AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG002503

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG002503 MtrunA17_Chr1g0175601 96.111 180 6 1 1 179 1 180 6.50e-124 346
MsaG002503 MtrunA17_Chr1g0180591 81.006 179 34 0 1 179 1 179 8.40e-105 298
MsaG002503 MtrunA17_Chr1g0169761 79.330 179 37 0 1 179 1 179 1.26e-102 292
MsaG002503 MtrunA17_Chr1g0175611 85.119 168 25 0 1 168 1 168 2.10e-102 291
MsaG002503 MtrunA17_Chr4g0074101 69.898 196 42 1 1 179 1 196 9.84e-95 273
MsaG002503 MtrunA17_Chr8g0376821 79.518 166 34 0 1 166 1 166 2.03e-93 269
MsaG002503 MtrunA17_Chr8g0357771 57.865 178 75 0 1 178 1 178 4.10e-70 210
MsaG002503 MtrunA17_Chr8g0356071 52.381 168 74 2 1 168 1 162 1.37e-53 167
MsaG002503 MtrunA17_Chr4g0052061 39.634 164 87 3 1 164 1 152 5.03e-31 110
MsaG002503 MtrunA17_Chr3g0119901 39.053 169 86 4 1 157 8 171 2.85e-29 107
MsaG002503 MtrunA17_Chr3g0099411 42.029 138 77 2 2 136 9 146 3.89e-29 107
MsaG002503 MtrunA17_Chr1g0206991 44.444 117 55 2 2 112 9 121 3.38e-26 98.6
MsaG002503 MtrunA17_Chr1g0206721 45.133 113 60 1 2 112 9 121 3.50e-26 100
MsaG002503 MtrunA17_Chr3g0085241 43.860 114 62 1 1 112 40 153 6.65e-26 99.4
MsaG002503 MtrunA17_Chr5g0419601 33.533 167 93 3 1 152 8 171 9.11e-26 99.0
MsaG002503 MtrunA17_Chr1g0206701 45.946 111 57 2 2 110 9 118 1.81e-25 98.2
MsaG002503 MtrunA17_Chr3g0099421 45.045 111 58 2 2 110 34 143 4.93e-25 97.4
MsaG002503 MtrunA17_Chr1g0149391 44.144 111 59 2 2 110 9 118 1.49e-24 95.9
MsaG002503 MtrunA17_Chr1g0208561 43.564 101 55 1 2 100 9 109 3.70e-24 94.4
MsaG002503 MtrunA17_Chr2g0300421 43.564 101 55 1 2 100 9 109 4.50e-24 92.8
MsaG002503 MtrunA17_Chr3g0089141 53.247 77 36 0 2 78 9 85 4.92e-24 94.4
MsaG002503 MtrunA17_Chr8g0355091 44.144 111 59 2 2 110 9 118 6.36e-24 94.0
MsaG002503 MtrunA17_Chr2g0292791 54.545 77 35 0 2 78 9 85 6.85e-24 94.0
MsaG002503 MtrunA17_Chr2g0325971 43.243 111 60 2 2 110 9 118 1.61e-23 92.8
MsaG002503 MtrunA17_Chr4g0052081 37.584 149 82 3 1 143 1 144 5.02e-23 90.1
MsaG002503 MtrunA17_Chr1g0188671 43.564 101 55 1 2 100 47 147 7.60e-23 92.0
MsaG002503 MtrunA17_Chr1g0187361 51.948 77 37 0 2 78 9 85 8.10e-23 91.3
MsaG002503 MtrunA17_Chr1g0208581 42.574 101 56 1 2 100 9 109 9.61e-23 90.9
MsaG002503 MtrunA17_Chr3g0089151 41.818 110 62 1 2 109 9 118 2.41e-22 87.0
MsaG002503 MtrunA17_Chr2g0333981 36.879 141 72 3 1 138 11 137 3.34e-22 88.2
MsaG002503 MtrunA17_Chr2g0300441 44.068 118 61 3 2 117 9 123 4.02e-22 89.4
MsaG002503 MtrunA17_Chr2g0317481 47.436 78 41 0 2 79 9 86 1.03e-21 88.2
MsaG002503 MtrunA17_Chr2g0317451 47.436 78 41 0 2 79 9 86 1.07e-21 88.2
MsaG002503 MtrunA17_Chr5g0422421 53.623 69 32 0 2 70 9 77 1.75e-21 87.8
MsaG002503 MtrunA17_Chr1g0206691 45.361 97 51 1 18 112 8 104 1.22e-20 85.1
MsaG002503 MtrunA17_Chr5g0422941 48.000 75 39 0 2 76 9 83 2.97e-20 84.3
MsaG002503 MtrunA17_Chr4g0018951 38.889 126 62 3 14 139 24 134 6.02e-20 82.0
MsaG002503 MtrunA17_Chr7g0246431 40.385 104 59 1 1 104 1 101 1.37e-19 82.0
MsaG002503 MtrunA17_Chr4g0020221 42.453 106 55 1 1 100 1 106 1.60e-19 82.8
MsaG002503 MtrunA17_Chr8g0380021 43.269 104 56 1 1 104 17 117 2.00e-19 82.4
MsaG002503 MtrunA17_Chr8g0379021 44.186 86 46 1 2 85 12 97 2.00e-19 80.9
MsaG002503 MtrunA17_Chr3g0097101 42.453 106 58 1 1 106 16 118 9.80e-19 80.5
MsaG002503 MtrunA17_Chr7g0238991 55.224 67 30 0 13 79 32 98 1.27e-18 80.1
MsaG002503 MtrunA17_Chr2g0284911 42.308 104 57 1 1 104 16 116 2.69e-18 79.7
MsaG002503 MtrunA17_Chr5g0427921 56.667 60 26 0 1 60 1 60 6.03e-18 73.9
MsaG002503 MtrunA17_Chr1g0187351 55.738 61 26 1 18 77 8 68 7.12e-18 73.9
MsaG002503 MtrunA17_Chr8g0351041 38.462 104 62 1 1 104 1 102 1.20e-17 75.9
MsaG002503 MtrunA17_Chr1g0173161 50.769 65 32 0 1 65 1 65 1.53e-17 73.6
MsaG002503 MtrunA17_Chr2g0279821 52.174 69 33 0 1 69 1 69 1.87e-17 77.0
MsaG002503 MtrunA17_Chr5g0427401 39.823 113 54 4 1 105 1 107 4.19e-17 75.9
MsaG002503 MtrunA17_Chr3g0111841 44.928 69 37 1 8 75 2 70 5.64e-17 71.6
MsaG002503 MtrunA17_Chr8g0351051 34.014 147 81 5 1 143 1 135 7.71e-17 75.5
MsaG002503 MtrunA17_Chr8g0351031 38.462 104 62 1 1 104 1 102 7.92e-17 75.1
MsaG002503 MtrunA17_Chr3g0077501 53.226 62 29 0 1 62 1 62 9.11e-17 74.7
MsaG002503 MtrunA17_Chr5g0412461 37.838 111 63 2 1 106 1 110 1.43e-16 74.3
MsaG002503 MtrunA17_Chr4g0071601 51.429 70 34 0 1 70 11 80 3.28e-16 72.8
MsaG002503 MtrunA17_Chr4g0049541 47.826 69 36 0 1 69 1 69 6.00e-16 72.8
MsaG002503 MtrunA17_Chr5g0412271 36.937 111 64 2 1 106 1 110 1.02e-15 72.0
MsaG002503 MtrunA17_Chr6g0474371 34.532 139 81 4 1 134 1 134 1.08e-15 71.2
MsaG002503 MtrunA17_Chr5g0411691 40.777 103 55 2 1 103 1 97 1.14e-15 72.4
MsaG002503 MtrunA17_Chr4g0057151 46.377 69 37 0 1 69 1 69 1.19e-15 71.6
MsaG002503 MtrunA17_Chr5g0425191 60.000 50 20 0 1 50 1 50 1.57e-15 68.9
MsaG002503 MtrunA17_Chr3g0142191 51.667 60 29 0 1 60 1 60 1.61e-15 71.6
MsaG002503 MtrunA17_Chr1g0164791 59.184 49 20 0 1 49 1 49 2.25e-15 71.2
MsaG002503 MtrunA17_Chr5g0404951 48.387 62 32 0 1 62 1 62 2.31e-15 71.2
MsaG002503 MtrunA17_Chr1g0204111 46.377 69 37 0 1 69 17 85 2.59e-15 71.6
MsaG002503 MtrunA17_Chr5g0420081 36.190 105 63 2 1 104 1 102 2.97e-15 70.9
MsaG002503 MtrunA17_Chr4g0049901 47.692 65 34 0 1 65 27 91 3.24e-15 70.9
MsaG002503 MtrunA17_Chr5g0420091 52.632 57 27 0 1 57 1 57 3.59e-15 70.5
MsaG002503 MtrunA17_Chr4g0044071 55.769 52 23 0 1 52 1 52 4.42e-15 67.8
MsaG002503 MtrunA17_Chr4g0061671 38.318 107 56 3 1 104 1 100 5.24e-15 69.3
MsaG002503 MtrunA17_Chr7g0220121 37.778 90 50 2 1 84 1 90 5.74e-15 70.5
MsaG002503 MtrunA17_Chr2g0308251 41.096 73 42 1 1 72 1 73 5.96e-15 66.6
MsaG002503 MtrunA17_Chr8g0377561 52.632 57 27 0 1 57 1 57 6.08e-15 67.0
MsaG002503 MtrunA17_Chr7g0220111 52.632 57 27 0 1 57 1 57 6.61e-15 70.5
MsaG002503 MtrunA17_Chr5g0417661 51.852 54 26 0 1 54 56 109 7.41e-15 67.8
MsaG002503 MtrunA17_Chr1g0159661 40.000 65 39 0 1 65 1 65 7.50e-15 68.9
MsaG002503 MtrunA17_Chr3g0111931 47.541 61 32 0 18 78 6 66 9.24e-15 67.0
MsaG002503 MtrunA17_Chr8g0366231 59.184 49 20 0 1 49 1 49 1.08e-14 69.7
MsaG002503 MtrunA17_Chr7g0246381 57.143 49 21 0 1 49 1 49 1.25e-14 65.5
MsaG002503 MtrunA17_Chr4g0061691 49.123 57 29 0 1 57 1 57 1.47e-14 68.9
MsaG002503 MtrunA17_Chr3g0122251 54.386 57 26 0 1 57 1 57 1.48e-14 69.3
MsaG002503 MtrunA17_Chr3g0125241 41.538 65 38 0 1 65 26 90 1.92e-14 68.2
MsaG002503 MtrunA17_Chr6g0455511 52.632 57 27 0 1 57 1 57 2.59e-14 68.6
MsaG002503 MtrunA17_Chr3g0134451 41.026 78 45 1 1 77 1 78 7.03e-14 68.2
MsaG002503 MtrunA17_Chr1g0166611 68.182 44 14 0 15 58 19 62 1.43e-13 64.3
MsaG002503 MtrunA17_Chr4g0018421 47.541 61 32 0 1 61 1 61 3.97e-13 64.7
MsaG002503 MtrunA17_Chr4g0060841 39.241 79 46 1 1 77 1 79 6.12e-13 65.9
MsaG002503 MtrunA17_Chr3g0111831 52.083 48 23 0 18 65 20 67 3.28e-12 59.7
MsaG002503 MtrunA17_Chr8g0345001 43.478 69 39 0 3 71 19 87 4.84e-12 61.6
MsaG002503 MtrunA17_Chr3g0093131 49.057 53 26 1 19 70 36 88 6.53e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG002503 AT2G34440.1 41.667 180 77 5 1 161 1 171 2.81e-35 122
MsaG002503 AT3G66656.1 74.242 66 17 0 1 66 1 66 2.70e-31 112
MsaG002503 AT2G24840.1 40.800 125 66 2 1 121 62 182 5.44e-28 105
MsaG002503 AT5G60440.1 40.127 157 75 3 2 154 7 148 1.20e-26 102
MsaG002503 AT1G01530.1 41.007 139 78 2 1 139 6 140 3.24e-24 95.5
MsaG002503 AT1G65360.1 37.168 113 71 0 1 113 6 118 6.79e-21 86.3
MsaG002503 AT3G57230.2 33.544 158 92 5 1 158 1 145 2.17e-20 82.8
MsaG002503 AT3G57230.1 33.136 169 100 5 1 169 1 156 1.28e-19 83.2
MsaG002503 AT3G57230.4 33.136 169 100 5 1 169 1 156 1.28e-19 83.2
MsaG002503 AT1G47760.1 42.000 100 46 2 1 100 1 88 1.33e-19 82.0
MsaG002503 AT5G13790.2 43.564 101 45 2 1 100 1 90 1.75e-19 83.2
MsaG002503 AT4G36590.1 36.496 137 57 3 2 120 7 131 4.06e-19 82.0
MsaG002503 AT5G13790.1 50.725 69 34 0 1 69 1 69 1.26e-18 80.9
MsaG002503 AT2G22630.1 36.691 139 59 4 1 139 1 110 1.33e-18 80.1
MsaG002503 AT2G22630.2 36.691 139 59 4 1 139 1 110 1.33e-18 80.1
MsaG002503 AT1G72350.1 38.519 135 69 4 2 129 43 170 1.39e-18 80.1
MsaG002503 AT2G45660.2 38.889 108 63 2 1 108 1 105 1.42e-18 78.6
MsaG002503 AT3G61120.1 54.839 62 28 0 1 62 1 62 2.12e-18 80.1
MsaG002503 AT2G45660.1 38.889 108 63 2 1 108 1 105 6.81e-18 78.2
MsaG002503 AT4G37940.1 52.174 69 33 0 1 69 1 69 8.51e-18 78.2
MsaG002503 AT4G22950.2 39.815 108 61 1 1 108 1 104 1.00e-17 76.6
MsaG002503 AT4G37940.3 43.269 104 54 2 1 100 1 103 1.10e-17 76.6
MsaG002503 AT4G37940.4 52.174 69 33 0 1 69 1 69 1.16e-17 77.4
MsaG002503 AT4G09960.6 40.952 105 59 1 1 105 2 103 1.47e-17 77.4
MsaG002503 AT4G09960.2 40.952 105 59 1 1 105 1 102 1.50e-17 77.0
MsaG002503 AT4G09960.1 40.952 105 59 1 1 105 1 102 1.51e-17 77.4
MsaG002503 AT3G58780.1 40.566 106 60 1 1 106 16 118 1.80e-17 77.4
MsaG002503 AT3G57390.3 49.275 69 35 0 1 69 1 69 2.01e-17 77.0
MsaG002503 AT3G58780.5 40.566 106 60 1 1 106 22 124 2.09e-17 77.4
MsaG002503 AT4G09960.5 40.952 105 59 1 1 105 11 112 2.42e-17 77.0
MsaG002503 AT3G58780.4 40.566 106 60 1 1 106 16 118 2.58e-17 77.8
MsaG002503 AT4G09960.3 40.952 105 59 1 1 105 27 128 2.82e-17 77.0
MsaG002503 AT4G09960.4 40.952 105 59 1 1 105 96 197 2.90e-17 78.2
MsaG002503 AT3G04100.1 47.692 65 34 0 2 66 14 78 2.94e-17 76.3
MsaG002503 AT3G57390.1 49.275 69 35 0 1 69 1 69 3.50e-17 77.0
MsaG002503 AT2G42830.1 39.623 106 61 1 1 106 16 118 3.72e-17 76.6
MsaG002503 AT2G42830.2 39.623 106 61 1 1 106 16 118 3.87e-17 76.6
MsaG002503 AT2G22540.3 39.316 117 55 2 1 117 1 101 6.94e-17 75.9
MsaG002503 AT2G22540.1 39.316 117 55 2 1 117 1 101 6.94e-17 75.9
MsaG002503 AT5G51860.1 37.500 104 63 1 1 104 1 102 7.20e-17 75.1
MsaG002503 AT5G51860.2 37.500 104 63 1 1 104 1 102 7.24e-17 75.1
MsaG002503 AT2G14210.1 58.621 58 24 0 1 58 1 58 7.96e-17 75.5
MsaG002503 AT4G22950.3 39.815 108 61 1 1 108 1 104 8.89e-17 75.1
MsaG002503 AT4G22950.1 39.815 108 61 1 1 108 1 104 8.89e-17 75.1
MsaG002503 AT2G14210.2 58.621 58 24 0 1 58 1 58 8.96e-17 75.5
MsaG002503 AT2G45650.1 47.826 69 36 0 1 69 1 69 9.16e-17 75.9
MsaG002503 AT1G29962.1 46.377 69 37 0 2 70 8 76 1.64e-16 73.9
MsaG002503 AT1G28460.1 46.377 69 37 0 2 70 8 76 1.89e-16 73.6
MsaG002503 AT3G54340.1 30.435 184 104 5 1 166 1 178 3.15e-16 73.9
MsaG002503 AT5G65070.4 45.205 73 38 1 1 71 1 73 3.53e-16 72.0
MsaG002503 AT3G58780.2 39.623 106 54 1 1 106 16 111 3.91e-16 73.9
MsaG002503 AT4G24540.1 35.455 110 65 2 1 105 1 109 4.16e-16 73.6
MsaG002503 AT1G77980.1 46.154 78 41 1 1 77 1 78 4.32e-16 74.7
MsaG002503 AT4G11880.2 56.140 57 25 0 1 57 1 57 4.53e-16 72.4
MsaG002503 AT4G11880.3 56.140 57 25 0 1 57 1 57 4.53e-16 72.4
MsaG002503 AT1G22130.1 29.609 179 85 4 1 143 1 174 4.54e-16 74.7
MsaG002503 AT5G10140.2 54.386 57 26 0 1 57 1 57 4.62e-16 72.0
MsaG002503 AT5G20240.2 46.970 66 35 0 1 66 1 66 6.91e-16 71.2
MsaG002503 AT5G10140.4 54.386 57 26 0 1 57 1 57 6.94e-16 72.0
MsaG002503 AT5G65070.1 45.205 73 38 1 1 71 1 73 7.32e-16 72.4
MsaG002503 AT5G10140.1 54.386 57 26 0 1 57 1 57 8.84e-16 72.0
MsaG002503 AT5G10140.3 54.386 57 26 0 1 57 1 57 9.14e-16 72.0
MsaG002503 AT5G62165.17 31.731 104 68 1 1 104 1 101 1.13e-15 70.9
MsaG002503 AT5G62165.12 31.731 104 68 1 1 104 1 101 1.13e-15 70.9
MsaG002503 AT5G62165.11 31.731 104 68 1 1 104 1 101 1.13e-15 70.9
MsaG002503 AT4G11880.4 55.172 58 26 0 1 58 1 58 1.19e-15 72.4
MsaG002503 AT4G11880.1 55.172 58 26 0 1 58 1 58 1.19e-15 72.4
MsaG002503 AT5G20240.1 46.970 66 35 0 1 66 1 66 1.37e-15 71.6
MsaG002503 AT5G62165.6 31.731 104 68 1 1 104 1 101 1.75e-15 70.5
MsaG002503 AT5G62165.9 31.731 104 68 1 1 104 1 101 1.75e-15 70.5
MsaG002503 AT5G62165.7 31.731 104 68 1 1 104 1 101 1.75e-15 70.5
MsaG002503 AT5G62165.8 31.731 104 68 1 1 104 1 101 1.75e-15 70.5
MsaG002503 AT5G62165.13 31.731 104 68 1 1 104 1 101 1.75e-15 70.5
MsaG002503 AT3G30260.1 54.386 57 26 0 1 57 1 57 1.83e-15 72.0
MsaG002503 AT5G65070.3 49.231 65 31 1 1 63 1 65 1.84e-15 72.0
MsaG002503 AT5G65070.2 51.724 58 28 0 1 58 1 58 2.23e-15 71.6
MsaG002503 AT1G46408.1 40.164 122 61 5 1 110 1 122 3.09e-15 71.6
MsaG002503 AT5G65070.5 51.724 58 28 0 1 58 1 58 3.49e-15 70.9
MsaG002503 AT3G58780.3 54.237 59 27 0 1 59 16 74 4.01e-15 71.6
MsaG002503 AT5G51870.2 54.386 57 26 0 1 57 1 57 4.64e-15 69.7
MsaG002503 AT2G22540.2 60.000 50 20 0 1 50 1 50 5.25e-15 70.9
MsaG002503 AT5G62165.3 31.731 104 68 1 1 104 1 101 5.51e-15 70.1
MsaG002503 AT5G62165.1 31.731 104 68 1 1 104 1 101 5.51e-15 70.1
MsaG002503 AT5G62165.2 31.731 104 68 1 1 104 1 101 5.51e-15 70.1
MsaG002503 AT1G77950.3 43.590 78 43 1 1 77 1 78 5.51e-15 70.9
MsaG002503 AT1G77950.2 43.590 78 43 1 1 77 1 78 5.51e-15 70.9
MsaG002503 AT1G77950.1 43.590 78 43 1 1 77 1 78 5.51e-15 70.9
MsaG002503 AT1G77950.4 43.590 78 43 1 1 77 1 78 5.51e-15 70.9
MsaG002503 AT5G62165.10 31.731 104 68 1 1 104 1 101 5.64e-15 70.1
MsaG002503 AT5G62165.4 31.731 104 68 1 1 104 1 101 5.64e-15 70.1
MsaG002503 AT4G18960.1 54.098 61 28 0 2 62 18 78 5.80e-15 70.9
MsaG002503 AT5G51870.1 54.386 57 26 0 1 57 1 57 5.94e-15 70.1
MsaG002503 AT1G69120.2 61.224 49 19 0 1 49 1 49 6.42e-15 70.5
MsaG002503 AT5G51870.5 53.448 58 27 0 1 58 24 81 7.58e-15 69.7
MsaG002503 AT2G03710.3 52.632 57 27 0 1 57 1 57 8.09e-15 69.3
MsaG002503 AT1G69540.1 44.872 78 42 1 1 77 1 78 1.04e-14 71.2
MsaG002503 AT1G18750.4 41.772 79 44 1 1 77 1 79 1.04e-14 71.2
MsaG002503 AT5G51870.4 54.386 57 26 0 1 57 1 57 1.05e-14 69.7
MsaG002503 AT1G18750.1 41.772 79 44 1 1 77 1 79 1.07e-14 71.2
MsaG002503 AT1G18750.3 41.772 79 44 1 1 77 1 79 1.11e-14 71.2
MsaG002503 AT1G69540.2 44.872 78 42 1 1 77 1 78 1.21e-14 70.9
MsaG002503 AT1G69120.1 61.224 49 19 0 1 49 1 49 1.24e-14 70.1
MsaG002503 AT5G60910.1 50.877 57 28 0 1 57 1 57 1.27e-14 69.7
MsaG002503 AT5G51870.3 54.386 57 26 0 1 57 11 67 1.33e-14 69.7
MsaG002503 AT1G71692.1 60.000 50 20 0 1 50 1 50 1.36e-14 69.3
MsaG002503 AT1G26310.1 59.184 49 20 0 1 49 1 49 1.53e-14 69.7
MsaG002503 AT5G15800.1 52.632 57 27 0 1 57 1 57 1.96e-14 69.3
MsaG002503 AT5G23260.3 61.224 49 19 0 1 49 1 49 2.13e-14 69.3
MsaG002503 AT3G02310.2 52.632 57 27 0 1 57 1 57 2.21e-14 68.6
MsaG002503 AT5G23260.2 61.224 49 19 0 1 49 1 49 2.41e-14 69.3
MsaG002503 AT5G23260.4 61.224 49 19 0 1 49 17 65 2.55e-14 69.3
MsaG002503 AT5G23260.1 61.224 49 19 0 1 49 17 65 2.70e-14 69.3
MsaG002503 AT5G15800.2 52.632 57 27 0 1 57 1 57 2.90e-14 68.9
MsaG002503 AT1G24260.2 52.632 57 27 0 1 57 1 57 3.37e-14 68.9
MsaG002503 AT1G17310.1 52.055 73 33 1 2 74 48 118 3.40e-14 68.2
MsaG002503 AT1G24260.1 52.632 57 27 0 1 57 1 57 3.47e-14 68.6
MsaG002503 AT1G24260.3 52.632 57 27 0 1 57 1 57 3.66e-14 68.6
MsaG002503 AT2G03710.1 52.632 57 27 0 1 57 1 57 3.79e-14 68.6
MsaG002503 AT2G03710.2 52.632 57 27 0 1 57 1 57 3.91e-14 68.6
MsaG002503 AT1G17310.2 52.055 73 33 1 2 74 59 129 4.23e-14 68.2
MsaG002503 AT5G65060.3 52.727 55 26 0 1 55 1 55 4.68e-14 67.4
MsaG002503 AT3G02310.1 52.632 57 27 0 1 57 1 57 4.75e-14 68.6
MsaG002503 AT5G65050.2 50.909 55 27 0 1 55 1 55 4.92e-14 67.0
MsaG002503 AT5G62165.14 48.276 58 30 0 1 58 1 58 5.42e-14 65.1
MsaG002503 AT5G65060.2 52.727 55 26 0 1 55 1 55 6.87e-14 67.0
MsaG002503 AT5G65080.3 50.909 55 27 0 1 55 8 62 8.45e-14 66.6
MsaG002503 AT5G65060.1 52.727 55 26 0 1 55 1 55 8.54e-14 66.6
MsaG002503 AT5G65080.2 50.909 55 27 0 1 55 8 62 1.03e-13 66.6
MsaG002503 AT5G65050.3 50.909 55 27 0 1 55 1 55 1.37e-13 66.2
MsaG002503 AT5G65050.5 50.909 55 27 0 1 55 1 55 1.39e-13 65.9
MsaG002503 AT5G65050.1 50.909 55 27 0 1 55 1 55 1.45e-13 65.9
MsaG002503 AT2G03060.3 43.038 79 43 2 1 77 1 79 4.54e-13 66.6
MsaG002503 AT2G03060.7 43.038 79 43 2 1 77 1 79 4.54e-13 66.6
MsaG002503 AT2G03060.1 43.038 79 43 2 1 77 1 79 4.54e-13 66.6
MsaG002503 AT2G03060.2 43.038 79 43 2 1 77 1 79 4.59e-13 66.6
MsaG002503 AT4G37435.1 47.368 57 30 0 1 57 1 57 8.48e-13 63.9
MsaG002503 AT1G28450.1 40.580 69 41 0 2 70 8 76 1.22e-12 63.5
MsaG002503 AT2G26320.1 43.103 58 33 0 1 58 17 74 2.83e-12 60.8
MsaG002503 AT1G60920.1 42.308 78 38 3 1 71 1 78 2.15e-11 60.1
MsaG002503 AT1G77080.11 66.667 39 13 0 1 39 1 39 2.65e-11 59.7
MsaG002503 AT1G77080.5 66.667 39 13 0 1 39 1 39 2.66e-11 59.7
MsaG002503 AT1G77080.12 66.667 39 13 0 1 39 1 39 2.97e-11 58.9
MsaG002503 AT1G77080.4 66.667 39 13 0 1 39 1 39 4.97e-11 59.3
MsaG002503 AT1G77080.2 66.667 39 13 0 1 39 1 39 5.82e-11 58.9
MsaG002503 AT1G77080.8 66.667 39 13 0 1 39 1 39 9.95e-11 58.9

Find 30 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTGATTCTTCCAATA+TGG 0.230078 1:-42434798 MsaT002503.1:CDS
GGTGACAATCCTTACTCTTT+TGG 0.280846 1:-42434896 MsaT002503.1:CDS
TACGTTTAGGCTTTAGTTCA+AGG 0.340076 1:+42434840 None:intergenic
CCTTCAGAGTTCCTACGTTT+AGG 0.407154 1:+42434827 None:intergenic
ATGTATGATGCTTCTAGCTC+AGG 0.444160 1:-42434585 MsaT002503.1:CDS
AGGCTTTAGTTCAAGGTGCT+TGG 0.460931 1:+42434847 None:intergenic
GCAGCAACAACATCAACTCC+TGG 0.473203 1:+42434869 None:intergenic
GCTATTGTTGTGTTCTCTCC+AGG 0.475407 1:-42434917 MsaT002503.1:CDS
CCTGGGTGACCAAAAGAGTA+AGG 0.526567 1:+42434887 None:intergenic
ACATTCTCAAAGCGTCGGAC+GGG 0.532546 1:-42434989 MsaT002503.1:CDS
CACATTCTCAAAGCGTCGGA+CGG 0.538823 1:-42434990 MsaT002503.1:CDS
TCAAGAACTTGCTGAGCTGT+TGG 0.539928 1:-42434765 MsaT002503.1:CDS
GAAAGACTCCAACACGAGGC+AGG 0.554822 1:-42435014 MsaT002503.1:CDS
CCTAAACGTAGGAACTCTGA+AGG 0.584431 1:-42434827 MsaT002503.1:CDS
GTCGCAAAATTAAGATTGAG+AGG 0.585479 1:-42435039 MsaT002503.1:CDS
GCTTCTAGCTCAGGATCCAG+TGG 0.592947 1:-42434576 MsaT002503.1:CDS
ATATTGGAAGAATCAGAAGA+GGG 0.595456 1:+42434800 None:intergenic
TCTAGCTCAGGATCCAGTGG+TGG 0.596669 1:-42434573 MsaT002503.1:CDS
CAGCAACAACATCAACTCCT+GGG 0.611229 1:+42434870 None:intergenic
GAATGTGACCTGCCTCGTGT+TGG 0.614175 1:+42435006 None:intergenic
CATATTGGAAGAATCAGAAG+AGG 0.623619 1:+42434799 None:intergenic
CTAGCTCAGGATCCAGTGGT+GGG 0.626580 1:-42434572 MsaT002503.1:CDS
AGGTCACATTCTCAAAGCGT+CGG 0.637904 1:-42434994 MsaT002503.1:CDS
CTGTTGGCACAAATCCGAGA+AGG 0.647867 1:-42434749 MsaT002503.1:CDS
GATTCTGAAGCAAAATGATG+TGG 0.656395 1:-42434699 MsaT002503.1:CDS
AAAGAGTAAGGATTGTCACC+TGG 0.657655 1:+42434899 None:intergenic
TCGCAAAATTAAGATTGAGA+GGG 0.676979 1:-42435038 MsaT002503.1:CDS
TATTGGAAGAATCAGAAGAG+GGG 0.697047 1:+42434801 None:intergenic
TTGAACTAAAGCCTAAACGT+AGG 0.707212 1:-42434838 MsaT002503.1:CDS
GGGTGAAAGACTCCAACACG+AGG 0.715970 1:-42435018 MsaT002503.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 42434529 42435068 42434529 ID=MsaG002503
Chr1 mRNA 42434529 42435068 42434529 ID=MsaT002503.1;Parent=MsaG002503
Chr1 exon 42434529 42435068 42434529 ID=MsaT002503.1.exon1;Parent=MsaT002503.1
Chr1 CDS 42434529 42435068 42434529 ID=cds.MsaT002503.1;Parent=MsaT002503.1
Gene Sequence

>MsaT002503.1

ATGGGTCGTCGCAAAATTAAGATTGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACATTCTCAAAGCGTCGGACGGGCTTATTCAAGAAAGCAAATGAATTGTCGATTTTGTGCGGAGCAGAAGTGGCTATTGTTGTGTTCTCTCCAGGTGACAATCCTTACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGCACCTTGAACTAAAGCCTAAACGTAGGAACTCTGAAGGAAACCCCTCTTCTGATTCTTCCAATATGGAAAAATTGAATCAAGAACTTGCTGAGCTGTTGGCACAAATCCGAGAAGGTGAAAAGAAAGCTGAGACTCATGATGAGATTCTGAAGCAAAATGATGTGGCAAAACTCTCAGAGCTTAAAGAATTGAGAGATTCGTACAAAGATCTTCAAGATTGCATAAAATTGCGTCTCAGTGATATTGAGATATCAGAATGTATGATGCTTCTAGCTCAGGATCCAGTGGTGGGAAGAAAAGCGAAAACGTCAAAAAAGAAAAGAAGAAAAAATTGA
Protein sequence

>MsaT002503.1

MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGDNPYSFGHPGVDVVAAKHLELKPKRRNSEGNPSSDSSNMEKLNQELAELLAQIREGEKKAETHDEILKQNDVAKLSELKELRDSYKDLQDCIKLRLSDIEISECMMLLAQDPVVGRKAKTSKKKRRKN*