACAAGCAATTACACAGAGTTAAACTGTGTAAGAGCATGGGAATTCAATGGTGTAGATATTGCACATAGTAATAAAAATAATCGCTTGTTGATTTGGATTATAATTCCAACTGTGACAATCATAGGTGTGTTAGTAATTTTCTTGGTTTATCGGAAAGGGAAAAGATGTGTGGAGATTCAAGAAGATACATATCCAAGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATCGACTAAAGGAATTGATGAAAGCAACAGGTGGATTCAGCCATCAGAACAAGCTCGGTGAAGGTGGATTTGGAACTGTTTATAAGGGAATCCTTGGAAAAATCAATAAAGAGATAGCTGTGAAGAGAGTCTCCAAGAATTCACAAGGAAAGAAAGAATTTCTAGCTGAAGTTACAACAATTGGAAGCCTTCATCACAAAAACTTAGTGAAGCTCATTGGTTGGTGCTATGAGAAAAAAGAGCTTCTCATTGTTTACGAGAATGGTGTGATTCGTGACGTGGCGCAGGCATTGGATTATCTTCACAATGGTTGTGAAAAAAAGGTACTGCATAGAGACATTAAAGCAAGCAACATAATGCTGGATTTTGATTACGTTGCAAAATTGGGTGATTTTGGATTGGCGCGAATAGAACACCGGCTATATGGCACCGGAAATATTTTTAACCGAAGAGCGACTGTTGAAACAGATGTTTATGCATTTGGTGTACTTGTTTTGGAAGTTGTGTGTGGAAAAAGACCAAGAAATATGTATGCACAAGATGATTATAAATATAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAATGGAAAAATTGTTAGTGCAGTTGATGATAGGATTAGTGAAGAGGATGAAATTGAAAAGGTTGAAATTGTGCTTCTTCTTGGGTTGTCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAAAACTGTTTTGATGGTTCTTAATGGAGAAGCTTCTCCTCCAATGGTTCCGATTGAAAGACCGGCTTTTGTTTGGCCTGCTATGCCTTCATCTCTCAAACAAAATGAAAATTGTTCTCTAATCAGTGGAACTCTCACTCCATTGACTCAACTTAGTGGCAGATAG

Protein sequence

>MsaT002492.1

MVNLSLLLQYQSSALIFSIIAVTKVGCFYFNFPNFQPQDEANFLLSKDSGIYLDAIQITPAIVGDETPRVTIYYSGRAFYKNPFTIWNKNKTMASFNTTFVLNTSPVTSPGGEGMAFILASDTTLPDESDEQWLGIVNASTDGESRAQIFAVEFDTRQSSRWDGPHNHVGININSISSLKQASLENTKVNLSSGLDVTVRIQYSNDIISVFASMGDNSQDSLETLLVSPPLNLSSYLKQEVYVGFSASTSNYTELNCVRAWEFNGVDIAHSNKNNRLLIWIIIPTVTIIGVLVIFLVYRKGKRCVEIQEDTYPRIEDQIQHSSMAPKKYRLKELMKATGGFSHQNKLGEGGFGTVYKGILGKINKEIAVKRVSKNSQGKKEFLAEVTTIGSLHHKNLVKLIGWCYEKKELLIVYENGVIRDVAQALDYLHNGCEKKVLHRDIKASNIMLDFDYVAKLGDFGLARIEHRLYGTGNIFNRRATVETDVYAFGVLVLEVVCGKRPRNMYAQDDYKYSIVYWVWELYGNGKIVSAVDDRISEEDEIEKVEIVLLLGLSCCHPNPNERPSMKTVLMVLNGEASPPMVPIERPAFVWPAMPSSLKQNENCSLISGTLTPLTQLSGR*