AlfalfaGEDB | MsaG002555

M. sativa ssp. caerulea / MsaG002555

KEGG: -
GO: GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002555	XP_013467698.1	97.849	372	7	1	1	371	1	372	0.0	747

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002555	sp\|P93749\|Y2197_ARATH	76.216	370	80	4	1	369	1	363	0.0	553

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002555	tr\|A0A072VUF0\|A0A072VUF0_MEDTR	97.849	372	7	1	1	371	1	372	0.0	747

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG002555	0.808145	6.085727e-50	9.938224e-48
MsaG000045	MsaG002555	0.800341	2.521569e-48	3.435620e-46
MsaG000070	MsaG002555	0.830763	4.404080e-55	1.302657e-52
MsaG000083	MsaG002555	0.852295	9.714788e-61	5.702474e-58
MsaG000113	MsaG002555	0.876539	2.683268e-68	4.132676e-65
MsaG000151	MsaG002555	0.856280	6.948352e-62	4.702870e-59
MsaG000153	MsaG002555	0.846058	5.183960e-59	2.459854e-56
MsaG000163	MsaG002555	0.845332	8.139534e-59	3.770549e-56
MsaG000188	MsaG002555	0.854614	2.112839e-61	1.346280e-58
MsaG000213	MsaG002555	0.819525	1.941018e-52	4.215570e-50

Showing 1 to 10 of 1,043 entries

Previous1 2 3 4 5…105Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002555	MtrunA17_Chr1g0175731	97.849	372	7	1	1	371	1	372	0.0	747
MsaG002555	MtrunA17_Chr7g0258951	81.402	371	66	2	1	371	1	368	0.0	568
MsaG002555	MtrunA17_Chr1g0213501	63.859	368	123	2	2	369	46	403	3.31e-165	468
MsaG002555	MtrunA17_Chr1g0194101	62.772	368	123	4	1	367	1	355	5.79e-156	442
MsaG002555	MtrunA17_Chr4g0069241	66.454	313	97	2	59	367	51	359	2.74e-146	418
MsaG002555	MtrunA17_Chr3g0084191	54.268	328	123	4	45	368	193	497	4.68e-114	341
MsaG002555	MtrunA17_Chr0c20g0493811	56.202	258	71	3	124	371	29	254	4.64e-94	282
MsaG002555	MtrunA17_Chr7g0270121	43.574	319	169	4	42	357	346	656	1.40e-81	263
MsaG002555	MtrunA17_Chr2g0289161	43.730	311	167	4	48	356	391	695	3.63e-81	262
MsaG002555	MtrunA17_Chr2g0320111	42.617	298	167	2	66	362	82	376	8.60e-81	253

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002555	AT2G41970.1	76.216	370	80	4	1	369	1	363	0.0	553
MsaG002555	AT2G30740.5	62.881	361	120	4	2	360	5	353	3.50e-161	456
MsaG002555	AT2G30740.2	62.881	361	120	4	2	360	5	353	3.50e-161	456
MsaG002555	AT2G30740.10	62.881	361	120	4	2	360	5	353	3.50e-161	456
MsaG002555	AT2G30740.11	62.881	361	120	4	2	360	5	353	3.50e-161	456
MsaG002555	AT2G30740.6	62.881	361	120	4	2	360	5	353	3.50e-161	456
MsaG002555	AT2G30740.15	62.881	361	120	4	2	360	5	353	3.50e-161	456
MsaG002555	AT2G30740.4	62.881	361	120	4	2	360	5	353	3.50e-161	456
MsaG002555	AT2G30740.14	62.881	361	120	4	2	360	5	353	3.50e-161	456
MsaG002555	AT2G30740.7	62.881	361	120	4	2	360	5	353	3.50e-161	456

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 90 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTTTATAGTTT+TGG	0.205463	1:+43073324	MsaT002555.1:CDS
AACGCATATGGCGGTCGTGG+TGG	0.609581	1:+43070386	MsaT002555.1:CDS
AAGAACCAAGACTTGCATAT+TGG	0.431625	1:-43072420	None:intergenic
AAGCGGTTAACAGATAACTT+TGG	0.509984	1:+43072016	MsaT002555.1:CDS
ACAAAAGCACTTATTGGAGA+AGG	0.553038	1:+43072040	MsaT002555.1:CDS
ACAAGACTTTGTTGCCCTTT+AGG	0.289136	1:-43073399	None:intergenic
ACAAGAGTCTTGGGAACATT+TGG	0.353209	1:+43072789	MsaT002555.1:CDS
ACATCTCTATGAACTATAGA+AGG	0.433149	1:-43072666	None:intergenic
ACCAGTATCCAGCTTCTTAA+TGG	0.257119	1:-43072113	None:intergenic
ACTACATTCAACAAGAGTCT+TGG	0.491997	1:+43072779	MsaT002555.1:CDS

Showing 1 to 10 of 90 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	43070308	43074083	43070308	ID=MsaG002555
Chr1	mRNA	43070308	43074083	43070308	ID=MsaT002555.1;Parent=MsaG002555
Chr1	exon	43070308	43070416	43070308	ID=MsaT002555.1.exon1;Parent=MsaT002555.1
Chr1	CDS	43070308	43070416	43070308	ID=cds.MsaT002555.1;Parent=MsaT002555.1
Chr1	exon	43071918	43072177	43071918	ID=MsaT002555.1.exon2;Parent=MsaT002555.1
Chr1	CDS	43071918	43072177	43071918	ID=cds.MsaT002555.1;Parent=MsaT002555.1
Chr1	exon	43072334	43072460	43072334	ID=MsaT002555.1.exon3;Parent=MsaT002555.1
Chr1	CDS	43072334	43072460	43072334	ID=cds.MsaT002555.1;Parent=MsaT002555.1
Chr1	exon	43072553	43072826	43072553	ID=MsaT002555.1.exon4;Parent=MsaT002555.1
Chr1	CDS	43072553	43072826	43072553	ID=cds.MsaT002555.1;Parent=MsaT002555.1
Chr1	exon	43073296	43073428	43073296	ID=MsaT002555.1.exon5;Parent=MsaT002555.1
Chr1	CDS	43073296	43073428	43073296	ID=cds.MsaT002555.1;Parent=MsaT002555.1
Chr1	exon	43073536	43073622	43073536	ID=MsaT002555.1.exon6;Parent=MsaT002555.1
Chr1	CDS	43073536	43073622	43073536	ID=cds.MsaT002555.1;Parent=MsaT002555.1
Chr1	exon	43073958	43074083	43073958	ID=MsaT002555.1.exon7;Parent=MsaT002555.1
Chr1	CDS	43073958	43074083	43073958	ID=cds.MsaT002555.1;Parent=MsaT002555.1

Gene Sequence

>MsaT002555.1

ATGTTGTGCTGTGGAGGTGCAGATGAGGATTTAACCACTTTAGCTGCAAATCATTACAGCTCAGCAGCTATAGGGAGTAACGCATATGGCGGTCGTGGTGGTGGAGGAGGCGGTGATAGAGGAGAGCCAAGGAGCAATATTATCAAGAGTGGTGGTCCGCAGAAAGCATTAGAAATTGAGTCAACCGAAATTAAGTTGAGCGAATTAAAGCGGTTAACAGATAACTTTGGTACAAAAGCACTTATTGGAGAAGGTTCCAATGGGAGGGTTTTCCGCGCAAAGTTGAGTACTGGGGAGGAAGCTGCCATTAAGAAGCTGGATACTGGTTCTTCGCCGGATCCTGACTCCGATTCCGATTTTGAAGCGCAGTTAGCAATTGTTTCAAGACTGAAGAATGAACACTTTGTGGGGTTAATGGGATATTGTCTTGAGGCAAATAACAGAATTTTGGTTTACCAATATGCAAGTCTTGGTTCTTTGCATGACACATTGCACGGAAGAAAAGGAGTTCAAGGGGCTGAACCTGGTATAATTTTAAGTTGGAACCAAAGAGTAAAAGTTGCATTTGGTGCAGCAAAAGGACTTGAGTTTCTTCATGAGAAAGTTCAACCTTCTATAGTTCATAGAGATGTTAGATCCACCAATGTTTTGCTGTTTAATGATTATGAGGCTAAGATTGCAGATTTCAACTTGACAAATCAGTCTTCTGACTCGGCAGCTCGACTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCTATGACAGGGCAAATAACCCAAAAAAGTGATGTTTATAGTTTTGGAGTTGTCCTTTTAGAACTCTTGACAGGAAGAAAACCAGTGGACCATACAATGCCTAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGACTAAGTGAAGACAAAGTGAAACAATGTGTCGATCCTAAACTAAACAACGACTATCCACCAAAAGCAATTGCTAAGTTGGCAGCAGTTGCAGCACTTTGTGTTCAGTATGAAGCTGATTTTAGGCCAAACATGACAATTGTCGTCAAAGCTCTCCAGCCACTTCTCAATTCGAAACCGGCCGGACCTGACTCTCATGCTTGA

Protein sequence

>MsaT002555.1

MLCCGGADEDLTTLAANHYSSAAIGSNAYGGRGGGGGGDRGEPRSNIIKSGGPQKALEIESTEIKLSELKRLTDNFGTKALIGEGSNGRVFRAKLSTGEEAAIKKLDTGSSPDPDSDSDFEAQLAIVSRLKNEHFVGLMGYCLEANNRILVYQYASLGSLHDTLHGRKGVQGAEPGIILSWNQRVKVAFGAAKGLEFLHEKVQPSIVHRDVRSTNVLLFNDYEAKIADFNLTNQSSDSAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPDSHA*